Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003969

Physical Location & Seq

Genomic Coordinates Forward (+)

56450630 .. 56453994

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTTTATGGGGCTGCTCTGCTACATATTTTCATCAAGAAAAGGTGGTAAGGGTTGTAAGAGCTAATCCACTAATGCTTACAGCACTTGCTGCAATTACTTTGGCATGCTTGGTTCATCCAGGTTTGGGTCTACTTGTTCTCTTGCTCTCTCATGCTTTGTGCTGTCATACTGCTCTTTGCAGAATAATGGAGCGCGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGAGGGCATGGCCAACCATTTCAGATCCATTACACTCAACCATAGGTTGGAACGATTAAAGAGAGCCCAATCTGAGAAATCATCACTTCTGGAAAAAGCTGAGGAACTTGCAGATCAATTGGCAGCTTCTAGCTTCAACACGTCCACGTGCTTAGAGAAGGCAAGGAAGGGAAAACTGGCAACTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATTTCCATACACATTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PGAP1

Protein Analysis

181

Amino Acids

20.22

Weight (kDa)

8.55

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458311 RchiOBHm_Chr3g0479821 RchiOBHm_Chr5g0058211 RchiOBHm_Chr7g0218771
rosa_laevigata	RLG00000002203 RLG00000002741 RLG00000010568 RLG00000030396 RLG00000032185
rosa_multiflora	Rmu_sc0020639.1_g000001 Rmu_ssc0000183.1_g000020
rosa_roxburghii	Rroxscaffold_1G00004630 Rroxscaffold_3G00275310
rosa_rugosa	Rorug02G0651800 Rorug03G0217800 Rorug03G0241500
rosa_samantha	Rh1AG036900 Rh1AG340400 Rh2AG308600 Rh2BG290700 Rh3AG229500 Rh3CG308300 Rh5CG223900 Rh5CG415900 Rh6BG135900 Rh6CG134300 Rh6DG000600 Rh6DG120600 Rh7CG365200 Rh7CG433800
rosa_wichuraiana	Rw1G020130 Rw2G005810 Rw2G007320 Rw2G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	1 cut(s)	231
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	524
AcvI	CACGTG	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	32, 161, 310
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	400
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	8 cut(s)	23, 98, 241, 362, 389, 396, 468, 484
AluI	AGCT	8 cut(s)	23, 98, 241, 362, 389, 396, 468, 484
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	48, 125, 238, 386
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	331
BbrPI	CACGTG	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	35, 112, 250, 398
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	4 cut(s)	49, 126, 239, 387
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	4 cut(s)	50, 127, 240, 388
Bme1390I	CCNGG	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 161, 310
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	3 cut(s)	32, 161, 310
BseMII	CTCAG	2 cut(s)	327, 354
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	35, 112, 250, 398
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	32, 161, 310
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	287, 376
Bsp1720I	GCTNAGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	328, 355
BspFNI	CGCG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	444
BssMI	GATC	2 cut(s)	287, 376
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	4 cut(s)	242, 336, 363, 415
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	290, 379
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	287, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 235
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	4 cut(s)	35, 112, 250, 398
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	231
CviAII	CATG	3 cut(s)	141, 188, 271
DdeI	CTNAG	4 cut(s)	242, 336, 363, 415
DpnI	GATC	2 cut(s)	289, 378
DpnII	GATC	2 cut(s)	287, 376
EaeI	YGGCCR	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	331
Eco72I	CACGTG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	3 cut(s)	144, 191, 274
FatI	CATG	3 cut(s)	140, 187, 270
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	49, 126, 239, 387
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	4 cut(s)	49, 126, 239, 387
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	4 cut(s)	49, 126, 239, 387
HaeIII	GGCC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	144, 191, 274
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	2 cut(s)	167, 408
Hpy188I	TCNGA	3 cut(s)	12, 287, 337
Hpy188III	TCNNGA	2 cut(s)	71, 353
Hpy8I	GTNNAC	2 cut(s)	167, 408
HpyAV	CCTTC	2 cut(s)	415, 424
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	404, 410
HpyCH4V	TGCA	4 cut(s)	128, 216, 374, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 235
HpyF3I	CTNAG	4 cut(s)	242, 336, 363, 415
HpySE526I	ACGT	2 cut(s)	404, 410
Hsp92II	CATG	3 cut(s)	144, 191, 274
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	287, 376
LmnI	GCTCC	2 cut(s)	28, 226
LpnPI	CCDG	4 cut(s)	141, 168, 338, 425
Lsp1109I	GCAGC	4 cut(s)	35, 112, 250, 398
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	404, 410
MalI	GATC	2 cut(s)	289, 378
MboI	GATC	2 cut(s)	287, 376
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	129, 380, 495, 524
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	2 cut(s)	259, 358
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	125, 235
NdeII	GATC	2 cut(s)	287, 376
NlaIII	CATG	3 cut(s)	144, 191, 274
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	50, 127, 240, 388
PmaCI	CACGTG	1 cut(s)	411
PmlI	CACGTG	1 cut(s)	411
Ppu21I	YACGTR	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	154
PspCI	CACGTG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	4 cut(s)	49, 126, 239, 387
Sau3AI	GATC	2 cut(s)	287, 376
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	4 cut(s)	129, 380, 495, 524
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	2 cut(s)	407, 413
TasI	AATT	4 cut(s)	129, 380, 495, 524
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	4 cut(s)	48, 125, 238, 386
TspDTI	ATGAA	2 cut(s)	56, 140
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.