Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454035.1

Orthogroup ID

OG0003701

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1266

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454035.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgcaggctgtgttcccgaacttaacttcgttgacagtacataggtgtggtcgcctaagcttcttgttttcaatttctatggctaaaagtcttgtgggactcaaacatcttgagatatccacttgtgcaatcatagaagagattgtttcatcaacaggagaacatggtcaacaaaatatggataacatgttccctaagttggaagatttgaagctaaatgaacttccaacccttgccagattttgctccggaagttatattcaacttctgtccttagaaaaattggatataggaggttgtagtaaactgggtgcattcatttctgataatgttgctatgagtggtgaagatattagaatctgcaaagaaattgaagagaaggactctgaagagaaccttgatgttaacagcaagctgaatactgcacaatgcttcctctttgacgaaaagattggtttgcctaacttgacaagcttgatggttcaccgatgtgatggtttaaatttcttactgttatcttccatggcaagaagtcttgtaaaactcaaacatcttgtgatatctgaatgtcaaagaatggaagcggtattgacaaaagaacacagtgaagaaaacaaggataacatgtttcctgagttaaaagaattggacctaaaggatcttcctcatcttgttagattctgctcaggaaattattttgaatttgcatctatggagagattgcaattagaaaagtgtgctaaattggagacattcatctgtaatccctcgagtaccagtattgcaagccaaaaagaaatggaaagagtggacaagaatgagaaccttgagacagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

279

Amino Acids

31.47

Weight (kDa)

5.1

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003701)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085081 RchiOBHm_Chr2g0111441 RchiOBHm_Chr7g0202501 RchiOBHm_Chr7g0203351 RchiOBHm_Chr7g0236751 RchiOBHm_Chr7g0236761
rosa_laevigata	RLG00000003593 RLG00000003598
rosa_multiflora	Rmu_co8454035.1_g000001 Rmu_sc0001389.1_g000006 Rmu_sc0009832.1_g000003 Rmu_sc0013542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132350 Rroxscaffold_2G00132380 Rroxscaffold_3G00224900 Rroxscaffold_3G00254560
rosa_rugosa	Rorug02G0174000 Rorug02G0174100 Rorug02G0174100
rosa_samantha	Rh2AG226800 Rh2BG238600 Rh2CG230700 Rh2DG007300 Rh2DG234400 Rh2DG235400 Rh7AG198500 Rh7AG454300 Rh7BG199800 Rh7BG425300 Rh7BG425400 Rh7CG210000 Rh7DG205400 Rh7DG441800 Rh7DG441900
rosa_wichuraiana	Rw7G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	1 cut(s)	666
AcsI	RAATTY	2 cut(s)	502, 701
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	39, 775
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	186, 624
AgsI	TTSAA	5 cut(s)	72, 211, 263, 374, 701
AleI	CACNNNNGTG	1 cut(s)	489
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	4 cut(s)	60, 214, 415, 474
AluI	AGCT	4 cut(s)	60, 214, 415, 474
Alw26I	GTCTC	2 cut(s)	743, 824
AlwI	GGATC	1 cut(s)	666
Ama87I	CYCGRG	1 cut(s)	769
Aor13HI	TCCGGA	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	502, 701
AspS9I	GGNCC	1 cut(s)	649
AsuHPI	GGTGA	2 cut(s)	356, 476
AvaI	CYCGRG	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	649
BccI	CCATC	2 cut(s)	472, 488
BcoDI	GTCTC	2 cut(s)	743, 824
Bme18I	GGWCC	1 cut(s)	649
BmeT110I	CYCGRG	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	649
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
Bpu10I	CCTNAGC	2 cut(s)	56, 685
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	312, 777
BseAI	TCCGGA	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	624, 699
BseNI	ACTGG	2 cut(s)	312, 777
BsgI	GTGCAG	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	769
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	743, 824
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	769
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	658
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	584
BspCNI	CTCAG	2 cut(s)	625, 698
BspEI	TCCGGA	1 cut(s)	248
BspPI	GGATC	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	312, 777
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	37, 513, 605
Bst6I	CTCTTC	3 cut(s)	132, 369, 384
BstC8I	GCNNGC	3 cut(s)	6, 413, 787
BstDEI	CTNAG	5 cut(s)	56, 195, 274, 633, 685
BstDSI	CCRYGG	1 cut(s)	522
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	2 cut(s)	743, 824
BstMBI	GATC	1 cut(s)	658
BstNSI	RCATGY	2 cut(s)	190, 628
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	6, 413, 787
Cfr13I	GGNCC	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	38, 774
CviAII	CATG	4 cut(s)	164, 187, 523, 625
CviJI	RGCY	7 cut(s)	8, 60, 83, 214, 415, 474, 789
CviKI_1	RGCY	7 cut(s)	8, 60, 83, 214, 415, 474, 789
CviQI	GTAC	2 cut(s)	38, 774
DdeI	CTNAG	5 cut(s)	56, 195, 274, 633, 685
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
DraI	TTTAAA	1 cut(s)	501
Eam1104I	CTCTTC	3 cut(s)	132, 369, 384
EarI	CTCTTC	3 cut(s)	132, 369, 384
Eco130I	CCWWGG	1 cut(s)	522
Eco32I	GATATC	2 cut(s)	117, 561
Eco47I	GGWCC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	769
EcoRV	GATATC	2 cut(s)	117, 561
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	167, 190, 526, 628
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	4 cut(s)	163, 186, 522, 624
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	4 cut(s)	167, 190, 526, 628
HincII	GTYRAC	3 cut(s)	33, 170, 406
HindII	GTYRAC	3 cut(s)	33, 170, 406
HindIII	AAGCTT	2 cut(s)	58, 472
HinfI	GANTC	4 cut(s)	99, 357, 383, 678
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	356, 476
Hpy166II	GTNNAC	6 cut(s)	33, 170, 305, 406, 484, 811
Hpy188I	TCNGA	3 cut(s)	325, 388, 565
Hpy188III	TCNNGA	5 cut(s)	16, 110, 249, 632, 687
Hpy8I	GTNNAC	6 cut(s)	33, 170, 305, 406, 484, 811
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	37, 513, 605
HpyCH4V	TGCA	8 cut(s)	4, 128, 314, 363, 425, 707, 724, 785
HpyF3I	CTNAG	5 cut(s)	56, 195, 274, 633, 685
Hsp92II	CATG	4 cut(s)	167, 190, 526, 628
Kpn2I	TCCGGA	1 cut(s)	248
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	7 cut(s)	141, 250, 262, 293, 645, 672, 790
LweI	GCATC	1 cut(s)	716
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MboII	GAAGA	8 cut(s)	149, 215, 359, 386, 401, 510, 620, 653
MflI	RGATCY	1 cut(s)	658
MluCI	AATT	9 cut(s)	72, 281, 369, 502, 644, 691, 701, 725, 743
MlyI	GAGTC	2 cut(s)	93, 377
MmeI	TCCRAC	2 cut(s)	180, 251
MnlI	CCTC	4 cut(s)	287, 446, 675, 778
MroI	TCCGGA	1 cut(s)	248
MseI	TTAA	4 cut(s)	23, 405, 500, 638
MslI	CAYNNNNRTG	2 cut(s)	45, 489
MspI	CCGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	1 cut(s)	658
NlaIII	CATG	4 cut(s)	167, 190, 526, 628
NspI	RCATGY	2 cut(s)	190, 628
OliI	CACNNNNGTG	1 cut(s)	489
PaeR7I	CTCGAG	1 cut(s)	769
PciI	ACATGT	2 cut(s)	186, 624
PctI	GAATGC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	357, 678
PleI	GAGTC	2 cut(s)	93, 377
PpsI	GAGTC	2 cut(s)	93, 377
PscI	ACATGT	2 cut(s)	186, 624
PspPI	GGNCC	1 cut(s)	649
PspXI	VCTCGAGB	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	39, 775
RsaNI	GTAC	2 cut(s)	38, 774
RseI	CAYNNNNRTG	2 cut(s)	45, 489
SaqAI	TTAA	4 cut(s)	23, 405, 500, 638
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	2 cut(s)	93, 377
SetI	ASST	9 cut(s)	47, 62, 216, 298, 399, 417, 476, 654, 828
SfaNI	GCATC	1 cut(s)	716
Sfr274I	CTCGAG	1 cut(s)	769
SinI	GGWCC	1 cut(s)	649
SlaI	CTCGAG	1 cut(s)	769
SmiMI	CAYNNNNRTG	2 cut(s)	45, 489
SmlI	CTYRAG	3 cut(s)	110, 769, 827
SmoI	CTYRAG	3 cut(s)	110, 769, 827
Sse9I	AATT	9 cut(s)	72, 281, 369, 502, 644, 691, 701, 725, 743
SsiI	CCGC	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	37, 513, 605
TaqI	TCGA	1 cut(s)	770
TasI	AATT	9 cut(s)	72, 281, 369, 502, 644, 691, 701, 725, 743
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	357, 678
Tru1I	TTAA	4 cut(s)	23, 405, 500, 638
Tru9I	TTAA	4 cut(s)	23, 405, 500, 638
TscAI	CASTG	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	138, 234, 307, 745
TspRI	CASTG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	2 cut(s)	502, 701
XceI	RCATGY	2 cut(s)	190, 628
XhoI	CTCGAG	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.