RLG00000032185

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003969
Physical Location & Seq
Reverse (-)
11890862 .. 11893808
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032185

Sequence Viewer

Length: 546 bp
ATGACAATTGGTGGTCCATGGAATTCCACTGATAGTGGTGATCCATCAGTTGATGATAGCTCTTTAATTCAAACTGCAATAAGATATGGAAAGGATGTTGTGAAACTTGATCTGCAGAACTGCAAGAACTGGAATCGTTTTCTTAAGGCCGGTGGAAATGAGGCTGATATGATGGCTGCTAATGAGTTAAATGCTCACACATCCCTTCAAGACAGGTCAGATGGTATCTACCATAATCTTGTGACACTCATAAGTGGGTGTGAAACAACAACTGGGGAGCAGGTAACTTTTCATGGGATTTTAGATTACGATTCAGAGGCACTTGCTATAGCAGGAGCCATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTGTTGTCCTGATCTTGGCTCACTTGATGTGCGCCATTGTTTCATTCTTAATATGGAGGGAGATTTGAGAAGAATATGTGATGAACGAATTGAGAAATTGTGGCTTCCCATGATTCCACCACTACAGGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

182

Amino Acids

20.05

Weight (kDa)

4.73

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBC1 PF14443 1 - 49 3.3e-15 DBC1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 425
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 71, 209
AluBI AGCT 2 cut(s) 60, 364
AluI AGCT 2 cut(s) 60, 364
AlwI GGATC 1 cut(s) 35
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 163
BccI CCATC 4 cut(s) 52, 166, 215, 383
BfmI CTRYAG 3 cut(s) 113, 327, 533
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 134, 277
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 100, 200
BseLI CCNNNNNNNGG 1 cut(s) 425
BseNI ACTGG 2 cut(s) 134, 277
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 425
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 40, 109, 421
Bsp19I CCATGG 1 cut(s) 17
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 271
BspPI GGATC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 2 cut(s) 134, 277
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 40, 109, 421
BssT1I CCWWGG 1 cut(s) 17
BstAFI CTTAAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 100, 200
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 3 cut(s) 43, 112, 424
BstMBI GATC 3 cut(s) 40, 109, 421
BstSFI CTRYAG 3 cut(s) 113, 327, 533
BstV1I GCAGC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 368
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 100, 200
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 5 cut(s) 18, 293, 340, 344, 520
CviJI RGCY 9 cut(s) 60, 149, 164, 176, 338, 364, 393, 429, 514
CviKI_1 RGCY 9 cut(s) 60, 149, 164, 176, 338, 364, 393, 429, 514
DpnI GATC 3 cut(s) 42, 111, 423
DpnII GATC 3 cut(s) 40, 109, 421
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 17
EcoT22I ATGCAT 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 5 cut(s) 21, 296, 343, 347, 523
FatI CATG 5 cut(s) 17, 292, 339, 343, 519
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 2 cut(s) 107, 187
Fsp4HI GCNGC 1 cut(s) 177
GlaI GCGC 1 cut(s) 443
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 444
Hin1II CATG 5 cut(s) 21, 296, 343, 347, 523
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 3 cut(s) 133, 311, 523
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 350, 381
Hpy188I TCNGA 2 cut(s) 220, 316
Hpy188III TCNNGA 3 cut(s) 209, 407, 419
Hpy8I GTNNAC 2 cut(s) 350, 381
HpyAV CCTTC 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 77, 115, 123, 343
Hsp92II CATG 5 cut(s) 21, 296, 343, 347, 523
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 3 cut(s) 40, 109, 421
LmnI GCTCC 2 cut(s) 277, 335
LpnPI CCDG 9 cut(s) 115, 163, 199, 258, 266, 318, 374, 432, 521
Lsp1109I GCAGC 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 241, 283
MalI GATC 3 cut(s) 42, 111, 423
MboI GATC 3 cut(s) 40, 109, 421
MboII GAAGA 1 cut(s) 492
MfeI CAATTG 1 cut(s) 6
MluCI AATT 5 cut(s) 6, 22, 66, 498, 506
MnlI CCTC 4 cut(s) 154, 310, 368, 460
Mph1103I ATGCAT 1 cut(s) 345
MseI TTAA 4 cut(s) 65, 144, 188, 459
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 17
NdeII GATC 3 cut(s) 40, 109, 421
NlaIII CATG 5 cut(s) 21, 296, 343, 347, 523
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 345
PfeI GAWTC 3 cut(s) 133, 311, 523
PkrI GCNGC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 117
SaqAI TTAA 4 cut(s) 65, 144, 188, 459
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 40, 109, 421
Sau96I GGNCC 1 cut(s) 14
SetI ASST 5 cut(s) 62, 218, 285, 360, 366
SfcI CTRYAG 3 cut(s) 113, 327, 533
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 143, 394
SmoI CTYRAG 2 cut(s) 143, 394
Sse9I AATT 5 cut(s) 6, 22, 66, 498, 506
StyI CCWWGG 1 cut(s) 17
TasI AATT 5 cut(s) 6, 22, 66, 498, 506
TfiI GAWTC 3 cut(s) 133, 311, 523
Tru1I TTAA 4 cut(s) 65, 144, 188, 459
Tru9I TTAA 4 cut(s) 65, 144, 188, 459
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 281, 442, 507
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.