Rh3CG308300

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003969
Physical Location & Seq
Reverse (-)
32250548 .. 32252762
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG308300.1

Sequence Viewer

Length: 393 bp
ATGGAAGTTTTGGGTATAGAAGTTTGGGTAAATACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTTTATGGGGCTGCTCTGCTACATATTTTCATCAAGAAAAGGTGGTAAGGGTTGTAAGAGCTAATCCACTAATGCTTACAGCACTTGCTGCAATTACTTTGGCATGCTTGGTTCATCCAGGTTTGGGTCTACTTGTTCTCTTGCTCTCTCATGCTTTGTGCTGTCATACTGCTCTTTGCAGAATAATGGAGCGCGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGAGGGCATGGCCAACCATTTCAGATCCAGTGCTATATATTGGCAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PGAP1

Protein Analysis

130

Amino Acids

14.48

Weight (kDa)

8.35

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 244
AccII CGCG 1 cut(s) 309
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 351
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 110, 239
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 3 cut(s) 101, 176, 319
AluI AGCT 3 cut(s) 101, 176, 319
AlwI GGATC 1 cut(s) 360
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 126, 203, 316
AspLEI GCGC 1 cut(s) 309
BalI TGGCCA 1 cut(s) 353
BbvI GCAGC 3 cut(s) 113, 190, 328
BciT130I CCWGG 1 cut(s) 234
BisI GCNGC 3 cut(s) 127, 204, 317
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 3 cut(s) 128, 205, 318
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 239
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 110, 239
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 113, 190, 328
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 110, 239
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 1 cut(s) 365
Bsp1720I GCTNAGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 353
BspFNI CGCG 1 cut(s) 309
BspPI GGATC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 369
BssMI GATC 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 1 cut(s) 368
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 2 cut(s) 203, 313
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 113, 190, 328
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 219, 266, 349
CviJI RGCY 5 cut(s) 101, 126, 176, 319, 353
CviKI_1 RGCY 5 cut(s) 101, 126, 176, 319, 353
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 320
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 222, 269, 352
FatI CATG 3 cut(s) 218, 265, 348
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 127, 204, 317
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 127, 204, 317
GlaI GCGC 1 cut(s) 308
GluI GCNGC 3 cut(s) 127, 204, 317
HaeIII GGCC 1 cut(s) 353
HhaI GCGC 1 cut(s) 309
Hin1II CATG 3 cut(s) 222, 269, 352
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 90, 365
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 206, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 313
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 3 cut(s) 222, 269, 352
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 3 cut(s) 58, 106, 304
LpnPI CCDG 4 cut(s) 219, 246, 371, 382
Lsp1109I GCAGC 3 cut(s) 113, 190, 328
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MflI RGATCY 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 2 cut(s) 67, 207
MluNI TGGCCA 1 cut(s) 353
MnlI CCTC 2 cut(s) 84, 337
Mox20I TGGCCA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 203, 313
NdeII GATC 1 cut(s) 365
NlaIII CATG 3 cut(s) 222, 269, 352
NspI RCATGY 1 cut(s) 222
PaeI GCATGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 128, 205, 318
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SatI GCNGC 3 cut(s) 127, 204, 317
Sau3AI GATC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 103, 159, 178, 238, 321
SphI GCATGC 1 cut(s) 222
Sse9I AATT 2 cut(s) 67, 207
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 63
TasI AATT 2 cut(s) 67, 207
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 376
TseI GCWGC 3 cut(s) 126, 203, 316
TspDTI ATGAA 3 cut(s) 33, 134, 218
TspRI CASTG 1 cut(s) 376
XceI RCATGY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.