Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007876.1

Orthogroup ID

OG0004885

Physical Location & Seq

Genomic Coordinates Reverse (-)

990 .. 1461

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgagaaaatcggagagcgcaaatcgactctctgagagcgatgttagtactttagtttctcagataagagacttggataggaagaatgcagaactggaagaacaaaacaaaaatttggcttccatggtaggactcttgtgtttgttgtgcttgtttgtttcttttccgaaagttttcacttcaggagggtttggttatgggcaatggtcagtttggttgcctaattatattgtcgacttatacaggctgggcaaagaggccgataacaacaacatcaccgtaggatcccggggcggcatcgtcgataatctttttgtcggcaaatccctcaatcgagactccgatatcatctttgattatcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

5.39

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004885)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066831
rosa_laevigata	RLG00000001037 RLG00000002992 RLG00000009041 RLG00000013095 RLG00000014399 RLG00000025318 RLG00000032727
rosa_multiflora	Rmu_sc0007876.1_g000001 Rmu_sc0009833.1_g000011 Rmu_sc0030579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133360 Rroxscaffold_2G00137040 Rroxscaffold_5G00332840 Rroxscaffold_7G00190740
rosa_samantha	Rh2BG194400 Rh2BG453200 Rh2DG329000 Rh2DG463400 Rh3AG210000 Rh3AG316800 Rh3CG342100 Rh3CG356100 Rh4AG138700 Rh5AG319900 Rh6AG116600 Rh7AG447000 Rh7AG447100
rosa_wichuraiana	Rw0G020530 Rw3G028320 Rw5G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	2 cut(s)	279, 292
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	63, 330
AlwI	GGATC	2 cut(s)	279, 292
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	20
AsuC2I	CCSGG	2 cut(s)	289, 290
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	284
BcnI	CCSGG	2 cut(s)	289, 290
BcoDI	GTCTC	2 cut(s)	63, 330
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	289, 290
BmeT110I	CYCGRG	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	289, 290
BmsI	GCATC	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	289, 290
Bsa29I	ATCGAT	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	123, 288, 289
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	3 cut(s)	123, 288, 289
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	24, 74
BseNI	ACTGG	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	63, 330
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	25, 73
BspDI	ATCGAT	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	279, 292
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	123, 288, 289
BssMI	GATC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	33, 60
BstDSI	CCRYGG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	63, 330
BstMBI	GATC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	287, 288
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	54
CfoI	GCGC	1 cut(s)	20
Cfr9I	CCCGGG	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	3 cut(s)	119, 247, 260
CviKI_1	RGCY	3 cut(s)	119, 247, 260
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	2 cut(s)	33, 60
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	288
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	125, 198, 228, 241
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	295
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	295
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	289
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	27, 132, 338
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	5 cut(s)	13, 34, 63, 168, 343
Hpy188III	TCNNGA	2 cut(s)	183, 335
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	33, 60
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	284
LpnPI	CCDG	5 cut(s)	80, 168, 229, 233, 302
LweI	GCATC	1 cut(s)	306
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	2 cut(s)	94, 110
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	2 cut(s)	112, 223
MlyI	GAGTC	3 cut(s)	21, 126, 332
MnlI	CCTC	3 cut(s)	179, 250, 338
MroXI	GAANNNNTTC	1 cut(s)	173
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	289, 290
Mva1269I	GAATGC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	289, 290
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	286
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	3 cut(s)	21, 126, 332
PpsI	GAGTC	3 cut(s)	21, 126, 332
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	3 cut(s)	21, 126, 332
ScrFI	CCNGG	2 cut(s)	289, 290
SfaNI	GCATC	1 cut(s)	306
SmaI	CCCGGG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	112, 223
SsiI	CCGC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	287, 288
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	5 cut(s)	25, 234, 303, 334, 361
TasI	AATT	2 cut(s)	112, 223
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	297
TspMI	CCCGGG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.