Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004885

Physical Location & Seq

Genomic Coordinates Forward (+)

41629013 .. 41643054

Gene Structure 14042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG329000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGAAGAGGATGTCGAGAGAGAGATTCGATCAAGATGGAGCTGCACTTCGAGAGCTGGAGTATTTAGGGATTCAGAGAGTTCAGACTCCAAACCCAATTATTGAAATTGATGAAATCTCTCTCGCAAAGGCAATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGCCTGGACGCGTGGGGAAACGCCGTGAAGAGGTTATCCCACCTATCGATAATGGAGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGCTGGGCAAAAGAGGCCGATAACAACATCGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

8.04

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004885)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066831
rosa_laevigata	RLG00000001037 RLG00000002992 RLG00000009041 RLG00000013095 RLG00000014399 RLG00000025318 RLG00000032727
rosa_multiflora	Rmu_sc0007876.1_g000001 Rmu_sc0009833.1_g000011 Rmu_sc0030579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133360 Rroxscaffold_2G00137040 Rroxscaffold_5G00332840 Rroxscaffold_7G00190740
rosa_samantha	Rh2BG194400 Rh2BG453200 Rh2DG329000 Rh2DG463400 Rh3AG210000 Rh3AG316800 Rh3CG342100 Rh3CG356100 Rh4AG138700 Rh5AG319900 Rh6AG116600 Rh7AG447000 Rh7AG447100
rosa_wichuraiana	Rw0G020530 Rw3G028320 Rw5G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	199, 357
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	167, 172
AluBI	AGCT	2 cut(s)	44, 58
AluI	AGCT	2 cut(s)	44, 58
Alw26I	GTCTC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	170, 368
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	177, 370
BciT130I	CCWGG	2 cut(s)	169, 174
BcoDI	GTCTC	1 cut(s)	291
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	169, 174
BmrFI	CCNGG	2 cut(s)	169, 174
BpmI	CTGGAG	2 cut(s)	80, 174
Bsa29I	ATCGAT	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 357
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	169, 174
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	199, 357
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	252, 302
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	172, 370
BshVI	ATCGAT	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	199, 357
BsmAI	GTCTC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	172, 370
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	351
BspANI	GGCC	2 cut(s)	172, 370
BspCNI	CTCAG	2 cut(s)	253, 301
BspDI	ATCGAT	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	169, 174
Bst6I	CTCTTC	2 cut(s)	2, 192
BstDEI	CTNAG	2 cut(s)	261, 288
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 367
BstNI	CCWGG	2 cut(s)	169, 174
BstSCI	CCNGG	2 cut(s)	167, 172
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	172, 370
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	2 cut(s)	282, 366
BtsCI	GGATG	1 cut(s)	18
CfoI	GCGC	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	7 cut(s)	44, 58, 152, 172, 347, 356, 370
CviKI_1	RGCY	7 cut(s)	44, 58, 152, 172, 347, 356, 370
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	2 cut(s)	261, 288
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	2, 192
EarI	CTCTTC	2 cut(s)	2, 192
Eco130I	CCWWGG	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	167, 172
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	355
FaiI	YATR	1 cut(s)	353
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	2 cut(s)	80, 174
HaeIII	GGCC	2 cut(s)	172, 370
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	27, 73, 88, 255
Hpy188I	TCNGA	5 cut(s)	78, 87, 241, 262, 291
Hpy188III	TCNNGA	3 cut(s)	18, 35, 53
HpyCH4V	TGCA	2 cut(s)	47, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 367
HpyF3I	CTNAG	2 cut(s)	261, 288
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	44, 138, 154, 159, 181, 186, 308, 342
Lsp1109I	GCAGC	1 cut(s)	31
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	19, 209, 322, 338
MluCI	AATT	3 cut(s)	99, 108, 340
MluI	ACGCGT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	82, 249
MnlI	CCTC	7 cut(s)	3, 137, 149, 152, 193, 218, 360
MspR9I	CCNGG	2 cut(s)	169, 174
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	169, 174
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	353, 367
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	355
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	27, 73
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	2 cut(s)	82, 249
PpsI	GAGTC	2 cut(s)	82, 249
Psp6I	CCWGG	2 cut(s)	167, 172
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	167, 172
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	31
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	2 cut(s)	82, 249
ScrFI	CCNGG	2 cut(s)	169, 174
SetI	ASST	6 cut(s)	46, 60, 163, 170, 204, 214
Sse9I	AATT	3 cut(s)	99, 108, 340
StyD4I	CCNGG	2 cut(s)	167, 172
StyI	CCWWGG	1 cut(s)	351
TaqI	TCGA	6 cut(s)	17, 30, 52, 142, 216, 253
TasI	AATT	3 cut(s)	99, 108, 340
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	2 cut(s)	27, 73
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	129
XapI	RAATTY	1 cut(s)	340
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.