Rroxscaffold_1G00004630

Cell division cycle and apoptosis regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003969
Physical Location & Seq
Reverse (-)
6374929 .. 6380293
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004630.1

Sequence Viewer

Length: 411 bp
ATGGATAAACGATATCCCGTGCTCTTTTTACCCTCGAATTCTGCAAGGCTGTGGCCAAGGGAGAATCTTCAACTTAATTTCTATCCGGACTCTGTCGGTATCATGATTCTGAATGTTTTAGATATAATTATACACATAAAAATGCGTGTAATCACAGCTGTAATGAAAGAGCCAACGACTAAAATATTGGCTGAAGAACCTGCAATATCAAGTGGTGGGAATATTGTGTGGAATGTGAAGGATCCCGACATTGTCTATTTTCTTTCTGTTAATACAGAGAATCATGACTATCCTACTTTTCTATCCCTCTTCCGGATTATCTTGATGAGTGGGATAAGCAAGAATGCTTTAGAGGAGCTGTCATCCGAAAGAAGTTCGATATCGCATACCCCATATATGCAATATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBC1

Protein Analysis

136

Amino Acids

15.61

Weight (kDa)

6.05

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccIII TCCGGA 2 cut(s) 85, 312
AclWI GGATC 2 cut(s) 236, 249
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 2 cut(s) 158, 358
AluI AGCT 2 cut(s) 158, 358
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 2 cut(s) 236, 249
Aor13HI TCCGGA 2 cut(s) 85, 312
AoxI GGCC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 37
BalI TGGCCA 1 cut(s) 55
BamHI GGATCC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 2 cut(s) 85, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 312
BseAI TCCGGA 2 cut(s) 85, 312
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 368
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 86, 313
BslI CCNNNNNNNGG 1 cut(s) 312
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 2 cut(s) 85, 312
Bsp143I GATC 1 cut(s) 241
BspANI GGCC 1 cut(s) 55
BspEI TCCGGA 2 cut(s) 85, 312
BspHI TCATGA 2 cut(s) 102, 283
BspLI GGNNCC 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 2 cut(s) 236, 249
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 314
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 208
CciI TCATGA 2 cut(s) 102, 283
CviAII CATG 2 cut(s) 103, 284
CviJI RGCY 6 cut(s) 49, 55, 158, 172, 191, 358
CviKI_1 RGCY 6 cut(s) 49, 55, 158, 172, 191, 358
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 56
Eco32I GATATC 2 cut(s) 14, 381
Eco57I CTGAAG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 37
EcoRV GATATC 2 cut(s) 14, 381
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 106, 287
FaiI YATR 9 cut(s) 104, 125, 131, 137, 285, 387, 394, 396, 398
FatI CATG 2 cut(s) 102, 283
FokI GGATG 1 cut(s) 349
HaeIII GGCC 1 cut(s) 55
HapII CCGG 2 cut(s) 86, 313
Hin1II CATG 2 cut(s) 106, 287
HinfI GANTC 4 cut(s) 64, 89, 106, 280
HpaII CCGG 2 cut(s) 86, 313
Hpy188I TCNGA 2 cut(s) 111, 367
Hpy188III TCNNGA 6 cut(s) 86, 103, 245, 284, 313, 322
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 44, 203, 400
Hsp92II CATG 2 cut(s) 106, 287
Kpn2I TCCGGA 2 cut(s) 85, 312
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 3 cut(s) 99, 213, 326
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 3 cut(s) 59, 206, 301
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 3 cut(s) 37, 76, 126
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 43, 317, 346
Mox20I TGGCCA 1 cut(s) 55
MroI TCCGGA 2 cut(s) 85, 312
MscI TGGCCA 1 cut(s) 55
MseI TTAA 2 cut(s) 75, 270
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 55
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 86, 313
Mva1269I GAATGC 1 cut(s) 349
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 106, 287
NlaIV GGNNCC 1 cut(s) 243
PagI TCATGA 2 cut(s) 102, 283
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 64, 106, 280
PflFI GACNNNGTC 2 cut(s) 92, 251
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 241
PsyI GACNNNGTC 2 cut(s) 92, 251
PvuII CAGCTG 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 75, 270
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 24
SetI ASST 3 cut(s) 160, 202, 360
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 3 cut(s) 37, 76, 126
SspI AATATT 2 cut(s) 186, 223
StyI CCWWGG 1 cut(s) 56
TaqI TCGA 2 cut(s) 35, 377
TasI AATT 3 cut(s) 37, 76, 126
TfiI GAWTC 3 cut(s) 64, 106, 280
Tru1I TTAA 2 cut(s) 75, 270
Tru9I TTAA 2 cut(s) 75, 270
TspDTI ATGAA 1 cut(s) 179
Tth111I GACNNNGTC 2 cut(s) 92, 251
XapI RAATTY 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.