Rmu_sc0009833.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009833.1
OG0004885
Physical Location & Seq
Reverse (-)
60864 .. 62182
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009833.1_g000011.1.cds

Sequence Viewer

Length: 729 bp
atgattgaaattgatgaaatctctctcgcaaaggcaatgcttcaaggcttggctggaggaggtgcgacctggcctggacgcgtggggcgaagggaaggcaaagtgttggaagaaattcgtcaaaagcgagctgcagaaagattgagcaaaacttcttcgggacccgatctcagccagatcccacctatcgataatggaggaatgagaaaatcggagagcgcaaatcgactctctgagagcgatgttagtactttagtttctcagataagagacttggataggaagaatgcagaactggaagaacaaaacaaaaatttggcttccatggtaggactcttgtgtttgttgtgcttgtttgtttcttttccgaaagttttcacttcaggagggtttggttatgggcaatggtcagtttggttgcctaattatattgtcgacttatacaggctgggcaaagaggccgataacaacaacatcgccgtaggatcccggggcggcgtcgtcgataatctttttgtcgtttcttttccgaaagttttcacttcaggagggtttggttatgggcaatggtcagtttggttgcctaattatattgtcgacttatacaggctgggcaaaaaggctgataacaacaacatcgccgtaggatcccggggcggcgtcgtcgataatctttttgtctgcaaatccctcaatcgagactccgatatcatctttgattatcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.6

Weight (kDa)

8.38

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 435, 597
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 495, 657
AclWI GGATC 5 cut(s) 172, 480, 493, 642, 655
AcsI RAATTY 2 cut(s) 114, 313
AcuI CTGAAG 2 cut(s) 366, 528
AcyI GRCGYC 2 cut(s) 498, 660
AfaI GTAC 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 8, 44
AjnI CCWGG 2 cut(s) 68, 73
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 2 cut(s) 264, 693
AlwI GGATC 5 cut(s) 172, 480, 493, 642, 655
Ama87I CYCGRG 2 cut(s) 489, 651
AoxI GGCC 2 cut(s) 71, 459
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 114, 313
Asp700I GAANNNNTTC 3 cut(s) 114, 374, 536
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 4 cut(s) 490, 491, 652, 653
AvaI CYCGRG 2 cut(s) 489, 651
AvaII GGWCC 1 cut(s) 161
BamHI GGATCC 2 cut(s) 485, 647
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 2 cut(s) 464, 626
BciT130I CCWGG 2 cut(s) 70, 75
BcnI CCSGG 4 cut(s) 490, 491, 652, 653
BcoDI GTCTC 2 cut(s) 264, 693
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 132, 496, 658
BlsI GCNGC 3 cut(s) 133, 497, 659
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 6 cut(s) 70, 75, 490, 491, 652, 653
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 489, 651
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 4 cut(s) 162, 163, 487, 649
BmrFI CCNGG 6 cut(s) 70, 75, 490, 491, 652, 653
BpmI CTGGAG 1 cut(s) 75
BpuMI CCSGG 4 cut(s) 490, 491, 652, 653
Bsa29I ATCGAT 2 cut(s) 189, 724
BsaHI GRCGYC 2 cut(s) 498, 660
BsaJI CCNNGG 5 cut(s) 324, 489, 490, 651, 652
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 3 cut(s) 42, 410, 572
BseBI CCWGG 2 cut(s) 70, 75
BseCI ATCGAT 2 cut(s) 189, 724
BseDI CCNNGG 5 cut(s) 324, 489, 490, 651, 652
BseMI GCAATG 3 cut(s) 42, 410, 572
BseMII CTCAG 3 cut(s) 184, 225, 275
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 2 cut(s) 448, 610
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 73, 461
BshVI ATCGAT 2 cut(s) 189, 724
BsiHKCI CYCGRG 2 cut(s) 489, 651
BsiSI CCGG 2 cut(s) 490, 652
BslFI GGGAC 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 264, 693
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 2 cut(s) 73, 461
BsoBI CYCGRG 2 cut(s) 489, 651
Bsp143I GATC 4 cut(s) 166, 177, 485, 647
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 2 cut(s) 495, 657
BspANI GGCC 2 cut(s) 73, 461
BspCNI CTCAG 3 cut(s) 183, 226, 274
BspDI ATCGAT 2 cut(s) 189, 724
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 4 cut(s) 162, 163, 487, 649
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 5 cut(s) 172, 480, 493, 642, 655
BsrDI GCAATG 3 cut(s) 42, 410, 572
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 5 cut(s) 324, 489, 490, 651, 652
BssMI GATC 4 cut(s) 166, 177, 485, 647
BssNI GRCGYC 2 cut(s) 498, 660
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 70, 75
BstACI GRCGYC 2 cut(s) 498, 660
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 170, 234, 261
BstDSI CCRYGG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 4 cut(s) 169, 180, 488, 650
BstMAI GTCTC 2 cut(s) 264, 693
BstMBI GATC 4 cut(s) 166, 177, 485, 647
BstNI CCWGG 2 cut(s) 70, 75
BstSCI CCNGG 6 cut(s) 68, 73, 488, 489, 650, 651
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 3 cut(s) 177, 485, 647
BstYI RGATCY 3 cut(s) 177, 485, 647
Bsu15I ATCGAT 2 cut(s) 189, 724
BsuRI GGCC 2 cut(s) 73, 461
BsuTUI ATCGAT 2 cut(s) 189, 724
BtgI CCRYGG 1 cut(s) 324
BtgZI GCGATG 3 cut(s) 255, 460, 622
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 161
Cfr9I CCCGGG 2 cut(s) 489, 651
ClaI ATCGAT 2 cut(s) 189, 724
CseI GACGC 3 cut(s) 87, 487, 649
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 325
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 3 cut(s) 170, 234, 261
DpnI GATC 4 cut(s) 168, 179, 487, 649
DpnII GATC 4 cut(s) 166, 177, 485, 647
Eco130I CCWWGG 1 cut(s) 324
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 366, 528
Eco88I CYCGRG 2 cut(s) 489, 651
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 68, 73
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 328
FaiI YATR 7 cut(s) 326, 399, 429, 442, 561, 591, 604
FaqI GGGAC 1 cut(s) 174
FatI CATG 1 cut(s) 324
FblI GTMKAC 2 cut(s) 435, 597
Fnu4HI GCNGC 3 cut(s) 132, 496, 658
Fsp4HI GCNGC 3 cut(s) 132, 496, 658
GlaI GCGC 1 cut(s) 220
GluI GCNGC 3 cut(s) 132, 496, 658
GsaI CCCAGC 2 cut(s) 452, 614
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 2 cut(s) 73, 461
HapII CCGG 2 cut(s) 490, 652
HgaI GACGC 3 cut(s) 87, 487, 649
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 2 cut(s) 498, 660
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 2 cut(s) 436, 598
HindII GTYRAC 2 cut(s) 436, 598
HinfI GANTC 3 cut(s) 228, 333, 701
HpaII CCGG 2 cut(s) 490, 652
Hpy166II GTNNAC 2 cut(s) 436, 598
Hpy188I TCNGA 6 cut(s) 214, 235, 264, 369, 531, 706
Hpy188III TCNNGA 4 cut(s) 159, 384, 546, 698
Hpy8I GTNNAC 2 cut(s) 436, 598
Hpy99I CGWCG 4 cut(s) 503, 506, 665, 668
HpyAV CCTTC 2 cut(s) 84, 89
HpyCH4V TGCA 3 cut(s) 134, 290, 684
HpyF3I CTNAG 3 cut(s) 170, 234, 261
Hsp92I GRCGYC 2 cut(s) 498, 660
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 1 cut(s) 219
KflI GGGWCCC 1 cut(s) 161
Kzo9I GATC 4 cut(s) 166, 177, 485, 647
Lsp1109I GCAGC 1 cut(s) 118
MalI GATC 4 cut(s) 168, 179, 487, 649
MboI GATC 4 cut(s) 166, 177, 485, 647
MboII GAAGA 4 cut(s) 122, 147, 295, 311
MflI RGATCY 3 cut(s) 177, 485, 647
MluCI AATT 5 cut(s) 9, 114, 313, 424, 586
MluI ACGCGT 1 cut(s) 79
MlyI GAGTC 3 cut(s) 222, 327, 695
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 7 cut(s) 50, 53, 191, 380, 451, 542, 701
MroXI GAANNNNTTC 3 cut(s) 114, 374, 536
MspI CCGG 2 cut(s) 490, 652
MspR9I CCNGG 6 cut(s) 70, 75, 490, 491, 652, 653
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 70, 75
MvnI CGCG 1 cut(s) 81
NciI CCSGG 4 cut(s) 490, 491, 652, 653
NcoI CCATGG 1 cut(s) 324
NdeII GATC 4 cut(s) 166, 177, 485, 647
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 4 cut(s) 162, 163, 487, 649
PcsI WCGNNNNNNNCGW 2 cut(s) 85, 124
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 3 cut(s) 114, 374, 536
PkrI GCNGC 3 cut(s) 133, 497, 659
PleI GAGTC 3 cut(s) 222, 327, 695
PpsI GAGTC 3 cut(s) 222, 327, 695
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 68, 73
PspFI CCCAGC 2 cut(s) 448, 610
PspGI CCWGG 2 cut(s) 68, 73
PspN4I GGNNCC 4 cut(s) 162, 163, 487, 649
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 3 cut(s) 177, 485, 647
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SalI GTCGAC 2 cut(s) 434, 596
SatI GCNGC 3 cut(s) 132, 496, 658
Sau3AI GATC 4 cut(s) 166, 177, 485, 647
Sau96I GGNCC 1 cut(s) 161
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 3 cut(s) 222, 327, 695
ScrFI CCNGG 6 cut(s) 70, 75, 490, 491, 652, 653
SetI ASST 4 cut(s) 64, 71, 133, 187
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 161
SmaI CCCGGG 2 cut(s) 491, 653
Sse9I AATT 5 cut(s) 9, 114, 313, 424, 586
SsiI CCGC 2 cut(s) 495, 657
StyD4I CCNGG 6 cut(s) 68, 73, 488, 489, 650, 651
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 8 cut(s) 189, 226, 435, 504, 597, 666, 697, 724
TasI AATT 5 cut(s) 9, 114, 313, 424, 586
TatI WGTACW 1 cut(s) 248
TauI GCSGC 2 cut(s) 498, 660
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 30
TspMI CCCGGG 2 cut(s) 489, 651
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 114, 313
XmaI CCCGGG 2 cut(s) 489, 651
XmiI GTMKAC 2 cut(s) 435, 597
XmnI GAANNNNTTC 3 cut(s) 114, 374, 536
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.