Rh2BG194400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004885
Physical Location & Seq
Reverse (-)
17692988 .. 17693791
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG194400.1

Sequence Viewer

Length: 246 bp
ATGGATTCCCGGCACGCATCTCTAGGCCGCCGAAAGTTGGAAGAAATTCGACAAAAGCGAGCTGCAGAAAGATTGAGAAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATCGGTCTGCTGGGCAAAGAGGCCGATAACAACAACATTGCCGTAGGATCCCGGGGCGGCGGCGTCGATAATCTTTTTGTCGGCAAATCCCTCAATCGAGACTCCGATATCGTCTTTGATTATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.88

Weight (kDa)

9.69

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 28, 174, 177
AclWI GGATC 3 cut(s) 103, 159, 172
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 37, 119
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 3 cut(s) 103, 159, 172
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 2 cut(s) 25, 138
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 45
Asp700I GAANNNNTTC 2 cut(s) 45, 82
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 3 cut(s) 10, 169, 170
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 92
BamHI GGATCC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 143
BcnI CCSGG 3 cut(s) 10, 169, 170
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 2 cut(s) 63, 242
BisI GCNGC 4 cut(s) 28, 63, 175, 178
BlsI GCNGC 4 cut(s) 29, 64, 176, 179
Bme1390I CCNGG 3 cut(s) 10, 169, 170
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 93, 94, 166
BmrFI CCNGG 3 cut(s) 10, 169, 170
BmsI GCATC 1 cut(s) 26
BpuMI CCSGG 3 cut(s) 10, 169, 170
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 168, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 119
Bse3DI GCAATG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 168, 169
BseLI CCNNNNNNNGG 2 cut(s) 37, 119
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 49
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 27, 140
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 2 cut(s) 10, 169
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 37, 119
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 2 cut(s) 27, 140
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 3 cut(s) 97, 108, 164
BspACI CCGC 3 cut(s) 28, 174, 177
BspANI GGCC 2 cut(s) 27, 140
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 93, 94, 166
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 3 cut(s) 103, 159, 172
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 168, 169
BssMI GATC 3 cut(s) 97, 108, 164
BssNI GRCGYC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 15, 60
BstDEI CTNAG 1 cut(s) 101
BstKTI GATC 3 cut(s) 100, 111, 167
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 97, 108, 164
BstSCI CCNGG 3 cut(s) 8, 167, 168
BstSFI CTRYAG 2 cut(s) 63, 242
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 108, 164
BstYI RGATCY 2 cut(s) 108, 164
BsuRI GGCC 2 cut(s) 27, 140
Cac8I GCNNGC 2 cut(s) 15, 60
Cfr13I GGNCC 1 cut(s) 92
Cfr9I CCCGGG 1 cut(s) 168
CseI GACGC 1 cut(s) 169
CviJI RGCY 4 cut(s) 27, 62, 105, 140
CviKI_1 RGCY 4 cut(s) 27, 62, 105, 140
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 99, 110, 166
DpnII GATC 3 cut(s) 97, 108, 164
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 92
EcoRV GATATC 1 cut(s) 226
FaiI YATR 1 cut(s) 244
FaqI GGGAC 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 28, 63, 175, 178
Fsp4HI GCNGC 4 cut(s) 28, 63, 175, 178
FspBI CTAG 1 cut(s) 23
GluI GCNGC 4 cut(s) 28, 63, 175, 178
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 2 cut(s) 27, 140
HapII CCGG 2 cut(s) 10, 169
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 180
HinfI GANTC 2 cut(s) 5, 218
HpaII CCGG 2 cut(s) 10, 169
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 90, 215
Hpy99I CGWCG 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 180
KflI GGGWCCC 1 cut(s) 92
Kzo9I GATC 3 cut(s) 97, 108, 164
LpnPI CCDG 4 cut(s) 23, 113, 119, 182
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 23
MalI GATC 3 cut(s) 99, 110, 166
MboI GATC 3 cut(s) 97, 108, 164
MboII GAAGA 2 cut(s) 53, 78
MflI RGATCY 2 cut(s) 108, 164
MluCI AATT 1 cut(s) 45
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 2 cut(s) 130, 218
MroXI GAANNNNTTC 2 cut(s) 45, 82
MspI CCGG 2 cut(s) 10, 169
MspR9I CCNGG 3 cut(s) 10, 169, 170
NciI CCSGG 3 cut(s) 10, 169, 170
NdeII GATC 3 cut(s) 97, 108, 164
NlaIV GGNNCC 3 cut(s) 93, 94, 166
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PdmI GAANNNNTTC 2 cut(s) 45, 82
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 4 cut(s) 29, 64, 176, 179
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 93, 94, 166
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 2 cut(s) 108, 164
SatI GCNGC 4 cut(s) 28, 63, 175, 178
Sau3AI GATC 3 cut(s) 97, 108, 164
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 10, 169, 170
SetI ASST 2 cut(s) 64, 118
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 2 cut(s) 63, 242
SinI GGWCC 1 cut(s) 92
SmaI CCCGGG 1 cut(s) 170
Sse9I AATT 1 cut(s) 45
SsiI CCGC 3 cut(s) 28, 174, 177
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 8, 167, 168
TaqI TCGA 3 cut(s) 49, 183, 214
TaqII GACCGA 1 cut(s) 110
TasI AATT 1 cut(s) 45
TauI GCSGC 3 cut(s) 30, 177, 180
TfiI GAWTC 1 cut(s) 5
TseI GCWGC 1 cut(s) 62
TspMI CCCGGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 45
XmaI CCCGGG 1 cut(s) 168
XmnI GAANNNNTTC 2 cut(s) 45, 82
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.