Rh1AG036900

Cell division cycle and apoptosis regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003969
Physical Location & Seq
Reverse (-)
6472531 .. 6484526
11996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG036900.1

Sequence Viewer

Length: 420 bp
ATGACAATTAGTGGTCCATGGAATTCCACTGATGGCGGTGATCCATCAGTTGATGATAGCTCTTTAATTCAAACTGCAATAAGATATGGAAAGGATGTTGTGAAACATGATCTGCAGAACTGCAAGAACTGGAATCGTTTTCTTAAGTCTACTGCTTTAAGCATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGGCTAGTGGGACTAGCTTCAATCATTCGCTTACCAGTGACTACCACATCAAGCTAGGACCTGAAAAAATGCTGCCACTGGTTCTGTGGATCTTTCCAAGTTTATTAGTCTTTGATGAAGATGTTGCTAAGCTCGACTTACTGAATGAGCTAGGGGAAATACAAAGATTAGCCTTTTCTACTTTCCAGAGGATGGACCAGGAGATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBC1

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

5.07

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBC1 PF14443 1 - 49 2.4e-14 DBC1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 397
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 36
AclWI GGATC 2 cut(s) 35, 302
AcsI RAATTY 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 397
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 71, 203, 226
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 5 cut(s) 60, 222, 259, 337, 355
AluI AGCT 5 cut(s) 60, 222, 259, 337, 355
AlwI GGATC 2 cut(s) 35, 302
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 3 cut(s) 14, 263, 400
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 3 cut(s) 14, 263, 400
BbvI GCAGC 1 cut(s) 264
BccI CCATC 3 cut(s) 26, 52, 391
BciT130I CCWGG 1 cut(s) 404
BfaI CTAG 4 cut(s) 210, 219, 260, 356
BfmI CTRYAG 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 278
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 3 cut(s) 14, 263, 400
BmgT120I GGNCC 3 cut(s) 14, 263, 400
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 3 cut(s) 134, 240, 288
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 100, 402
BseLI CCNNNNNNNGG 1 cut(s) 397
BseNI ACTGG 3 cut(s) 134, 240, 288
BseXI GCAGC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 229
Bsp143I GATC 3 cut(s) 40, 109, 294
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 2 cut(s) 35, 302
BspTI CTTAAG 1 cut(s) 143
BsrI ACTGG 3 cut(s) 134, 240, 288
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 40, 109, 294
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 404
BstAFI CTTAAG 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 100, 402
BstKTI GATC 3 cut(s) 43, 112, 297
BstMBI GATC 3 cut(s) 40, 109, 294
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 100, 402
BtsIMutI CAGTG 3 cut(s) 27, 247, 281
Cfr13I GGNCC 3 cut(s) 14, 263, 400
CviAII CATG 4 cut(s) 18, 107, 163, 176
CviJI RGCY 7 cut(s) 60, 209, 222, 259, 337, 355, 377
CviKI_1 RGCY 7 cut(s) 60, 209, 222, 259, 337, 355, 377
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 42, 111, 296
DpnII GATC 3 cut(s) 40, 109, 294
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 3 cut(s) 14, 263, 400
EcoO109I RGGNCCY 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 4 cut(s) 21, 110, 166, 179
FaiI YATR 8 cut(s) 19, 87, 108, 164, 177, 183, 188, 418
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 229
FatI CATG 4 cut(s) 17, 106, 162, 175
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 2 cut(s) 107, 409
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 4 cut(s) 210, 219, 260, 356
GluI GCNGC 1 cut(s) 278
Hin1II CATG 4 cut(s) 21, 110, 166, 179
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 77, 115, 123
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 4 cut(s) 21, 110, 166, 179
Kzo9I GATC 3 cut(s) 40, 109, 294
LpnPI CCDG 7 cut(s) 115, 253, 269, 279, 389, 404, 416
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 1 cut(s) 399
MaeI CTAG 4 cut(s) 210, 219, 260, 356
MaeIII GTNAC 1 cut(s) 242
MalI GATC 3 cut(s) 42, 111, 296
MboI GATC 3 cut(s) 40, 109, 294
MboII GAAGA 1 cut(s) 335
MflI RGATCY 1 cut(s) 294
MluCI AATT 3 cut(s) 6, 22, 66
MnlI CCTC 1 cut(s) 387
MseI TTAA 4 cut(s) 65, 144, 158, 195
MslI CAYNNNNRTG 1 cut(s) 180
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 17
NdeII GATC 3 cut(s) 40, 109, 294
NlaIII CATG 4 cut(s) 21, 110, 166, 179
NmuCI GTSAC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 1 cut(s) 279
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspPI GGNCC 3 cut(s) 14, 263, 400
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 4 cut(s) 65, 144, 158, 195
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 3 cut(s) 40, 109, 294
Sau96I GGNCC 3 cut(s) 14, 263, 400
ScrFI CCNGG 1 cut(s) 404
SetI ASST 6 cut(s) 62, 224, 261, 268, 339, 357
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 3 cut(s) 14, 263, 400
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 6, 22, 66
SsiI CCGC 1 cut(s) 36
SspMI CTAG 4 cut(s) 210, 219, 260, 356
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 339
TasI AATT 3 cut(s) 6, 22, 66
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 4 cut(s) 65, 144, 158, 195
Tru9I TTAA 4 cut(s) 65, 144, 158, 195
TscAI CASTG 3 cut(s) 34, 247, 288
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 3 cut(s) 34, 247, 288
Van91I CCANNNNNTGG 1 cut(s) 397
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 3 cut(s) 14, 263, 400
XapI RAATTY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 4 cut(s) 210, 219, 260, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.