Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003969

Physical Location & Seq

Genomic Coordinates Forward (+)

7178664 .. 7179405

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTTACAACATTTGCTGCAATTACTTTGGCATGCTTGGTTCATCCAGGTTTGGGTCTACTTGTTCTCTTGCTCTCTCATGCTTTGTGCTGTCATACTGCTCTTTGCAGGTATGTCCCAAATTCGATTGCCATGTGGACTTGGACGAGATATAAATATATTTTCTGTCCATTTATTGTATTCTTATTTTATATAAGTTTTTATTATTGTTTCTTGTTGATGCATACAATTGTAAACTTCATGAGTCATTTCCTACAGTATCTGAAAAAAAAAATGATCCTAGAAGTTGTTTTATATCTTTGTAACAGTTTTTTGATAGCTTCATTTCGCAGCCATGCACGAAGACATGAATTATTTGATTATAAGAAAGACGGAAATGGTGGGCCTGACAAACTTACATTCAAACGTGATGGAGATCATGACTATCCTACTTTTGTATCCCTCTTCCAGATTATCTTGATGAGTGGGATAAGCAAGAATGCTTTAGAGGAGCTGTCGATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PGAP1

Protein Analysis

168

Amino Acids

19.55

Weight (kDa)

8.83

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458311 RchiOBHm_Chr3g0479821 RchiOBHm_Chr5g0058211 RchiOBHm_Chr7g0218771
rosa_laevigata	RLG00000002203 RLG00000002741 RLG00000010568 RLG00000030396 RLG00000032185
rosa_multiflora	Rmu_sc0020639.1_g000001 Rmu_ssc0000183.1_g000020
rosa_roxburghii	Rroxscaffold_1G00004630 Rroxscaffold_3G00275310
rosa_rugosa	Rorug02G0651800 Rorug03G0217800 Rorug03G0241500
rosa_samantha	Rh1AG036900 Rh1AG340400 Rh2AG308600 Rh2BG290700 Rh3AG229500 Rh3CG308300 Rh5CG223900 Rh5CG415900 Rh6BG135900 Rh6CG134300 Rh6DG000600 Rh6DG120600 Rh7CG365200 Rh7CG433800
rosa_wichuraiana	Rw1G020130 Rw2G005810 Rw2G007320 Rw2G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
Acc36I	ACCTGC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	320, 493
AluI	AGCT	2 cut(s)	320, 493
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	17, 330
ApoI	RAATTY	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	4, 342
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	18, 331
BlsI	GCNGC	2 cut(s)	19, 332
Bme1390I	CCNGG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	4, 342
BshFI	GGCC	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	276, 415, 498
BspANI	GGCC	1 cut(s)	385
BspHI	TCATGA	2 cut(s)	240, 418
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	271
BssMI	GATC	3 cut(s)	276, 415, 498
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	258, 308
Bst6I	CTCTTC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	279, 418, 501
BstMBI	GATC	3 cut(s)	276, 415, 498
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	4, 342
BstV2I	GAAGAC	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	262
CciI	TCATGA	2 cut(s)	240, 418
Cfr13I	GGNCC	1 cut(s)	383
CviAII	CATG	7 cut(s)	33, 80, 133, 241, 335, 347, 419
CviJI	RGCY	4 cut(s)	320, 333, 385, 493
CviKI_1	RGCY	4 cut(s)	320, 333, 385, 493
DpnI	GATC	3 cut(s)	278, 417, 500
DpnII	GATC	3 cut(s)	276, 415, 498
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	225
FaeI	CATG	7 cut(s)	36, 83, 136, 244, 338, 350, 422
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	32, 79, 132, 240, 334, 346, 418
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	18, 331
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	18, 331
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	2 cut(s)	18, 331
HaeIII	GGCC	1 cut(s)	385
Hin1II	CATG	7 cut(s)	36, 83, 136, 244, 338, 350, 422
HinfI	GANTC	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	59, 138, 235
Hpy188I	TCNGA	2 cut(s)	264, 506
Hpy188III	TCNNGA	4 cut(s)	241, 419, 448, 457
Hpy8I	GTNNAC	3 cut(s)	59, 138, 235
HpyCH4III	ACNGT	2 cut(s)	258, 308
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	20, 108, 223, 338
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	7 cut(s)	36, 83, 136, 244, 338, 350, 422
Kzo9I	GATC	3 cut(s)	276, 415, 498
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	5 cut(s)	33, 60, 94, 399, 461
Lsp1109I	GCAGC	2 cut(s)	4, 342
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	4, 302
MalI	GATC	3 cut(s)	278, 417, 500
MboI	GATC	3 cut(s)	276, 415, 498
MboII	GAAGA	2 cut(s)	354, 436
MfeI	CAATTG	1 cut(s)	228
MluCI	AATT	4 cut(s)	21, 121, 228, 350
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	452, 481
Mph1103I	ATGCAT	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	276, 415, 498
NlaIII	CATG	7 cut(s)	36, 83, 136, 244, 338, 350, 422
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PagI	TCATGA	2 cut(s)	240, 418
PctI	GAATGC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	19, 332
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	262
SatI	GCNGC	2 cut(s)	18, 331
Sau3AI	GATC	3 cut(s)	276, 415, 498
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	5 cut(s)	52, 113, 322, 409, 495
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	4 cut(s)	21, 121, 228, 350
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	258, 308
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	125, 497
TasI	AATT	4 cut(s)	21, 121, 228, 350
TseI	GCWGC	2 cut(s)	17, 330
TspDTI	ATGAA	4 cut(s)	32, 229, 312, 363
TspGWI	ACGGA	1 cut(s)	387
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.