Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030579.1

Orthogroup ID

OG0004885

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 927

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030579.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 280 bp

ccagaaatgtcgtgcagaggctgtaaggaggatccttagcctcgcctttgctctgccatggattcccgacacgcatctctacgccgccgaacggctgggcaaagaggccgataacaacaacatcaccgtaggatcccggggctgcgtcgtcgataatctttttattggcaaatccctcaatcgagactccgatatcgtctttgattatcgatataagctcaccaagtacttccagtacctgcaaggcgattattacattgcacctctcttcatggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046863 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

AAA

Protein Analysis

92

Amino Acids

10.64

Weight (kDa)

8.62

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004885)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066831
rosa_laevigata	RLG00000001037 RLG00000002992 RLG00000009041 RLG00000013095 RLG00000014399 RLG00000025318 RLG00000032727
rosa_multiflora	Rmu_sc0007876.1_g000001 Rmu_sc0009833.1_g000011 Rmu_sc0030579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133360 Rroxscaffold_2G00137040 Rroxscaffold_5G00332840 Rroxscaffold_7G00190740
rosa_samantha	Rh2BG194400 Rh2BG453200 Rh2DG329000 Rh2DG463400 Rh3AG210000 Rh3AG316800 Rh3CG342100 Rh3CG356100 Rh4AG138700 Rh5AG319900 Rh6AG116600 Rh7AG447000 Rh7AG447100
rosa_wichuraiana	Rw0G020530 Rw3G028320 Rw5G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	4 cut(s)	26, 39, 127, 140
AfaI	GTAC	2 cut(s)	228, 237
AfiI	CCNNNNNNNGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	4 cut(s)	26, 39, 127, 140
AlwNI	CAGNNNCTG	2 cut(s)	21, 239
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	142
AsuC2I	CCSGG	2 cut(s)	137, 138
AsuHPI	GGTGA	2 cut(s)	116, 212
AvaI	CYCGRG	1 cut(s)	136
BamHI	GGATCC	2 cut(s)	31, 132
BbvI	GCAGC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	137, 138
BcoDI	GTCTC	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	85, 143
BlsI	GCNGC	2 cut(s)	86, 144
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	137, 138
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	33, 134
BmrFI	CCNGG	2 cut(s)	137, 138
BmsI	GCATC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	36
BpuMI	CCSGG	2 cut(s)	137, 138
Bsa29I	ATCGAT	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	57, 136, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	57, 136, 137
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	31, 132
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	33, 134
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	4 cut(s)	26, 39, 127, 140
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	57, 136, 137
BssMI	GATC	2 cut(s)	31, 132
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	34, 135
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	31, 132
BstSCI	CCNGG	2 cut(s)	135, 136
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	31, 132
BstYI	RGATCY	2 cut(s)	31, 132
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	247
CaiI	CAGNNNCTG	2 cut(s)	21, 239
Cfr9I	CCCGGG	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	209
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	227, 236
CviAII	CATG	2 cut(s)	58, 272
CviJI	RGCY	6 cut(s)	21, 40, 95, 108, 142, 218
CviKI_1	RGCY	6 cut(s)	21, 40, 95, 108, 142, 218
CviQI	GTAC	2 cut(s)	227, 236
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	33, 134
DpnII	GATC	2 cut(s)	31, 132
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	61, 275
FaiI	YATR	4 cut(s)	59, 214, 273, 278
FatI	CATG	2 cut(s)	57, 271
Fnu4HI	GCNGC	2 cut(s)	85, 143
Fsp4HI	GCNGC	2 cut(s)	85, 143
GluI	GCNGC	2 cut(s)	85, 143
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	61, 275
HinfI	GANTC	2 cut(s)	62, 186
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	116, 212
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	66, 183
Hpy99I	CGWCG	2 cut(s)	150, 153
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	15, 242, 261
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	61, 275
Kzo9I	GATC	2 cut(s)	31, 132
LpnPI	CCDG	5 cut(s)	15, 81, 150, 246, 252
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	83
MalI	GATC	2 cut(s)	33, 134
MboI	GATC	2 cut(s)	31, 132
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	2 cut(s)	31, 132
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	11, 22, 51, 98, 186, 274
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	137, 138
NciI	CCSGG	2 cut(s)	137, 138
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	31, 132
NlaIII	CATG	2 cut(s)	61, 275
NlaIV	GGNNCC	2 cut(s)	33, 134
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	86, 144
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	33, 134
PstNI	CAGNNNCTG	2 cut(s)	21, 239
PsuI	RGATCY	2 cut(s)	31, 132
RsaI	GTAC	2 cut(s)	228, 237
RsaNI	GTAC	2 cut(s)	227, 236
SatI	GCNGC	2 cut(s)	85, 143
Sau3AI	GATC	2 cut(s)	31, 132
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	137, 138
SetI	ASST	3 cut(s)	220, 241, 266
SfaNI	GCATC	1 cut(s)	83
SmaI	CCCGGG	1 cut(s)	138
SsiI	CCGC	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	135, 136
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	3 cut(s)	151, 182, 209
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	260
TspMI	CCCGGG	1 cut(s)	136
XmaI	CCCGGG	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.