Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003701

Physical Location & Seq

Genomic Coordinates Forward (+)

62721586 .. 62724356

Gene Structure 2771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG441800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACTGAGACGACCCTCAACACACTAAAAGTGAAGCTCACTACTGCTAGCATTGAAGAATTGGATGAAGGCCTAAAATTTCTTGTGAAAAGATCAGAAGACTTGTCCTTATATGCGGAGGGCATGAATAACATTGTCCATTCAATGAACACAGAAGATTTTGAGCATCTGAAACATCTGCAACTCCAAAGCAACATTGATTTTAATCATATTATAAACAAGAAGGTTGTATTCCCGAATTTAAGGACCTTGAGAGTACATAGATGTGATCGCCCAAGCTTTTTGTTCTCATTTTCTATGCCTGAAAGTCTTGCGGAACTCAAACATCTCGAGATATCCACATGTGAAATTATGGAAGAGAGTCTATCATCAACAAGAGAATACGGCCAAGAAATTATGGATTACATGTTTTATAAGCGGGAAGATTTGAAGTTAAATGAATTGCCAAACATCACCAGATTTTGTTCAGGAAGCATAGAAAAATTGGACACAGAAGGTTGGATTAAACTTGGGGCTTGTAATGCAGCTATGAATAGAAATACGAACGAAATTGAAGAGACTCACTCGGAAGAGAACCTTGATATTACGAACGAGTTGGTTACCATAAAATACTTCCTCTTTGACCTAAAGGCTGTGTTCCCGAAGTTAACAAACTTGACAGTACATGAGTGTGATCGTCTAAGCTTCTTGTTCACAATTTCTATGGCTAAAAGTCTCGACTCCGAAGGGAACAACTCGTTGAATACTGTACAATACTTCCTCTTTGACGAAAAGATGGGTTTGCCTAACTTGACAAGCTTGGTGGTTCATCGATGTGATGGTTTACGTTTCTTATCATCCATGGCAAGAAGTCTTGTACAACTCAAACATCTTGTGATATCTGAATGTCAAATCATGGAAGTAGTATTGACCGAAGTATACAATGAAGAGAACAAGGATAACATGTTTCCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

318

Amino Acids

36.81

Weight (kDa)

5.12

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	57 - 152	5.3e-09	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	261 - 303	3.9e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003701)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085081 RchiOBHm_Chr2g0111441 RchiOBHm_Chr7g0202501 RchiOBHm_Chr7g0203351 RchiOBHm_Chr7g0236751 RchiOBHm_Chr7g0236761
rosa_laevigata	RLG00000003593 RLG00000003598
rosa_multiflora	Rmu_co8454035.1_g000001 Rmu_sc0001389.1_g000006 Rmu_sc0009832.1_g000003 Rmu_sc0013542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132350 Rroxscaffold_2G00132380 Rroxscaffold_3G00224900 Rroxscaffold_3G00254560
rosa_rugosa	Rorug02G0174000 Rorug02G0174100 Rorug02G0174100
rosa_samantha	Rh2AG226800 Rh2BG238600 Rh2CG230700 Rh2DG007300 Rh2DG234400 Rh2DG235400 Rh7AG198500 Rh7AG454300 Rh7BG199800 Rh7BG425300 Rh7BG425400 Rh7CG210000 Rh7DG205400 Rh7DG441800 Rh7DG441900
rosa_wichuraiana	Rw7G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	215, 414
AccI	GTMKAC	1 cut(s)	918
AciI	CCGC	3 cut(s)	116, 314, 418
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	77, 238
AfaI	GTAC	4 cut(s)	258, 663, 750, 858
AflIII	ACRYGT	3 cut(s)	341, 405, 942
AgsI	TTSAA	5 cut(s)	56, 144, 430, 554, 742
AluBI	AGCT	5 cut(s)	37, 279, 527, 684, 798
AluI	AGCT	5 cut(s)	37, 279, 527, 684, 798
Alw26I	GTCTC	3 cut(s)	2, 551, 719
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	70, 385
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	77, 238
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	445
AsuNHI	GCTAGC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	2 cut(s)	769, 812
BceAI	ACGGC	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	2, 551, 719
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	246
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpuEI	CTTGAG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	811
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	811
BseDI	CCNNGG	1 cut(s)	840
BseGI	GGATG	2 cut(s)	70, 836
BseJI	GATNNNNATC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	536
BshFI	GGCC	2 cut(s)	72, 387
BshVI	ATCGAT	1 cut(s)	811
BsiHKCI	CYCGRG	1 cut(s)	329
BsmAI	GTCTC	3 cut(s)	2, 551, 719
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	72, 387
BsoBI	CYCGRG	1 cut(s)	329
Bsp1407I	TGTACA	2 cut(s)	748, 856
Bsp143I	GATC	3 cut(s)	92, 268, 673
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	3 cut(s)	116, 314, 418
BspANI	GGCC	2 cut(s)	72, 387
BspDI	ATCGAT	1 cut(s)	811
BspOI	GCTAGC	1 cut(s)	51
BsrGI	TGTACA	2 cut(s)	748, 856
BssECI	CCNNGG	1 cut(s)	840
BssMI	GATC	3 cut(s)	92, 268, 673
BssNAI	GTATAC	1 cut(s)	919
BssT1I	CCWWGG	1 cut(s)	840
Bst1107I	GTATAC	1 cut(s)	919
Bst4CI	ACNGT	2 cut(s)	661, 748
Bst6I	CTCTTC	4 cut(s)	351, 549, 564, 921
BstAUI	TGTACA	2 cut(s)	748, 856
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	6, 680, 951
BstDSI	CCRYGG	1 cut(s)	840
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	70, 836
BstKTI	GATC	3 cut(s)	95, 271, 676
BstMAI	GTCTC	3 cut(s)	2, 551, 719
BstMBI	GATC	3 cut(s)	92, 268, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNSI	RCATGY	3 cut(s)	345, 409, 946
BstPI	GGTNACC	1 cut(s)	598
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	919
Bsu15I	ATCGAT	1 cut(s)	811
BsuRI	GGCC	2 cut(s)	72, 387
BsuTUI	ATCGAT	1 cut(s)	811
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	2 cut(s)	70, 836
Cac8I	GCNNGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	811
Csp6I	GTAC	4 cut(s)	257, 662, 749, 857
CspCI	CAANNNNNGTGG	2 cut(s)	783, 818
CviAII	CATG	7 cut(s)	124, 342, 406, 665, 841, 895, 943
CviQI	GTAC	4 cut(s)	257, 662, 749, 857
DdeI	CTNAG	3 cut(s)	6, 680, 951
DpnI	GATC	3 cut(s)	94, 270, 675
DpnII	GATC	3 cut(s)	92, 268, 673
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	4 cut(s)	351, 549, 564, 921
EarI	CTCTTC	4 cut(s)	351, 549, 564, 921
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	1 cut(s)	72
Eco32I	GATATC	2 cut(s)	336, 879
Eco47I	GGWCC	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	598
EcoRV	GATATC	2 cut(s)	336, 879
EcoT14I	CCWWGG	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	7 cut(s)	127, 345, 409, 668, 844, 898, 946
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FatI	CATG	7 cut(s)	123, 341, 405, 664, 840, 894, 942
FauI	CCCGC	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	2 cut(s)	77, 823
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	72, 387
Hin1II	CATG	7 cut(s)	127, 345, 409, 668, 844, 898, 946
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HindIII	AAGCTT	3 cut(s)	277, 682, 796
HinfI	GANTC	3 cut(s)	361, 559, 719
HpaI	GTTAAC	1 cut(s)	648
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	4 cut(s)	648, 693, 824, 919
Hpy188I	TCNGA	5 cut(s)	97, 171, 568, 724, 883
Hpy188III	TCNNGA	6 cut(s)	235, 329, 331, 468, 640, 716
Hpy8I	GTNNAC	4 cut(s)	648, 693, 824, 919
HpyAV	CCTTC	4 cut(s)	62, 217, 488, 719
HpyCH4III	ACNGT	2 cut(s)	661, 748
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	2 cut(s)	181, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	3 cut(s)	6, 680, 951
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	7 cut(s)	127, 345, 409, 668, 844, 898, 946
KspAI	GTTAAC	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	92, 268, 673
LpnPI	CCDG	3 cut(s)	315, 453, 469
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	3 cut(s)	94, 270, 675
MboI	GATC	3 cut(s)	92, 268, 673
MboII	GAAGA	8 cut(s)	68, 110, 167, 368, 434, 566, 581, 938
MluCI	AATT	9 cut(s)	59, 77, 238, 348, 393, 440, 482, 549, 696
MlyI	GAGTC	3 cut(s)	370, 553, 713
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	4 cut(s)	26, 112, 626, 770
MseI	TTAA	5 cut(s)	204, 242, 434, 504, 647
MslI	CAYNNNNRTG	3 cut(s)	264, 669, 813
MwoI	GCNNNNNNNGC	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	3 cut(s)	92, 268, 673
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	7 cut(s)	127, 345, 409, 668, 844, 898, 946
NspI	RCATGY	3 cut(s)	345, 409, 946
PaeR7I	CTCGAG	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	72
PciI	ACATGT	3 cut(s)	341, 405, 942
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	3 cut(s)	369, 553, 713
PpsI	GAGTC	3 cut(s)	369, 553, 713
PpuMI	RGGWCCY	1 cut(s)	246
PscI	ACATGT	3 cut(s)	341, 405, 942
PsiI	TTATAA	2 cut(s)	215, 414
Psp5II	RGGWCCY	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
RsaI	GTAC	4 cut(s)	258, 663, 750, 858
RsaNI	GTAC	4 cut(s)	257, 662, 749, 857
RseI	CAYNNNNRTG	3 cut(s)	264, 669, 813
SaqAI	TTAA	5 cut(s)	204, 242, 434, 504, 647
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	3 cut(s)	92, 268, 673
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	3 cut(s)	370, 553, 713
SfaNI	GCATC	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	3 cut(s)	264, 669, 813
SmlI	CTYRAG	2 cut(s)	250, 329
SmoI	CTYRAG	2 cut(s)	250, 329
Sse9I	AATT	9 cut(s)	59, 77, 238, 348, 393, 440, 482, 549, 696
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	3 cut(s)	116, 314, 418
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	661, 748
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	3 cut(s)	330, 717, 811
TaqII	GACCGA	1 cut(s)	926
TasI	AATT	9 cut(s)	59, 77, 238, 348, 393, 440, 482, 549, 696
TatI	WGTACW	4 cut(s)	256, 661, 748, 856
Tru1I	TTAA	5 cut(s)	204, 242, 434, 504, 647
Tru9I	TTAA	5 cut(s)	204, 242, 434, 504, 647
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	7 cut(s)	81, 140, 161, 453, 545, 797, 939
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	2 cut(s)	77, 238
XceI	RCATGY	3 cut(s)	345, 409, 946
XhoI	CTCGAG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	918
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.