RLG00000013095

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004885
Physical Location & Seq
Forward (+)
26158712 .. 26159750
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013095

Sequence Viewer

Length: 411 bp
ATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGCCTGGACGCATGGGGCGAAGGGAAGGCAACGTGTTGGAAGAAATTCATCAAAAGCGAGCTGCACAAAGATTGAGCAAAACTTCTTCGGGACTCGATTTCAGCCAGATCCCACCTATCAATAATGGGGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAATTGGAAGAACAAACAAAAATTTGGCTTCCATGGCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCTCAGGGCGGCGTTGTCGATAATCTTTTTGTCGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.98

Weight (kDa)

8.06

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 136, 337
AcsI RAATTY 2 cut(s) 78, 276
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 66
AjnI CCWGG 2 cut(s) 32, 37
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 228, 375
AlwI GGATC 2 cut(s) 136, 337
AoxI GGCC 2 cut(s) 35, 303
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 78, 276
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 34, 39
BcoDI GTCTC 2 cut(s) 228, 375
BisI GCNGC 2 cut(s) 96, 340
BlsI GCNGC 2 cut(s) 97, 341
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 34, 39
BmrFI CCNGG 2 cut(s) 34, 39
BpmI CTGGAG 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 34, 39
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 189, 239, 347
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 2 cut(s) 37, 305
BshVI ATCGAT 1 cut(s) 406
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 228, 375
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 37, 305
Bsp143I GATC 2 cut(s) 141, 329
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 1 cut(s) 339
BspANI GGCC 2 cut(s) 37, 305
BspCNI CTCAG 3 cut(s) 190, 238, 346
BspDI ATCGAT 1 cut(s) 406
BspPI GGATC 2 cut(s) 136, 337
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 2 cut(s) 141, 329
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 34, 39
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 198, 225, 333
BstDSI CCRYGG 1 cut(s) 287
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 144, 332
BstMAI GTCTC 2 cut(s) 228, 375
BstMBI GATC 2 cut(s) 141, 329
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 2 cut(s) 34, 39
BstSCI CCNGG 2 cut(s) 32, 37
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 141, 329
BstYI RGATCY 2 cut(s) 141, 329
Bsu15I ATCGAT 1 cut(s) 406
BsuRI GGCC 2 cut(s) 37, 305
BsuTUI ATCGAT 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 2 cut(s) 219, 304
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 406
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 46, 288
CviJI RGCY 7 cut(s) 17, 37, 95, 138, 283, 292, 305
CviKI_1 RGCY 7 cut(s) 17, 37, 95, 138, 283, 292, 305
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 198, 225, 333
DpnI GATC 2 cut(s) 143, 331
DpnII GATC 2 cut(s) 141, 329
Eco130I CCWWGG 1 cut(s) 287
Eco32I GATATC 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 32, 37
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 2 cut(s) 49, 291
FaiI YATR 2 cut(s) 47, 289
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 45, 287
Fnu4HI GCNGC 2 cut(s) 96, 340
Fsp4HI GCNGC 2 cut(s) 96, 340
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 96, 340
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 37, 305
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 49, 291
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 3 cut(s) 126, 192, 383
Hpy188I TCNGA 4 cut(s) 178, 199, 228, 388
Hpy188III TCNNGA 2 cut(s) 123, 380
HpyAV CCTTC 2 cut(s) 48, 53
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 98, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 3 cut(s) 198, 225, 333
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 49, 291
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 141, 329
LpnPI CCDG 8 cut(s) 3, 19, 24, 46, 51, 152, 278, 320
Lsp1109I GCAGC 1 cut(s) 82
MaeII ACGT 1 cut(s) 66
MalI GATC 2 cut(s) 143, 331
MboI GATC 2 cut(s) 141, 329
MboII GAAGA 4 cut(s) 86, 111, 259, 275
MflI RGATCY 2 cut(s) 141, 329
MluCI AATT 3 cut(s) 78, 257, 276
MlyI GAGTC 3 cut(s) 120, 186, 377
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 4 cut(s) 14, 17, 295, 383
MroXI GAANNNNTTC 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 34, 39
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 34, 39
MwoI GCNNNNNNNGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 287
NdeII GATC 2 cut(s) 141, 329
NlaIII CATG 2 cut(s) 49, 291
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 97, 341
PleI GAGTC 3 cut(s) 120, 186, 377
PpsI GAGTC 3 cut(s) 120, 186, 377
Psp6I CCWGG 2 cut(s) 32, 37
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 32, 37
PsuI RGATCY 2 cut(s) 141, 329
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 96, 340
Sau3AI GATC 2 cut(s) 141, 329
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 3 cut(s) 120, 186, 377
ScrFI CCNGG 2 cut(s) 34, 39
SetI ASST 5 cut(s) 28, 35, 69, 97, 151
Sse9I AATT 3 cut(s) 78, 257, 276
SsiI CCGC 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 32, 37
StyI CCWWGG 1 cut(s) 287
TaiI ACGT 1 cut(s) 69
TaqI TCGA 6 cut(s) 7, 129, 190, 348, 379, 406
TasI AATT 3 cut(s) 78, 257, 276
TatI WGTACW 1 cut(s) 212
TauI GCSGC 1 cut(s) 342
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 71
XapI RAATTY 2 cut(s) 78, 276
XmnI GAANNNNTTC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.