Rh3AG316800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004885
Physical Location & Seq
Reverse (-)
43366799 .. 43367844
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG316800.1

Sequence Viewer

Length: 423 bp
ATGCTTCGAGGCATGGCTGGAGGAGGTGCGACCTGGCCTGGACGCGTGGGGCGAAGGGAAGGCAAAGAGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAATATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATTGATAATGGAGGAATGAGAAAATCGGAGAGCGTAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGTAGGACTCTTGCTGGGCAAAGAGGCCGATAACAACAACATCGTCGTAGGATCCCGGGGTGGCGTAGTCGATAATCTTTTTGTCGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.25

Weight (kDa)

6.35

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AclWI GGATC 3 cut(s) 136, 336, 349
AcsI RAATTY 2 cut(s) 78, 277
AfaI GTAC 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 43
AjnI CCWGG 2 cut(s) 32, 37
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 228, 387
AlwI GGATC 3 cut(s) 136, 336, 349
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 2 cut(s) 35, 315
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 78, 277
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 346, 347
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 34, 39
BcnI CCSGG 2 cut(s) 346, 347
BcoDI GTCTC 2 cut(s) 228, 387
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 4 cut(s) 34, 39, 346, 347
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 126, 127, 343
BmrFI CCNGG 4 cut(s) 34, 39, 346, 347
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 346, 347
Bsa29I ATCGAT 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 288, 345, 346
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 34, 39
BseCI ATCGAT 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 288, 345, 346
BseMII CTCAG 3 cut(s) 148, 189, 239
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 37, 317
BshVI ATCGAT 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 228, 387
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 37, 317
BsoBI CYCGRG 1 cut(s) 345
Bsp143I GATC 3 cut(s) 130, 141, 341
Bsp19I CCATGG 1 cut(s) 288
BspANI GGCC 2 cut(s) 37, 317
BspCNI CTCAG 3 cut(s) 147, 190, 238
BspDI ATCGAT 1 cut(s) 418
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 126, 127, 343
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 3 cut(s) 136, 336, 349
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 288, 345, 346
BssMI GATC 3 cut(s) 130, 141, 341
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 34, 39
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 134, 198, 225
BstDSI CCRYGG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 3 cut(s) 133, 144, 344
BstMAI GTCTC 2 cut(s) 228, 387
BstMBI GATC 3 cut(s) 130, 141, 341
BstNI CCWGG 2 cut(s) 34, 39
BstSCI CCNGG 4 cut(s) 32, 37, 344, 345
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 141, 341
BstYI RGATCY 2 cut(s) 141, 341
Bsu15I ATCGAT 1 cut(s) 418
BsuRI GGCC 2 cut(s) 37, 317
BsuTUI ATCGAT 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 125
Cfr9I CCCGGG 1 cut(s) 345
ClaI ATCGAT 1 cut(s) 418
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 13, 289
CviJI RGCY 6 cut(s) 17, 37, 95, 138, 284, 317
CviKI_1 RGCY 6 cut(s) 17, 37, 95, 138, 284, 317
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 134, 198, 225
DpnI GATC 3 cut(s) 132, 143, 343
DpnII GATC 3 cut(s) 130, 141, 341
Eco130I CCWWGG 1 cut(s) 288
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 32, 37
EcoRV GATATC 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 16, 292
FaiI YATR 2 cut(s) 14, 290
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 12, 288
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 37, 317
HapII CCGG 1 cut(s) 346
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 16, 292
HinfI GANTC 3 cut(s) 192, 297, 395
HpaII CCGG 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 178, 199, 228, 400
Hpy188III TCNNGA 2 cut(s) 123, 392
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 48, 53
HpyCH4V TGCA 2 cut(s) 98, 254
HpyF3I CTNAG 3 cut(s) 134, 198, 225
Hsp92II CATG 2 cut(s) 16, 292
KflI GGGWCCC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 130, 141, 341
LpnPI CCDG 9 cut(s) 3, 19, 24, 46, 51, 152, 245, 290, 359
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 3 cut(s) 132, 143, 343
MboI GATC 3 cut(s) 130, 141, 341
MboII GAAGA 4 cut(s) 86, 111, 259, 275
MflI RGATCY 2 cut(s) 141, 341
MluCI AATT 2 cut(s) 78, 277
MluI ACGCGT 1 cut(s) 43
MlyI GAGTC 3 cut(s) 186, 291, 389
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 5 cut(s) 14, 17, 155, 307, 395
MroXI GAANNNNTTC 1 cut(s) 78
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 4 cut(s) 34, 39, 346, 347
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 34, 39
MvnI CGCG 1 cut(s) 45
NciI CCSGG 2 cut(s) 346, 347
NcoI CCATGG 1 cut(s) 288
NdeII GATC 3 cut(s) 130, 141, 341
NlaIII CATG 2 cut(s) 16, 292
NlaIV GGNNCC 3 cut(s) 126, 127, 343
PcsI WCGNNNNNNNCGW 2 cut(s) 49, 88
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 3 cut(s) 186, 291, 389
PpsI GAGTC 3 cut(s) 186, 291, 389
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 32, 37
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 2 cut(s) 32, 37
PspN4I GGNNCC 3 cut(s) 126, 127, 343
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 141, 341
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 130, 141, 341
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 3 cut(s) 186, 291, 389
ScrFI CCNGG 4 cut(s) 34, 39, 346, 347
SetI ASST 4 cut(s) 28, 35, 97, 151
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 125
SmaI CCCGGG 1 cut(s) 347
Sse9I AATT 2 cut(s) 78, 277
SspI AATATT 1 cut(s) 105
StyD4I CCNGG 4 cut(s) 32, 37, 344, 345
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 5 cut(s) 7, 190, 360, 391, 418
TasI AATT 2 cut(s) 78, 277
TatI WGTACW 1 cut(s) 212
TseI GCWGC 1 cut(s) 95
TspMI CCCGGG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 78, 277
XmaI CCCGGG 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.