Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004885

Physical Location & Seq

Genomic Coordinates Forward (+)

64031233 .. 64031520

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG453200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGGCTGGACTCGTGGGGCGAAGGGAAGGCAAAGTGGTGAGGAGTGAGGACTCTGTGAGCTACTTATACAGCCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCCCGGGGAGGCGTCGTCGATAATCTTTATGTAGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGACAAAAGGTCACCTGCAAGGCGATTATTACATTGCGCCTCTCTTCATGGTATGATGGACTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046863 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

AAA

Protein Analysis

95

Amino Acids

10.34

Weight (kDa)

9.46

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004885)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066831
rosa_laevigata	RLG00000001037 RLG00000002992 RLG00000009041 RLG00000013095 RLG00000014399 RLG00000025318 RLG00000032727
rosa_multiflora	Rmu_sc0007876.1_g000001 Rmu_sc0009833.1_g000011 Rmu_sc0030579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133360 Rroxscaffold_2G00137040 Rroxscaffold_5G00332840 Rroxscaffold_7G00190740
rosa_samantha	Rh2BG194400 Rh2BG453200 Rh2DG329000 Rh2DG463400 Rh3AG210000 Rh3AG316800 Rh3CG342100 Rh3CG356100 Rh4AG138700 Rh5AG319900 Rh6AG116600 Rh7AG447000 Rh7AG447100
rosa_wichuraiana	Rw0G020530 Rw3G028320 Rw5G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	138, 151
AcyI	GRCGYC	1 cut(s)	156
AhdI	GACNNNNNGTC	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	32, 105
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	138, 151
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	258
AsuC2I	CCSGG	2 cut(s)	148, 149
AsuHPI	GGTGA	2 cut(s)	82, 223
AvaI	CYCGRG	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	44
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	34, 107
BcnI	CCSGG	2 cut(s)	148, 149
BcoDI	GTCTC	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	242
Bme1390I	CCNGG	4 cut(s)	34, 107, 148, 149
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	4 cut(s)	34, 107, 148, 149
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	148, 149
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	33, 106, 147, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse3DI	GCAATG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	34, 107
BseDI	CCNNGG	4 cut(s)	33, 106, 147, 148
BseMI	GCAATG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	36, 88
BshFI	GGCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	138, 151
BsrDI	GCAATG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	33, 106, 147, 148
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	34, 107
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	34, 107
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	4 cut(s)	32, 105, 146, 147
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	258
Cfr9I	CCCGGG	1 cut(s)	147
CseI	GACGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	5 cut(s)	17, 38, 93, 105, 119
CviKI_1	RGCY	5 cut(s)	17, 38, 93, 105, 119
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	268
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	147
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	32, 105
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	100, 174, 268, 273
FatI	CATG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	42, 83, 197
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	2 cut(s)	82, 223
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	2 cut(s)	161, 164
HpyAV	CCTTC	2 cut(s)	48, 53
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	8 cut(s)	3, 19, 24, 46, 92, 119, 161, 247
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	255
MflI	RGATCY	1 cut(s)	143
MlyI	GAGTC	3 cut(s)	36, 77, 191
MnlI	CCTC	8 cut(s)	14, 17, 66, 73, 109, 146, 197, 269
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	4 cut(s)	34, 107, 148, 149
MvaI	CCWGG	2 cut(s)	34, 107
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	2 cut(s)	148, 149
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	242
PleI	GAGTC	3 cut(s)	36, 77, 191
PpsI	GAGTC	3 cut(s)	36, 77, 191
Psp6I	CCWGG	2 cut(s)	32, 105
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	2 cut(s)	32, 105
PspN4I	GGNNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	143
SchI	GAGTC	3 cut(s)	36, 77, 191
ScrFI	CCNGG	4 cut(s)	34, 107, 148, 149
SetI	ASST	5 cut(s)	28, 35, 95, 231, 236
SmaI	CCCGGG	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	32, 105, 146, 147
TaqI	TCGA	5 cut(s)	7, 162, 193, 220, 283
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	255
TspMI	CCCGGG	1 cut(s)	147
XmaI	CCCGGG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.