Rh3AG229500

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003969
Physical Location & Seq
Forward (+)
23652240 .. 23657654
5415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG229500.1

Sequence Viewer

Length: 471 bp
ATGACGGTGACGAGGAGTAGCGATGTGAGCTCGTGTGAGCATCGGAAAGGCAGGTTCGCCTTTTATGGGGCTGCTCTGCTACATATTTTCATCAAGAAAAGGTTTCAATTTGGGGGAAAAACTTCTCAATGGTTTGTGAATATAGCCTCTGTTTTCTGTTCATGGAAGGTGGTAAGGGTTGTAAGAGCTAATCCACTAATGCTTACAGCACTTGCTGCAATTACTTTGGCATGCTTGGTTCATCCAGGTTTGGGTCTACTTGTTCTCTTGCTCTCTCATGCTTTGTGCTGTCATACTGCTCTTTGCAGAATAATGGAGTGCGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGGTCGTGCGACCCAGTTTCCAAGTAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATTGATGATCTTGAACGAGTTCTTTCTTCAAATTTGGCACAGGAAGGTGGAAGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PGAP1

Protein Analysis

156

Amino Acids

17.5

Weight (kDa)

9.59

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 66, 251
AgsI TTSAA 4 cut(s) 107, 404, 425, 441
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 4 cut(s) 30, 188, 331, 383
AluI AGCT 4 cut(s) 30, 188, 331, 383
Alw21I GWGCWC 1 cut(s) 32
ApeKI GCWGC 4 cut(s) 71, 215, 328, 383
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
Asp700I GAANNNNTTC 2 cut(s) 121, 429
AsuHPI GGTGA 1 cut(s) 19
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 2 cut(s) 31, 387
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 58, 202, 340, 370
BciT130I CCWGG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 4 cut(s) 72, 216, 329, 384
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 4 cut(s) 73, 217, 330, 385
Bme1390I CCNGG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 332
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 251
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 66, 251
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 58, 202, 340, 370
BsiHKAI GWGCWC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 66, 251
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 1 cut(s) 332
BspMI ACCTGC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 367
BssMI GATC 1 cut(s) 418
BssSI CACGAG 2 cut(s) 31, 387
Bst2BI CACGAG 2 cut(s) 31, 387
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 7
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 421
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 2 cut(s) 27, 215
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 4 cut(s) 58, 202, 340, 370
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 232
CviAII CATG 3 cut(s) 162, 231, 278
CviJI RGCY 7 cut(s) 30, 71, 146, 188, 331, 383, 400
CviKI_1 RGCY 7 cut(s) 30, 71, 146, 188, 331, 383, 400
DdeI CTNAG 1 cut(s) 332
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 3 cut(s) 165, 234, 281
FaiI YATR 8 cut(s) 66, 84, 143, 163, 232, 279, 294, 338
FatI CATG 3 cut(s) 161, 230, 277
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 72, 216, 329, 384
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 72, 216, 329, 384
GluI GCNGC 4 cut(s) 72, 216, 329, 384
Hin1II CATG 3 cut(s) 165, 234, 281
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 94, 389, 422
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 160, 449, 456
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 218, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 215
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 3 cut(s) 165, 234, 281
Kzo9I GATC 1 cut(s) 418
LpnPI CCDG 5 cut(s) 37, 231, 258, 380, 437
Lsp1109I GCAGC 4 cut(s) 58, 202, 340, 370
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 7, 389
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 4 cut(s) 107, 219, 411, 442
MnlI CCTC 2 cut(s) 6, 157
MroXI GAANNNNTTC 2 cut(s) 121, 429
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 27, 215
NdeII GATC 1 cut(s) 418
NlaIII CATG 3 cut(s) 165, 234, 281
NmuCI GTSAC 2 cut(s) 7, 389
NspI RCATGY 1 cut(s) 234
PaeI GCATGC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 121, 429
PkrI GCNGC 4 cut(s) 73, 217, 330, 385
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
SacI GAGCTC 1 cut(s) 32
SatI GCNGC 4 cut(s) 72, 216, 329, 384
Sau3AI GATC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 1 cut(s) 49
SphI GCATGC 1 cut(s) 234
Sse9I AATT 4 cut(s) 107, 219, 411, 442
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 7
TasI AATT 4 cut(s) 107, 219, 411, 442
TseFI GTSAC 2 cut(s) 7, 389
TseI GCWGC 4 cut(s) 71, 215, 328, 383
Tsp45I GTSAC 2 cut(s) 7, 389
TspDTI ATGAA 3 cut(s) 79, 150, 230
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 2 cut(s) 121, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.