Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003969

Physical Location & Seq

Genomic Coordinates Reverse (-)

21558040 .. 21571942

Gene Structure 13903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGTGGCTGGAAGTGGTGGAAGAGTCACCTTGGGAACAGAGCTTGGAATTGTTGGCAAGTGACTTTAATTACTGGATTATTCTTCGAGTAACTTTTGTCTTTGGAGATCTTTGTTTTCCAATATTGACCCTTTTTCTGGCTCTTGTGCTTCTTCTTCGTGATCGGCTATCCACATCCTTTACACTGAGAGGCCGCAGCAAAATGAGGAGCCTGAGCTATCACATTCGAACCCTAGCCTTCGTCCTTGGCAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCAACAGGTCGCCGAAAATCTCGACACCTAAAGAAGAGGTCAAGCGTCTGCCGGGTGGGAAGGTCAAGAAAAAGGAGAAGCTGGAGGTTATTATTGAAAAGGTTACACACAATAAGCGAAAATGTATCACAACTATCAAAGGACTGGAGCTTTTTGGTGTCAAACTTAATGATACTTCAAAGAAGTTAGGGAAGAAATTTGCCACAGGAGCTTCTGTTGTCAAGGACAGTTCAGATGGTATCTACCAGAATCTTGTGACACTCATAAGTGGGTTTGAAACAACAACTGGGGAGCAGGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

196

Amino Acids

22.23

Weight (kDa)

9.61

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	124 - 172	3.5e-12	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458311 RchiOBHm_Chr3g0479821 RchiOBHm_Chr5g0058211 RchiOBHm_Chr7g0218771
rosa_laevigata	RLG00000002203 RLG00000002741 RLG00000010568 RLG00000030396 RLG00000032185
rosa_multiflora	Rmu_sc0020639.1_g000001 Rmu_ssc0000183.1_g000020
rosa_roxburghii	Rroxscaffold_1G00004630 Rroxscaffold_3G00275310
rosa_rugosa	Rorug02G0651800 Rorug03G0217800 Rorug03G0241500
rosa_samantha	Rh1AG036900 Rh1AG340400 Rh2AG308600 Rh2BG290700 Rh3AG229500 Rh3CG308300 Rh5CG223900 Rh5CG415900 Rh6BG135900 Rh6CG134300 Rh6DG000600 Rh6DG120600 Rh7CG365200 Rh7CG433800
rosa_wichuraiana	Rw1G020130 Rw2G005810 Rw2G007320 Rw2G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	383, 465, 563
AluBI	AGCT	6 cut(s)	45, 219, 282, 367, 436, 497
AluI	AGCT	6 cut(s)	45, 219, 282, 367, 436, 497
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	198, 259
ApoI	RAATTY	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	210, 246
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	339
BfaI	CTAG	1 cut(s)	236
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	3 cut(s)	196, 199, 260
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	3 cut(s)	197, 200, 261
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	582
BpmI	CTGGAG	2 cut(s)	389, 452
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	32, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	4 cut(s)	80, 263, 435, 577
BseDI	CCNNGG	2 cut(s)	32, 247
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	179, 206
BseNI	ACTGG	4 cut(s)	80, 263, 435, 577
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	210, 246
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	109, 163, 583
Bsp1720I	GCTNAGC	1 cut(s)	278
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	180, 207
BspLI	GGNNCC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	229
BsrI	ACTGG	4 cut(s)	80, 263, 435, 577
BssECI	CCNNGG	2 cut(s)	32, 247
BssMI	GATC	3 cut(s)	109, 163, 583
BssT1I	CCWWGG	2 cut(s)	32, 247
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	2 cut(s)	18, 315
BstBI	TTCGAA	1 cut(s)	229
BstDEI	CTNAG	3 cut(s)	188, 215, 278
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	3 cut(s)	112, 166, 586
BstMBI	GATC	3 cut(s)	109, 163, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	210, 246
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	185, 270
CseI	GACGC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	188, 215, 278
DpnI	GATC	3 cut(s)	111, 165, 585
DpnII	GATC	3 cut(s)	109, 163, 583
Eam1104I	CTCTTC	2 cut(s)	18, 315
EarI	CTCTTC	2 cut(s)	18, 315
Eco130I	CCWWGG	2 cut(s)	32, 247
EcoT14I	CCWWGG	2 cut(s)	32, 247
ErhI	CCWWGG	2 cut(s)	32, 247
FaiI	YATR	1 cut(s)	551
Fnu4HI	GCNGC	3 cut(s)	196, 199, 260
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	196, 199, 260
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	3 cut(s)	196, 199, 260
GsuI	CTGGAG	2 cut(s)	389, 452
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	320
HinfI	GANTC	3 cut(s)	26, 269, 535
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	3 cut(s)	161, 307, 352
HpyAV	CCTTC	2 cut(s)	250, 340
HpyCH4III	ACNGT	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	3 cut(s)	188, 215, 278
Kzo9I	GATC	3 cut(s)	109, 163, 583
LmnI	GCTCC	4 cut(s)	210, 433, 494, 577
Lsp1109I	GCAGC	2 cut(s)	210, 246
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	5 cut(s)	27, 62, 91, 388, 541
MalI	GATC	3 cut(s)	111, 165, 585
MboI	GATC	3 cut(s)	109, 163, 583
MboII	GAAGA	6 cut(s)	35, 77, 146, 149, 332, 490
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	3 cut(s)	50, 70, 482
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	185, 201, 316, 364
MseI	TTAA	2 cut(s)	69, 453
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	339
NdeII	GATC	3 cut(s)	109, 163, 583
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	27, 62, 541
NspV	TTCGAA	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	269, 535
PkrI	GCNGC	3 cut(s)	197, 200, 261
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	69, 453
SatI	GCNGC	3 cut(s)	196, 199, 260
Sau3AI	GATC	3 cut(s)	109, 163, 583
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	229
Sse9I	AATT	3 cut(s)	50, 70, 482
SsiI	CCGC	1 cut(s)	196
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	32, 247
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	3 cut(s)	88, 229, 308
TasI	AATT	3 cut(s)	50, 70, 482
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	269, 535
Tru1I	TTAA	2 cut(s)	69, 453
Tru9I	TTAA	2 cut(s)	69, 453
TscAI	CASTG	2 cut(s)	192, 270
TseFI	GTSAC	3 cut(s)	27, 62, 541
TseI	GCWGC	2 cut(s)	198, 259
Tsp45I	GTSAC	3 cut(s)	27, 62, 541
TspRI	CASTG	2 cut(s)	192, 270
XapI	RAATTY	1 cut(s)	482
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.