Rh3AG210000

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004885
Physical Location & Seq
Reverse (-)
21038368 .. 21066669
28302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG210000.1

Sequence Viewer

Length: 1272 bp
ATGGAGTCTGAGGCAAGGATTGTAATATGGGGATGCAACATAAGATTTGCAGCTAACCTCCAAGAAGACCAAACTGCTTCGAAGCAGAGGATGTCGATGGTTTTGATTGAAATTGATGAAATCTCTCTCGCAAAGGCAATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGGCTGGACTCGTGGGGCGAAGGGAAGGCAAAGTGGTGAGGAGTGAGGACTCTGTGAGCTACTTATACAGCCTGGGCAAAGAGGCCGATAACAACAACATCGCCGTAGGATCCCGGGGAGGCGTCGTCGATAATCTTTATGTAGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCGACAAAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTATTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTCCCACTCTCTCTCAATTGACAAGGATTGGGTCGCCGAACATGCTTGTCAGGTGTCAAGAATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGCGCCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATCTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTTACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGGTATGTTGCCGGTACCTCCACCCGTCCCCGTTTTTTTTCAAAGGCATTTGATACCCTGCTCCGGAAGCTACAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTGGTATGCAGGAGTAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGCAAGAATTTAAGATTTCTGTAAATGCACATTATTGGTTGCCACTATTATCATCAATTTTGTCAAGGAACAAGAAGGATAGTTTCGCTGGTGAATTCGTCGCTGCTGTTCGTCCGATACGGCTACTTGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

423

Amino Acids

47.3

Weight (kDa)

9.79

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 155 - 348 4.8e-46 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 986
AccBSI CCGCTC 1 cut(s) 787
AccIII TCCGGA 1 cut(s) 1035
AciI CCGC 5 cut(s) 406, 524, 545, 681, 785
AclWI GGATC 2 cut(s) 276, 289
AcsI RAATTY 4 cut(s) 450, 733, 1142, 1229
AcyI GRCGYC 2 cut(s) 294, 534
AfaI GTAC 2 cut(s) 959, 988
AfiI CCNNNNNNNGG 1 cut(s) 1035
AgsI TTSAA 8 cut(s) 110, 412, 730, 738, 876, 913, 941, 1014
AjnI CCWGG 2 cut(s) 170, 243
AluBI AGCT 7 cut(s) 53, 231, 475, 480, 542, 779, 1042
AluI AGCT 7 cut(s) 53, 231, 475, 480, 542, 779, 1042
Alw21I GWGCWC 1 cut(s) 544
Alw26I GTCTC 2 cut(s) 327, 805
AlwI GGATC 2 cut(s) 276, 289
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 1035
AoxI GGCC 2 cut(s) 255, 580
ApaI GGGCCC 1 cut(s) 584
ApeKI GCWGC 5 cut(s) 50, 779, 891, 1118, 1238
ApoI RAATTY 4 cut(s) 450, 733, 1142, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp718I GGTACC 1 cut(s) 986
AspLEI GCGC 1 cut(s) 784
AspS9I GGNCC 4 cut(s) 514, 580, 581, 925
AsuC2I CCSGG 2 cut(s) 286, 287
AsuHPI GGTGA 4 cut(s) 220, 379, 880, 1238
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 514, 925
BaeGI GKGCMC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 3 cut(s) 544, 567, 584
BarI GAAGNNNNNNTAC 2 cut(s) 856, 888
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 544
BbvI GCAGC 5 cut(s) 62, 766, 903, 1105, 1225
BccI CCATC 2 cut(s) 91, 840
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 172, 245
BcnI CCSGG 2 cut(s) 286, 287
BcoDI GTCTC 2 cut(s) 327, 805
BfmI CTRYAG 1 cut(s) 832
BisI GCNGC 7 cut(s) 51, 682, 780, 785, 892, 1119, 1239
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 7 cut(s) 52, 683, 781, 786, 893, 1120, 1240
Bme1390I CCNGG 4 cut(s) 172, 245, 286, 287
Bme18I GGWCC 2 cut(s) 514, 925
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 4 cut(s) 514, 580, 581, 925
BmiI GGNNCC 6 cut(s) 283, 516, 582, 583, 926, 988
BmrFI CCNGG 4 cut(s) 172, 245, 286, 287
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 2 cut(s) 23, 1076
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 286, 287
BsaBI GATNNNNATC 1 cut(s) 850
BsaHI GRCGYC 2 cut(s) 294, 534
BsaJI CCNNGG 6 cut(s) 171, 244, 285, 286, 493, 839
BsaWI WCCGGW 1 cut(s) 1035
BsaXI ACNNNNNCTCC 6 cut(s) 282, 312, 1056, 1083, 1086, 1113
Bsc4I CCNNNNNNNGG 1 cut(s) 1035
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 850
BseAI TCCGGA 1 cut(s) 1035
BseBI CCWGG 2 cut(s) 172, 245
BseDI CCNNGG 6 cut(s) 171, 244, 285, 286, 493, 839
BseGI GGATG 3 cut(s) 38, 96, 811
BseJI GATNNNNATC 1 cut(s) 850
BseLI CCNNNNNNNGG 1 cut(s) 1035
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 490, 611, 783
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 2 cut(s) 174, 226
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 5 cut(s) 62, 766, 903, 1105, 1225
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 2 cut(s) 257, 582
BshNI GGYRCC 1 cut(s) 986
BsiEI CGRYCG 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 544
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 4 cut(s) 286, 537, 984, 1036
BslFI GGGAC 3 cut(s) 500, 984, 1040
BslI CCNNNNNNNGG 1 cut(s) 1035
BsmAI GTCTC 2 cut(s) 327, 805
BsmFI GGGAC 3 cut(s) 500, 984, 1040
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 2 cut(s) 257, 582
BsoBI CYCGRG 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 80
Bsp120I GGGCCC 1 cut(s) 580
Bsp1286I GDGCHC 3 cut(s) 544, 567, 584
Bsp13I TCCGGA 1 cut(s) 1035
Bsp1407I TGTACA 1 cut(s) 957
Bsp143I GATC 2 cut(s) 281, 442
Bsp1720I GCTNAGC 1 cut(s) 476
BspACI CCGC 5 cut(s) 406, 524, 545, 681, 785
BspANI GGCC 2 cut(s) 257, 582
BspCNI CTCAG 3 cut(s) 489, 610, 784
BspEI TCCGGA 1 cut(s) 1035
BspLI GGNNCC 6 cut(s) 283, 516, 582, 583, 926, 988
BspPI GGATC 2 cut(s) 276, 289
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 986
BsrBI CCGCTC 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 983
BsrGI TGTACA 1 cut(s) 957
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 6 cut(s) 171, 244, 285, 286, 493, 839
BssMI GATC 2 cut(s) 281, 442
BssNI GRCGYC 2 cut(s) 294, 534
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 839
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 172, 245
Bst4CI ACNGT 1 cut(s) 760
BstACI GRCGYC 2 cut(s) 294, 534
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstAUI TGTACA 1 cut(s) 957
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 473, 1136
BstDEI CTNAG 5 cut(s) 9, 476, 597, 792, 896
BstF5I GGATG 3 cut(s) 38, 96, 811
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 2 cut(s) 284, 445
BstMAI GTCTC 2 cut(s) 327, 805
BstMBI GATC 2 cut(s) 281, 442
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 6 cut(s) 173, 477, 650, 779, 1039, 1073
BstNI CCWGG 2 cut(s) 172, 245
BstNSI RCATGY 2 cut(s) 653, 958
BstSCI CCNGG 4 cut(s) 170, 243, 284, 285
BstSFI CTRYAG 1 cut(s) 832
BstSLI GKGCMC 1 cut(s) 584
BstV1I GCAGC 5 cut(s) 62, 766, 903, 1105, 1225
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 846
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 2 cut(s) 257, 582
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 3 cut(s) 38, 96, 811
Cac8I GCNNGC 2 cut(s) 473, 1136
CfoI GCGC 1 cut(s) 784
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 4 cut(s) 514, 580, 581, 925
Cfr9I CCCGGG 1 cut(s) 285
CseI GACGC 2 cut(s) 283, 542
Csp6I GTAC 2 cut(s) 958, 987
CviAII CATG 3 cut(s) 650, 685, 955
CviQI GTAC 2 cut(s) 958, 987
DdeI CTNAG 5 cut(s) 9, 476, 597, 792, 896
DpnI GATC 2 cut(s) 283, 444
DpnII GATC 2 cut(s) 281, 442
EciI GGCGGA 2 cut(s) 513, 534
Ecl136II GAGCTC 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 839
Eco24I GRGCYC 3 cut(s) 544, 567, 584
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 2 cut(s) 514, 925
Eco53kI GAGCTC 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 542
EcoO109I RGGNCCY 3 cut(s) 580, 581, 925
EcoRI GAATTC 3 cut(s) 450, 733, 1229
EcoRII CCWGG 2 cut(s) 170, 243
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 839
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 3 cut(s) 544, 567, 584
ErhI CCWWGG 1 cut(s) 839
FaeI CATG 3 cut(s) 653, 688, 958
FaqI GGGAC 3 cut(s) 500, 984, 1040
FatI CATG 3 cut(s) 649, 684, 954
Fnu4HI GCNGC 7 cut(s) 51, 682, 780, 785, 892, 1119, 1239
FokI GGATG 3 cut(s) 45, 103, 818
FriOI GRGCYC 3 cut(s) 544, 567, 584
Fsp4HI GCNGC 7 cut(s) 51, 682, 780, 785, 892, 1119, 1239
GlaI GCGC 1 cut(s) 783
GluI GCNGC 7 cut(s) 51, 682, 780, 785, 892, 1119, 1239
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 2 cut(s) 257, 582
HapII CCGG 4 cut(s) 286, 537, 984, 1036
HgaI GACGC 2 cut(s) 283, 542
HhaI GCGC 1 cut(s) 784
Hin1I GRCGYC 2 cut(s) 294, 534
Hin1II CATG 3 cut(s) 653, 688, 958
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HinfI GANTC 6 cut(s) 5, 180, 221, 335, 520, 608
HpaII CCGG 4 cut(s) 286, 537, 984, 1036
HphI GGTGA 4 cut(s) 220, 379, 880, 1238
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 6 cut(s) 10, 340, 607, 793, 1106, 1251
Hpy188III TCNNGA 6 cut(s) 332, 517, 666, 730, 855, 1036
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 5 cut(s) 299, 302, 536, 563, 1238
HpyAV CCTTC 7 cut(s) 186, 191, 385, 682, 915, 947, 1204
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4V TGCA 7 cut(s) 36, 50, 725, 954, 1088, 1134, 1163
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 477, 650, 779, 1039, 1073
HpyF3I CTNAG 5 cut(s) 9, 476, 597, 792, 896
Hsp92I GRCGYC 2 cut(s) 294, 534
Hsp92II CATG 3 cut(s) 653, 688, 958
HspAI GCGC 1 cut(s) 782
Kpn2I TCCGGA 1 cut(s) 1035
KpnI GGTACC 1 cut(s) 990
Kzo9I GATC 2 cut(s) 281, 442
LmnI GCTCC 4 cut(s) 539, 547, 1038, 1064
Lsp1109I GCAGC 5 cut(s) 62, 766, 903, 1105, 1225
LweI GCATC 2 cut(s) 23, 1076
MaeIII GTNAC 2 cut(s) 868, 905
MalI GATC 2 cut(s) 283, 444
MbiI CCGCTC 1 cut(s) 787
MboI GATC 2 cut(s) 281, 442
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 544, 567, 584
MluCI AATT 8 cut(s) 111, 450, 624, 733, 859, 1142, 1191, 1229
MlyI GAGTC 5 cut(s) 14, 174, 215, 329, 514
MmeI TCCRAC 1 cut(s) 416
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 1035
MseI TTAA 2 cut(s) 396, 1146
MslI CAYNNNNRTG 1 cut(s) 689
MspI CCGG 4 cut(s) 286, 537, 984, 1036
MspR9I CCNGG 4 cut(s) 172, 245, 286, 287
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 2 cut(s) 172, 245
MwoI GCNNNNNNNGC 6 cut(s) 173, 477, 650, 779, 1039, 1073
NciI CCSGG 2 cut(s) 286, 287
NdeII GATC 2 cut(s) 281, 442
NlaIII CATG 3 cut(s) 653, 688, 958
NlaIV GGNNCC 6 cut(s) 283, 516, 582, 583, 926, 988
NmuCI GTSAC 1 cut(s) 868
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 2 cut(s) 653, 958
NspV TTCGAA 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 7 cut(s) 52, 683, 781, 786, 893, 1120, 1240
PleI GAGTC 5 cut(s) 13, 174, 215, 329, 514
PpsI GAGTC 5 cut(s) 13, 174, 215, 329, 514
PpuMI RGGWCCY 1 cut(s) 925
Psp124BI GAGCTC 1 cut(s) 544
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 2 cut(s) 170, 243
PspGI CCWGG 2 cut(s) 170, 243
PspN4I GGNNCC 6 cut(s) 283, 516, 582, 583, 926, 988
PspOMI GGGCCC 1 cut(s) 580
PspPI GGNCC 4 cut(s) 514, 580, 581, 925
PspPPI RGGWCCY 1 cut(s) 925
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 2 cut(s) 959, 988
RsaNI GTAC 2 cut(s) 958, 987
RseI CAYNNNNRTG 1 cut(s) 689
SacI GAGCTC 1 cut(s) 544
SaqAI TTAA 2 cut(s) 396, 1146
SatI GCNGC 7 cut(s) 51, 682, 780, 785, 892, 1119, 1239
Sau3AI GATC 2 cut(s) 281, 442
Sau96I GGNCC 4 cut(s) 514, 580, 581, 925
SchI GAGTC 5 cut(s) 14, 174, 215, 329, 514
ScrFI CCNGG 4 cut(s) 172, 245, 286, 287
SduI GDGCHC 3 cut(s) 544, 567, 584
SfaNI GCATC 2 cut(s) 23, 1076
SfcI CTRYAG 1 cut(s) 832
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 2 cut(s) 514, 925
SmaI CCCGGG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 689
Sse9I AATT 8 cut(s) 111, 450, 624, 733, 859, 1142, 1191, 1229
SsiI CCGC 5 cut(s) 406, 524, 545, 681, 785
SspI AATATT 1 cut(s) 880
SstI GAGCTC 1 cut(s) 544
StyD4I CCNGG 4 cut(s) 170, 243, 284, 285
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 1 cut(s) 760
TaqII GACCGA 1 cut(s) 507
TasI AATT 8 cut(s) 111, 450, 624, 733, 859, 1142, 1191, 1229
TatI WGTACW 1 cut(s) 957
TauI GCSGC 2 cut(s) 684, 787
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 2 cut(s) 396, 1146
Tru9I TTAA 2 cut(s) 396, 1146
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 5 cut(s) 50, 779, 891, 1118, 1238
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 2 cut(s) 132, 701
TspMI CCCGGG 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 514, 925
XapI RAATTY 4 cut(s) 450, 733, 1142, 1229
XceI RCATGY 2 cut(s) 653, 958
XmaI CCCGGG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.