Rh2DG463400

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004885
Physical Location & Seq
Forward (+)
66949708 .. 66983711
34004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG463400.1

Sequence Viewer

Length: 912 bp
ATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGGCTGGACTCGTGGGGCGAAGGGAAGGCAAAGTGGTGAGGAGTGAGGACTCTGTGAGCTACTTATACAGCCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCCCGGGGAGGCGTCGTCGATAATCTTTATGTAGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGACAAAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTATTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTCCCACTCTCTCTCAATTGACAAGGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGGCATTTGATACCCTGCTCCGGAAGCTACAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTGGTATGCAGGAGTAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGCAAGAATTTAAGATTTCTGTTGATTGTTTTTTATCATGTCTTGGTGCACGATTGAGTCTGACCCAGTCGAATGGTTACCATCCCACCACACATAGTCACCTGGGTTTGGGCACAATTCATATTAGGGGTCATCATTTAGCCCGTGGGCCTAGTGGGCCGATGGAGGCCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

303

Amino Acids

33.19

Weight (kDa)

9.83

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 109 - 210 1.1e-26 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 636
AciI CCGC 5 cut(s) 268, 386, 407, 543, 907
AclWI GGATC 2 cut(s) 138, 151
AcsI RAATTY 3 cut(s) 312, 595, 743
AcyI GRCGYC 2 cut(s) 156, 396
AfiI CCNNNNNNNGG 2 cut(s) 636, 844
AgsI TTSAA 3 cut(s) 274, 592, 600
AjnI CCWGG 4 cut(s) 32, 105, 615, 837
AluBI AGCT 5 cut(s) 93, 337, 342, 404, 643
AluI AGCT 5 cut(s) 93, 337, 342, 404, 643
Alw21I GWGCWC 2 cut(s) 406, 787
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 2 cut(s) 138, 151
Ama87I CYCGRG 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 636
AoxI GGCC 5 cut(s) 117, 442, 884, 893, 903
ApaI GGGCCC 1 cut(s) 446
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 3 cut(s) 312, 595, 743
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspS9I GGNCC 6 cut(s) 376, 442, 443, 884, 893, 904
AsuC2I CCSGG 2 cut(s) 148, 149
AsuHPI GGTGA 3 cut(s) 82, 241, 827
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 3 cut(s) 446, 787, 851
BamHI GGATCC 1 cut(s) 143
BanII GRGCYC 3 cut(s) 406, 429, 446
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 2 cut(s) 406, 787
BbvI GCAGC 1 cut(s) 706
BccI CCATC 2 cut(s) 825, 892
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 4 cut(s) 34, 107, 617, 839
BcnI CCSGG 2 cut(s) 148, 149
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 888
BglI GCCNNNNNGGC 1 cut(s) 892
BisI GCNGC 2 cut(s) 544, 720
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 2 cut(s) 545, 721
Bme1390I CCNGG 6 cut(s) 34, 107, 148, 149, 617, 839
Bme18I GGWCC 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 6 cut(s) 376, 442, 443, 884, 893, 904
BmiI GGNNCC 4 cut(s) 145, 378, 444, 445
BmrFI CCNGG 6 cut(s) 34, 107, 148, 149, 617, 839
BmrI ACTGGG 2 cut(s) 295, 796
BmsI GCATC 1 cut(s) 677
BmuI ACTGGG 2 cut(s) 295, 796
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 338
BpuMI CCSGG 2 cut(s) 148, 149
BsaHI GRCGYC 2 cut(s) 156, 396
BsaJI CCNNGG 7 cut(s) 33, 106, 147, 148, 355, 838, 880
BsaWI WCCGGW 1 cut(s) 636
BsaXI ACNNNNNCTCC 6 cut(s) 144, 174, 657, 684, 687, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 636, 844
Bse1I ACTGG 2 cut(s) 290, 802
BseAI TCCGGA 1 cut(s) 636
BseBI CCWGG 4 cut(s) 34, 107, 617, 839
BseDI CCNNGG 7 cut(s) 33, 106, 147, 148, 355, 838, 880
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 2 cut(s) 636, 844
BseMII CTCAG 2 cut(s) 352, 473
BseNI ACTGG 2 cut(s) 290, 802
BseRI GAGGAG 2 cut(s) 36, 88
BseSI GKGCMC 3 cut(s) 446, 787, 851
BseXI GCAGC 1 cut(s) 706
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 5 cut(s) 119, 444, 886, 895, 905
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 406, 787
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 148, 399, 637
BslFI GGGAC 2 cut(s) 362, 641
BslI CCNNNNNNNGG 2 cut(s) 636, 844
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 362, 641
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 5 cut(s) 119, 444, 886, 895, 905
BsoBI CYCGRG 1 cut(s) 147
Bsp120I GGGCCC 1 cut(s) 442
Bsp1286I GDGCHC 5 cut(s) 406, 429, 446, 787, 851
Bsp13I TCCGGA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 143, 304
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 5 cut(s) 268, 386, 407, 543, 907
BspANI GGCC 5 cut(s) 119, 444, 886, 895, 905
BspCNI CTCAG 2 cut(s) 351, 472
BspEI TCCGGA 1 cut(s) 636
BspLI GGNNCC 4 cut(s) 145, 378, 444, 445
BspPI GGATC 2 cut(s) 138, 151
BsrI ACTGG 2 cut(s) 290, 802
BssECI CCNNGG 7 cut(s) 33, 106, 147, 148, 355, 838, 880
BssMI GATC 2 cut(s) 143, 304
BssNI GRCGYC 2 cut(s) 156, 396
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 4 cut(s) 34, 107, 617, 839
BstACI GRCGYC 2 cut(s) 156, 396
BstAPI GCANNNNNTGC 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 335, 737, 907
BstDEI CTNAG 2 cut(s) 338, 459
BstDSI CCRYGG 1 cut(s) 880
BstEII GGTNACC 1 cut(s) 812
BstF5I GGATG 1 cut(s) 817
BstKTI GATC 2 cut(s) 146, 307
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 143, 304
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 6 cut(s) 35, 339, 512, 640, 674, 892
BstNI CCWGG 4 cut(s) 34, 107, 617, 839
BstNSI RCATGY 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 812
BstSCI CCNGG 6 cut(s) 32, 105, 146, 147, 615, 837
BstSLI GKGCMC 3 cut(s) 446, 787, 851
BstV1I GCAGC 1 cut(s) 706
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 5 cut(s) 119, 444, 886, 895, 905
BtgI CCRYGG 1 cut(s) 880
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 817
Cac8I GCNNGC 3 cut(s) 335, 737, 907
Cfr13I GGNCC 6 cut(s) 376, 442, 443, 884, 893, 904
Cfr9I CCCGGG 1 cut(s) 147
CseI GACGC 2 cut(s) 145, 404
CviAII CATG 3 cut(s) 512, 547, 774
DdeI CTNAG 2 cut(s) 338, 459
DpnI GATC 2 cut(s) 145, 306
DpnII GATC 2 cut(s) 143, 304
EciI GGCGGA 2 cut(s) 375, 396
Ecl136II GAGCTC 1 cut(s) 404
Eco24I GRGCYC 3 cut(s) 406, 429, 446
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 404
EcoO109I RGGNCCY 2 cut(s) 442, 443
EcoO65I GGTNACC 1 cut(s) 812
EcoRI GAATTC 2 cut(s) 312, 595
EcoRII CCWGG 4 cut(s) 32, 105, 615, 837
EcoRV GATATC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 3 cut(s) 406, 429, 446
FaeI CATG 3 cut(s) 515, 550, 777
FaqI GGGAC 2 cut(s) 362, 641
FatI CATG 3 cut(s) 511, 546, 773
Fnu4HI GCNGC 2 cut(s) 544, 720
FokI GGATG 1 cut(s) 804
FriOI GRGCYC 3 cut(s) 406, 429, 446
Fsp4HI GCNGC 2 cut(s) 544, 720
FspBI CTAG 1 cut(s) 888
GluI GCNGC 2 cut(s) 544, 720
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 5 cut(s) 119, 444, 886, 895, 905
HapII CCGG 3 cut(s) 148, 399, 637
HgaI GACGC 2 cut(s) 145, 404
Hin1I GRCGYC 2 cut(s) 156, 396
Hin1II CATG 3 cut(s) 515, 550, 777
HinfI GANTC 6 cut(s) 42, 83, 197, 382, 470, 793
HpaII CCGG 3 cut(s) 148, 399, 637
HphI GGTGA 3 cut(s) 82, 241, 827
Hpy166II GTNNAC 2 cut(s) 283, 785
Hpy188I TCNGA 4 cut(s) 202, 469, 707, 798
Hpy188III TCNNGA 5 cut(s) 194, 379, 528, 592, 637
Hpy8I GTNNAC 2 cut(s) 283, 785
Hpy99I CGWCG 4 cut(s) 161, 164, 398, 425
HpyAV CCTTC 4 cut(s) 48, 53, 247, 544
HpyCH4V TGCA 4 cut(s) 587, 689, 735, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 339, 512, 640, 674, 892
HpyF3I CTNAG 2 cut(s) 338, 459
Hsp92I GRCGYC 2 cut(s) 156, 396
Hsp92II CATG 3 cut(s) 515, 550, 777
Kpn2I TCCGGA 1 cut(s) 636
Kzo9I GATC 2 cut(s) 143, 304
LmnI GCTCC 4 cut(s) 401, 409, 639, 665
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 1 cut(s) 677
MaeI CTAG 1 cut(s) 888
MaeIII GTNAC 2 cut(s) 812, 833
MalI GATC 2 cut(s) 145, 306
MboI GATC 2 cut(s) 143, 304
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 5 cut(s) 406, 429, 446, 787, 851
MluCI AATT 5 cut(s) 312, 486, 595, 743, 852
MlyI GAGTC 5 cut(s) 36, 77, 191, 376, 802
MmeI TCCRAC 1 cut(s) 278
Mph1103I ATGCAT 1 cut(s) 589
MroI TCCGGA 1 cut(s) 636
MseI TTAA 2 cut(s) 258, 747
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 3 cut(s) 148, 399, 637
MspR9I CCNGG 6 cut(s) 34, 107, 148, 149, 617, 839
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 4 cut(s) 34, 107, 617, 839
MwoI GCNNNNNNNGC 6 cut(s) 35, 339, 512, 640, 674, 892
NciI CCSGG 2 cut(s) 148, 149
NdeII GATC 2 cut(s) 143, 304
NlaIII CATG 3 cut(s) 515, 550, 777
NlaIV GGNNCC 4 cut(s) 145, 378, 444, 445
NmuCI GTSAC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 470
PflFI GACNNNGTC 1 cut(s) 802
PkrI GCNGC 2 cut(s) 545, 721
PleI GAGTC 5 cut(s) 36, 77, 191, 376, 801
PpsI GAGTC 5 cut(s) 36, 77, 191, 376, 801
Psp124BI GAGCTC 1 cut(s) 406
Psp6I CCWGG 4 cut(s) 32, 105, 615, 837
PspEI GGTNACC 1 cut(s) 812
PspGI CCWGG 4 cut(s) 32, 105, 615, 837
PspN4I GGNNCC 4 cut(s) 145, 378, 444, 445
PspOMI GGGCCC 1 cut(s) 442
PspPI GGNCC 6 cut(s) 376, 442, 443, 884, 893, 904
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 406
SaqAI TTAA 2 cut(s) 258, 747
SatI GCNGC 2 cut(s) 544, 720
Sau3AI GATC 2 cut(s) 143, 304
Sau96I GGNCC 6 cut(s) 376, 442, 443, 884, 893, 904
SchI GAGTC 5 cut(s) 36, 77, 191, 376, 802
ScrFI CCNGG 6 cut(s) 34, 107, 148, 149, 617, 839
SduI GDGCHC 5 cut(s) 406, 429, 446, 787, 851
SfaNI GCATC 1 cut(s) 677
SfiI GGCCNNNNNGGCC 1 cut(s) 892
SinI GGWCC 1 cut(s) 376
SmaI CCCGGG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 5 cut(s) 312, 486, 595, 743, 852
SsiI CCGC 5 cut(s) 268, 386, 407, 543, 907
SspMI CTAG 1 cut(s) 888
SstI GAGCTC 1 cut(s) 406
StyD4I CCNGG 6 cut(s) 32, 105, 146, 147, 615, 837
TaqI TCGA 7 cut(s) 7, 162, 193, 220, 351, 423, 806
TaqII GACCGA 1 cut(s) 369
TasI AATT 5 cut(s) 312, 486, 595, 743, 852
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 258, 747
Tru9I TTAA 2 cut(s) 258, 747
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 2 cut(s) 563, 845
TspMI CCCGGG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 802
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 3 cut(s) 312, 595, 743
XceI RCATGY 1 cut(s) 515
XmaI CCCGGG 1 cut(s) 147
XspI CTAG 1 cut(s) 888
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.