RLG00000009041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004885
Physical Location & Seq
Forward (+)
45477671 .. 45478703
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009041

Sequence Viewer

Length: 411 bp
ATGCTTCGAGCCGTGGCTGGAGGAGATGCGACCTGGCCTGGACGCATGGGGCGAAGGGAAGGCAAAGTGTTAGAAGAAATTCGTCAACAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATCAATAATGGAGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAAATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAACAAAAATTTGGCTTCCATGGCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCCCAGAGCGGCGTCATCGATAATCTTTTTGTCGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.08

Weight (kDa)

6.34

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 339
AciI CCGC 1 cut(s) 339
AclWI GGATC 3 cut(s) 136, 324, 337
AcsI RAATTY 2 cut(s) 78, 276
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 293
AjnI CCWGG 2 cut(s) 32, 37
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 228, 375
AlwI GGATC 3 cut(s) 136, 324, 337
AoxI GGCC 2 cut(s) 35, 303
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 78, 276
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 34, 39
BcoDI GTCTC 2 cut(s) 228, 375
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 96, 340
BlsI GCNGC 2 cut(s) 97, 341
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 34, 39
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 126, 127, 331
BmrFI CCNGG 2 cut(s) 34, 39
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 39
Bsa29I ATCGAT 2 cut(s) 348, 406
BsaHI GRCGYC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 12, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 34, 39
BseCI ATCGAT 2 cut(s) 348, 406
BseDI CCNNGG 2 cut(s) 12, 287
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 148, 189
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 37, 305
BshVI ATCGAT 2 cut(s) 348, 406
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 228, 375
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 37, 305
Bsp143I GATC 3 cut(s) 130, 141, 329
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 1 cut(s) 339
BspANI GGCC 2 cut(s) 37, 305
BspCNI CTCAG 2 cut(s) 147, 190
BspDI ATCGAT 2 cut(s) 348, 406
BspLI GGNNCC 3 cut(s) 126, 127, 331
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 3 cut(s) 136, 324, 337
BsrBI CCGCTC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 12, 287
BssMI GATC 3 cut(s) 130, 141, 329
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 34, 39
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 134, 198
BstDSI CCRYGG 2 cut(s) 12, 287
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 133, 144, 332
BstMAI GTCTC 2 cut(s) 228, 375
BstMBI GATC 3 cut(s) 130, 141, 329
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 2 cut(s) 34, 39
BstSCI CCNGG 2 cut(s) 32, 37
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 141, 329
BstYI RGATCY 2 cut(s) 141, 329
Bsu15I ATCGAT 2 cut(s) 348, 406
BsuRI GGCC 2 cut(s) 37, 305
BsuTUI ATCGAT 2 cut(s) 348, 406
BtgI CCRYGG 2 cut(s) 12, 287
BtgZI GCGATG 2 cut(s) 219, 304
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 125
ClaI ATCGAT 2 cut(s) 348, 406
CseI GACGC 2 cut(s) 51, 331
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 46, 288
CviJI RGCY 8 cut(s) 11, 17, 37, 95, 138, 283, 292, 305
CviKI_1 RGCY 8 cut(s) 11, 17, 37, 95, 138, 283, 292, 305
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 134, 198
DpnI GATC 3 cut(s) 132, 143, 331
DpnII GATC 3 cut(s) 130, 141, 329
Eco130I CCWWGG 1 cut(s) 287
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 32, 37
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 2 cut(s) 49, 291
FaiI YATR 2 cut(s) 47, 289
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 45, 287
Fnu4HI GCNGC 2 cut(s) 96, 340
Fsp4HI GCNGC 2 cut(s) 96, 340
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 96, 340
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 37, 305
HgaI GACGC 2 cut(s) 51, 331
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 2 cut(s) 49, 291
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 86
HindII GTYRAC 1 cut(s) 86
HinfI GANTC 2 cut(s) 192, 383
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 178, 199, 388
Hpy188III TCNNGA 2 cut(s) 123, 380
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 48, 53
HpyCH4V TGCA 2 cut(s) 98, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 2 cut(s) 134, 198
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 2 cut(s) 49, 291
HspAI GCGC 1 cut(s) 183
KflI GGGWCCC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 130, 141, 329
LpnPI CCDG 9 cut(s) 3, 19, 24, 46, 51, 152, 245, 278, 347
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 16
MalI GATC 3 cut(s) 132, 143, 331
MbiI CCGCTC 1 cut(s) 339
MboI GATC 3 cut(s) 130, 141, 329
MboII GAAGA 4 cut(s) 86, 111, 259, 275
MflI RGATCY 2 cut(s) 141, 329
MluCI AATT 2 cut(s) 78, 276
MlyI GAGTC 2 cut(s) 186, 377
MnlI CCTC 4 cut(s) 14, 155, 295, 383
MroXI GAANNNNTTC 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 34, 39
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 34, 39
MwoI GCNNNNNNNGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 287
NdeII GATC 3 cut(s) 130, 141, 329
NlaIII CATG 2 cut(s) 49, 291
NlaIV GGNNCC 3 cut(s) 126, 127, 331
PcsI WCGNNNNNNNCGW 2 cut(s) 49, 88
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 97, 341
PleI GAGTC 2 cut(s) 186, 377
PpsI GAGTC 2 cut(s) 186, 377
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 32, 37
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 32, 37
PspN4I GGNNCC 3 cut(s) 126, 127, 331
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 141, 329
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 96, 340
Sau3AI GATC 3 cut(s) 130, 141, 329
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 2 cut(s) 186, 377
ScrFI CCNGG 2 cut(s) 34, 39
SetI ASST 3 cut(s) 35, 97, 151
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 125
Sse9I AATT 2 cut(s) 78, 276
SsiI CCGC 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 32, 37
StyI CCWWGG 1 cut(s) 287
TaqI TCGA 5 cut(s) 7, 190, 348, 379, 406
TasI AATT 2 cut(s) 78, 276
TatI WGTACW 1 cut(s) 212
TauI GCSGC 1 cut(s) 342
TseI GCWGC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 78, 276
XmnI GAANNNNTTC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.