RLG00000002992

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004885
Physical Location & Seq
Forward (+)
42750266 .. 42751345
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002992

Sequence Viewer

Length: 447 bp
ATGCTTCGAGGGGTGGCTGGAGGAGGTGCGACCTGGCCTGGATGCGTGGGGCGAAGGGAAGGCAAAGTGCTCTCTTCCTTATTTGCATTTGGTTCAATTTTGCAGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATTGATAATGGAGGAATGAGAAAATTGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACATGGATAGGAAAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCCCGGGGCGGCGTCGTCGATAATCTTTTTGTTGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

9.77

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 375
AclWI GGATC 3 cut(s) 172, 360, 373
AcsI RAATTY 2 cut(s) 114, 312
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 96
AjnI CCWGG 2 cut(s) 32, 37
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 264, 411
AlwI GGATC 3 cut(s) 172, 360, 373
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 2 cut(s) 35, 339
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 114, 312
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 2 cut(s) 370, 371
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 34, 39
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 2 cut(s) 264, 411
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 132, 376
BlsI GCNGC 2 cut(s) 133, 377
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 4 cut(s) 34, 39, 370, 371
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 3 cut(s) 162, 163, 367
BmrFI CCNGG 4 cut(s) 34, 39, 370, 371
BmsI GCATC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 370, 371
Bsa29I ATCGAT 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 323, 369, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 2 cut(s) 34, 39
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 323, 369, 370
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 184, 225, 275
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 328
BshFI GGCC 2 cut(s) 37, 341
BshVI ATCGAT 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 264, 411
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 2 cut(s) 37, 341
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 166, 177, 365
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 1 cut(s) 375
BspANI GGCC 2 cut(s) 37, 341
BspCNI CTCAG 3 cut(s) 183, 226, 274
BspDI ATCGAT 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 162, 163, 367
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 3 cut(s) 172, 360, 373
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 323, 369, 370
BssMI GATC 3 cut(s) 166, 177, 365
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 34, 39
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 170, 234, 261
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 169, 180, 368
BstMAI GTCTC 2 cut(s) 264, 411
BstMBI GATC 3 cut(s) 166, 177, 365
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 2 cut(s) 34, 39
BstSCI CCNGG 4 cut(s) 32, 37, 368, 369
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 177, 365
BstYI RGATCY 2 cut(s) 177, 365
Bsu15I ATCGAT 1 cut(s) 442
BsuRI GGCC 2 cut(s) 37, 341
BsuTUI ATCGAT 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 323
BtgZI GCGATG 2 cut(s) 255, 340
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 161
Cfr9I CCCGGG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 442
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 249
CviAII CATG 2 cut(s) 274, 324
CviJI RGCY 7 cut(s) 17, 37, 131, 174, 319, 328, 341
CviKI_1 RGCY 7 cut(s) 17, 37, 131, 174, 319, 328, 341
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 3 cut(s) 170, 234, 261
DpnI GATC 3 cut(s) 168, 179, 367
DpnII GATC 3 cut(s) 166, 177, 365
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 323
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 32, 37
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 2 cut(s) 277, 327
FaiI YATR 2 cut(s) 275, 325
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 273, 323
Fnu4HI GCNGC 2 cut(s) 132, 376
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 132, 376
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 132, 376
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 37, 341
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 2 cut(s) 277, 327
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 228, 419
HpaII CCGG 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 235, 264, 424
Hpy188III TCNNGA 2 cut(s) 159, 416
Hpy99I CGWCG 2 cut(s) 383, 386
HpyAV CCTTC 2 cut(s) 48, 53
HpyCH4V TGCA 4 cut(s) 86, 103, 134, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 170, 234, 261
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 2 cut(s) 277, 327
HspAI GCGC 1 cut(s) 219
KflI GGGWCCC 1 cut(s) 161
Kzo9I GATC 3 cut(s) 166, 177, 365
LpnPI CCDG 9 cut(s) 3, 19, 24, 46, 51, 188, 280, 314, 383
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 32
MalI GATC 3 cut(s) 168, 179, 367
MboI GATC 3 cut(s) 166, 177, 365
MboII GAAGA 4 cut(s) 66, 122, 147, 310
MflI RGATCY 2 cut(s) 177, 365
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 4 cut(s) 96, 114, 209, 312
MlyI GAGTC 2 cut(s) 222, 413
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 5 cut(s) 14, 17, 191, 331, 419
MroXI GAANNNNTTC 1 cut(s) 114
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 4 cut(s) 34, 39, 370, 371
MvaI CCWGG 2 cut(s) 34, 39
MwoI GCNNNNNNNGC 1 cut(s) 325
NciI CCSGG 2 cut(s) 370, 371
NcoI CCATGG 1 cut(s) 323
NdeII GATC 3 cut(s) 166, 177, 365
NlaIII CATG 2 cut(s) 277, 327
NlaIV GGNNCC 3 cut(s) 162, 163, 367
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 133, 377
PleI GAGTC 2 cut(s) 222, 413
PpsI GAGTC 2 cut(s) 222, 413
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 32, 37
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 32, 37
PspN4I GGNNCC 3 cut(s) 162, 163, 367
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 2 cut(s) 177, 365
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SatI GCNGC 2 cut(s) 132, 376
Sau3AI GATC 3 cut(s) 166, 177, 365
Sau96I GGNCC 1 cut(s) 161
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 2 cut(s) 222, 413
ScrFI CCNGG 4 cut(s) 34, 39, 370, 371
SduI GDGCHC 1 cut(s) 72
SetI ASST 4 cut(s) 28, 35, 133, 187
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 161
SmaI CCCGGG 1 cut(s) 371
Sse9I AATT 4 cut(s) 96, 114, 209, 312
SsiI CCGC 1 cut(s) 375
StyD4I CCNGG 4 cut(s) 32, 37, 368, 369
StyI CCWWGG 1 cut(s) 323
TaqI TCGA 5 cut(s) 7, 226, 384, 415, 442
TasI AATT 4 cut(s) 96, 114, 209, 312
TatI WGTACW 1 cut(s) 248
TauI GCSGC 1 cut(s) 378
TseI GCWGC 1 cut(s) 131
TspMI CCCGGG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 114, 312
XmaI CCCGGG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.