Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003969

Physical Location & Seq

Genomic Coordinates Reverse (-)

45441472 .. 45449679

Gene Structure 8208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGGATTGCTGCTGCTGGGTTTAACTTGGATCTGCCTTCGTCCTTGGCAGTGAAAAGAATGCCAAGGACGTTTTGGTTTAAAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCAACAGGTCGCCGAAAATCTCGACACCTAAAGAAGAGGTCAAGCGTCTGCCGGGTGGGAAGGTCAAGAAAAAGGAGAAGCTGGAGGTTATTATTGAAAAGGGGCCAACCGAGAAGGACCAAATTGATGTTCAAGGGGATATATTTTATGACATTGTGGAGTTCATTACCGACACCTGGCCTGATGGGCTCCAGTTGTTTTTAAGAATTTTAAACCATGAAGGTTTATCCTGCACAAAGGCCGGTGGAAATGAGGCTGATATGATGGCTGCTAATGAGTTAAATGCTCACACATCCCTTCAAGACAGCTCAGATGGTATCTACCAGAATCTTGTGACACTAATAAGTGGGTTTGAAACAACAACTGGGGAGCAGTTAGGTAACTTCAAATATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

173

Amino Acids

19.2

Weight (kDa)

5.75

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458311 RchiOBHm_Chr3g0479821 RchiOBHm_Chr5g0058211 RchiOBHm_Chr7g0218771
rosa_laevigata	RLG00000002203 RLG00000002741 RLG00000010568 RLG00000030396 RLG00000032185
rosa_multiflora	Rmu_sc0020639.1_g000001 Rmu_ssc0000183.1_g000020
rosa_roxburghii	Rroxscaffold_1G00004630 Rroxscaffold_3G00275310
rosa_rugosa	Rorug02G0651800 Rorug03G0217800 Rorug03G0241500
rosa_samantha	Rh1AG036900 Rh1AG340400 Rh2AG308600 Rh2BG290700 Rh3AG229500 Rh3CG308300 Rh5CG223900 Rh5CG415900 Rh6BG135900 Rh6CG134300 Rh6DG000600 Rh6DG120600 Rh7CG365200 Rh7CG433800
rosa_wichuraiana	Rw1G020130 Rw2G005810 Rw2G007320 Rw2G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	5 cut(s)	221, 257, 425, 479, 511
AjnI	CCWGG	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	120, 205, 432
AluI	AGCT	3 cut(s)	120, 205, 432
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	227, 302, 363
ApeKI	GCWGC	4 cut(s)	11, 14, 97, 392
ApoI	RAATTY	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	227, 241
AsuC2I	CCSGG	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	84, 379
BccI	CCATC	3 cut(s)	302, 382, 431
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	310
BisI	GCNGC	4 cut(s)	12, 15, 98, 393
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	4 cut(s)	13, 16, 99, 394
Bme1390I	CCNGG	2 cut(s)	177, 301
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	227, 241
BmiI	GGNNCC	2 cut(s)	228, 314
BmrFI	CCNGG	2 cut(s)	177, 301
BmrI	ACTGGG	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	2 cut(s)	227, 299
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	45, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	3 cut(s)	101, 316, 493
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	45, 65
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	3 cut(s)	101, 316, 493
BseXI	GCAGC	2 cut(s)	84, 379
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	340
BshFI	GGCC	3 cut(s)	229, 304, 365
BsiSI	CCGG	2 cut(s)	176, 366
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	229, 304, 365
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	229, 304, 365
BspCNI	CTCAG	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	228, 314
BspPI	GGATC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	101, 316, 493
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	45, 65
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	45, 65
Bst2UI	CCWGG	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	116, 433
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	175, 299
BstV1I	GCAGC	2 cut(s)	84, 379
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	229, 304, 365
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 108
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	227, 241
CseI	GACGC	1 cut(s)	158
CviAII	CATG	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	116, 433
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	2 cut(s)	82, 336
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	45, 65
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	299
EcoT14I	CCWWGG	2 cut(s)	45, 65
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	45, 65
FaeI	CATG	1 cut(s)	344
FaiI	YATR	5 cut(s)	266, 273, 342, 386, 516
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	12, 15, 98, 393
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	4 cut(s)	12, 15, 98, 393
GluI	GCNGC	4 cut(s)	12, 15, 98, 393
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	227, 299
HaeIII	GGCC	3 cut(s)	229, 304, 365
HapII	CCGG	2 cut(s)	176, 366
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	344
HinfI	GANTC	2 cut(s)	107, 451
HpaII	CCGG	2 cut(s)	176, 366
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	3 cut(s)	145, 190, 425
HpyAV	CCTTC	5 cut(s)	48, 178, 232, 338, 431
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	116, 433
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	318, 493
Lsp1109I	GCAGC	2 cut(s)	84, 379
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	85, 457, 503
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	246, 330
MnlI	CCTC	3 cut(s)	154, 202, 370
MseI	TTAA	5 cut(s)	24, 81, 326, 335, 404
MspI	CCGG	2 cut(s)	176, 366
MspR9I	CCNGG	2 cut(s)	177, 301
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	228, 314
NmuCI	GTSAC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	107, 451
PkrI	GCNGC	4 cut(s)	13, 16, 99, 394
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	228, 314
PspPI	GGNCC	2 cut(s)	227, 241
PsuI	RGATCY	1 cut(s)	31
SaqAI	TTAA	5 cut(s)	24, 81, 326, 335, 404
SatI	GCNGC	4 cut(s)	12, 15, 98, 393
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	227, 241
ScrFI	CCNGG	2 cut(s)	177, 301
SduI	GDGCHC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	246, 330
StyD4I	CCNGG	2 cut(s)	175, 299
StyI	CCWWGG	2 cut(s)	45, 65
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	246, 330
TfiI	GAWTC	2 cut(s)	107, 451
Tru1I	TTAA	5 cut(s)	24, 81, 326, 335, 404
Tru9I	TTAA	5 cut(s)	24, 81, 326, 335, 404
TscAI	CASTG	2 cut(s)	57, 108
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	4 cut(s)	11, 14, 97, 392
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	277, 357
TspRI	CASTG	2 cut(s)	57, 108
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.