Rh7AG447000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004885
Physical Location & Seq
Reverse (-)
60717154 .. 60734310
17157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG447000.1

Sequence Viewer

Length: 330 bp
ATGGATTCCCGGCACGCATCTCTAGGCCGCCGAACGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCGGGACTCGATCTCAGCCAGATCCCACCTATCGATAATGGAGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGTCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTGCATGGAACCTTTGGAAATGAAGTTGCTATGGTGCTTGGCGGTGGTACTGTACCAGCATTCAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

10.83

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AciI CCGC 3 cut(s) 28, 208, 300
AclI AACGTT 1 cut(s) 35
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 2 cut(s) 45, 252
AfaI GTAC 2 cut(s) 307, 312
AfiI CCNNNNNNNGG 2 cut(s) 37, 263
AgsI TTSAA 2 cut(s) 214, 322
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 103
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 45, 252
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 49
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 28, 63
BlsI GCNGC 2 cut(s) 29, 64
Bme1390I CCNGG 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 263
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 37, 263
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 115, 156
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 27
BshVI ATCGAT 1 cut(s) 120
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 37, 263
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 97, 108, 244
BspACI CCGC 3 cut(s) 28, 208, 300
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 114, 157
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 230
BssMI GATC 3 cut(s) 97, 108, 244
Bst4CI ACNGT 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 15, 60
BstDEI CTNAG 2 cut(s) 101, 165
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 100, 111, 247
BstMBI GATC 3 cut(s) 97, 108, 244
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 15, 60
CfoI GCGC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 2 cut(s) 306, 311
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 27, 62, 105
CviKI_1 RGCY 3 cut(s) 27, 62, 105
CviQI GTAC 2 cut(s) 306, 311
DdeI CTNAG 2 cut(s) 101, 165
DpnI GATC 3 cut(s) 99, 110, 246
DpnII GATC 3 cut(s) 97, 108, 244
EcoRI GAATTC 1 cut(s) 252
FaeI CATG 1 cut(s) 266
FaiI YATR 2 cut(s) 264, 290
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 28, 63
Fsp4HI GCNGC 2 cut(s) 28, 63
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 28, 63
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 5, 93, 159
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 145, 166
Hpy188III TCNNGA 2 cut(s) 90, 327
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 65, 262
HpyF3I CTNAG 2 cut(s) 101, 165
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 3 cut(s) 97, 108, 244
LpnPI CCDG 3 cut(s) 23, 119, 211
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 35
MalI GATC 3 cut(s) 99, 110, 246
MboI GATC 3 cut(s) 97, 108, 244
MboII GAAGA 2 cut(s) 53, 78
MflI RGATCY 1 cut(s) 108
MluCI AATT 3 cut(s) 45, 252, 322
MlyI GAGTC 2 cut(s) 87, 153
MmeI TCCRAC 2 cut(s) 18, 218
MnlI CCTC 3 cut(s) 122, 160, 165
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 97, 108, 244
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 2 cut(s) 29, 64
PleI GAGTC 2 cut(s) 87, 153
PpsI GAGTC 2 cut(s) 87, 153
Psp1406I AACGTT 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 108
RsaI GTAC 2 cut(s) 307, 312
RsaNI GTAC 2 cut(s) 306, 311
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 28, 63
Sau3AI GATC 3 cut(s) 97, 108, 244
SchI GAGTC 2 cut(s) 87, 153
ScrFI CCNGG 1 cut(s) 10
SetI ASST 7 cut(s) 38, 64, 118, 171, 176, 198, 272
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 45, 252, 322
SsiI CCGC 3 cut(s) 28, 208, 300
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 96, 120, 157
TasI AATT 3 cut(s) 45, 252, 322
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 263
XapI RAATTY 2 cut(s) 45, 252
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.