Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0003969

Physical Location & Seq

Genomic Coordinates Forward (+)

97659 .. 99656

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000183.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgagtctgaagtacattacacagttcgatttgagcggcgacgattgggggacgcctttgaagttcactgtcagtagagccattctgattttgatatcccagttcgccttttatgggcctgctctgctacatattttcatcaagaaaaggtttcaattggggggaaaaacttctcaatggtttgtgaatatagcctctgttttctgttcatggaaggtggtaagtgttgtaagagctaatccactaatggttacagcacttgttgcaattactttaacatgcttggttcatccaggtttgggtctacttgttctcttgctctctcatgctttgtgctgtcatactgctctttgcagttttttgacagcttcatttcgcagccatacacgaagacatgaattatttgattataagaaagacggaaatggtgggcctgacaaacttacattcaaacgtgatggagatcatgactatcctacttttgtatccctcttccagattatcttgatgagtgagataagcaagaatgctttagaggagctgtcgatcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PGAP1

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

9.02

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458311 RchiOBHm_Chr3g0479821 RchiOBHm_Chr5g0058211 RchiOBHm_Chr7g0218771
rosa_laevigata	RLG00000002203 RLG00000002741 RLG00000010568 RLG00000030396 RLG00000032185
rosa_multiflora	Rmu_sc0020639.1_g000001 Rmu_ssc0000183.1_g000020
rosa_roxburghii	Rroxscaffold_1G00004630 Rroxscaffold_3G00275310
rosa_rugosa	Rorug02G0651800 Rorug03G0217800 Rorug03G0241500
rosa_samantha	Rh1AG036900 Rh1AG340400 Rh2AG308600 Rh2BG290700 Rh3AG229500 Rh3CG308300 Rh5CG223900 Rh5CG415900 Rh6BG135900 Rh6CG134300 Rh6DG000600 Rh6DG120600 Rh7CG365200 Rh7CG433800
rosa_wichuraiana	Rw1G020130 Rw2G005810 Rw2G007320 Rw2G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	114, 299
AgsI	TTSAA	3 cut(s)	61, 155, 451
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	236, 368, 541
AluI	AGCT	3 cut(s)	236, 368, 541
AoxI	GGCC	2 cut(s)	116, 431
ApeKI	GCWGC	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	116, 431
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BbsI	GAAGAC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	37, 379
BlsI	GCNGC	2 cut(s)	38, 380
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	116, 431
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 299
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	114, 299
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	2 cut(s)	118, 433
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	114, 299
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	118, 433
Bsp143I	GATC	2 cut(s)	463, 546
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	118, 433
BspHI	TCATGA	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	463, 546
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	24, 70
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	466, 549
BstMBI	GATC	2 cut(s)	463, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 263
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	118, 433
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	116, 431
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	5 cut(s)	210, 279, 326, 395, 467
CviJI	RGCY	8 cut(s)	80, 118, 194, 236, 368, 381, 433, 541
CviKI_1	RGCY	8 cut(s)	80, 118, 194, 236, 368, 381, 433, 541
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	2 cut(s)	465, 548
DpnII	GATC	2 cut(s)	463, 546
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	96
FaeI	CATG	5 cut(s)	213, 282, 329, 398, 470
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	5 cut(s)	209, 278, 325, 394, 466
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	37, 379
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	37, 379
GluI	GCNGC	2 cut(s)	37, 379
HaeIII	GGCC	2 cut(s)	118, 433
HgaI	GACGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	213, 282, 329, 398, 470
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	66, 305
Hpy188I	TCNGA	3 cut(s)	9, 87, 554
Hpy188III	TCNNGA	4 cut(s)	142, 467, 496, 505
Hpy8I	GTNNAC	2 cut(s)	66, 305
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	24, 70
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	2 cut(s)	266, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 263
HpySE526I	ACGT	1 cut(s)	454
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	213, 282, 329, 398, 470
Kzo9I	GATC	2 cut(s)	463, 546
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	6 cut(s)	113, 132, 279, 306, 447, 509
Lsp1109I	GCAGC	1 cut(s)	390
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	465, 548
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	2 cut(s)	463, 546
MboII	GAAGA	2 cut(s)	402, 484
MfeI	CAATTG	1 cut(s)	155
MluCI	AATT	3 cut(s)	155, 267, 398
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	205, 500, 529
MroXI	GAANNNNTTC	1 cut(s)	169
MseI	TTAA	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	124, 263
NdeII	GATC	2 cut(s)	463, 546
NlaIII	CATG	5 cut(s)	213, 282, 329, 398, 470
NspI	RCATGY	1 cut(s)	282
PagI	TCATGA	1 cut(s)	466
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	38, 380
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	116, 431
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	37, 379
Sau3AI	GATC	2 cut(s)	463, 546
Sau96I	GGNCC	2 cut(s)	116, 431
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	7 cut(s)	152, 219, 238, 298, 370, 457, 543
Sse9I	AATT	3 cut(s)	155, 267, 398
SsiI	CCGC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	24, 70
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	2 cut(s)	27, 545
TasI	AATT	3 cut(s)	155, 267, 398
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	5 cut(s)	127, 198, 278, 360, 411
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	73
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.