Rh7DG205400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003701
Physical Location & Seq
Reverse (-)
19446394 .. 19450522
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG205400.1

Sequence Viewer

Length: 3837 bp
ATGGCGATTAGATTTACGGAGGCAATTCTTTTTAAAACTAAGGAGACAATTGAACTCGTAGGACGCCAAGTGGGATATGTAATTCACTGCAAAAGCAACCTTCAAAGACTGCAGGCTCAATTGGAAGAATTGAACGCCGCCCGGGAGGCTGTAGAGGATAAAGTTGTGGAAGCTGAAGACAAAGGTGAAGCAGTTCAACCAGATGTCCAGTTGTGGCTACAGGAAGTGGGCAACATCAATGCACAGGCAGAGGAATTGTTGAAAGATGAAAACCAAGCCAAGCTGAAATGTCTCCTTGGGTTTTGTCCTAATCTGACAATCCGTCATCACCTAGGCAGGAAATCAAAAATATTGGTGCACCATCTTGTTGAACTCTATGAAAGACGAGAATTTCCCGTTATTTCTGTTATTCGGCCGCAAGAGCTTTGGGTTGAGTCCACCGGAGAGTACCTGGCCTTTCCATCAAGGACATCAGTTGTGGCCCAAATCATGGATGAACTTGAGAATCCTAATACTCATAGGATCGGGGTGTATGGAATTGAAGGTGTGGGTAAAACCACACTAGCAAAAGAAGTCTACAGGCAAGCTACAGAAGATAAAAATTTATTTGACAATGTGGTTATCCTACTAGATGTGAAAGAAAATCCACACTTGGAAGGAATTCAAAACAAAATTTTAAATAAGTTAGATATGAAGATTTTTGATGATGAGAATTTAGATGGAAGAGCAAGTCGTACTTCTGCCGATATACAGGACAAAAACATCCTTGTAATTCTGGATGATGTTTGGGAACAAATTGACTTGGAGGCTCTCCAACTTCCAAGTGTGGCTACTTGTAAGATATTGCTGACATGTACAAGTAGAGAATCGTTATCTGGTATGAACACGCAGGTAGATTTTCAGCTTGACATCTTGGTGGAAGAAGAGGCTTGGATTCTATTTAAGAAGAAGGCAGGCGACGTTGTTAAGAATTATGCTATACGAGAAGTAGCACTCCAAGTAGCCGAATGTTGTAGTGGCTTGCCTATTTTAGTTGTCACAGTTGCAAGCGCTTTGAAGAAACAAACTACTTCACCTCCATGGAAAGATGCATTGAGATGCCTAAAAAGCCAAGAATTTACAGAGAACCCATACTTGTGTCTGGAGTGGAGTTACGATCAGCTGAAGGATAAGGAACTTGAGCAGTTGTTCTTGCTATGTGGATTTGCTATATGGGGAAAGGATATTTATTTGCCAGCCTTGCTGAAATATAGTATGGGTTTGGGTCTCTTTAGAAAGGGATACACAGTGGAGGAAGCACAAAATACATTGCTTAAATGGGTTGGAAAACTAAAAGATTCTTGTCTACTGACAGATAGTGATGATAGCAGATATGTCAAAATGCATAACCTTGTGCGTGATGTTGCTAACCGGATTGCACTCAGAGATGAACACATCTTATCATCAGTCGATGATAGGGGAAATTATGAATTTAAGGAATGGCTAGATAAGGATTTCTTCAAAAAGTGCACTATGAAATCTTTACAATCTAGTACTGTTCCTGTGCTTTCTGAAGTACCTAGGATATACCCCAAATTAAAGCTGTTCTATTTACACGGTACAGGTGATGTGTCAGTGGAAATCCCAACAAACTTTTTTAGAGAGATTGAGGAACTAAAAGTGTTGGATTTAACAAGACTGCATATGCTGTCACTACCTTCCTCTCTTCAGTACTTGAAGAATCTGCATGCCCTATTTTTAGATCAATGCATAGTGGGAGACACTGCTTTAGTTGGGGAGCTAAGTAACTTGGAAATTCTTAGCTTTTTCCAGTCCAATGTCAAACAATTACCAAAGGAAATAGGGAAACTGACCCGTCTTCAGTTGCTGGAATTATCTGATTGCTCTGAACTCGAAGTTATTTCACCTGGTGTCATCTCAAGCTTGGAGAGACTACAAGAATTGAGAATGAGAAACAGCTTCAACAAGTGGGAGGTTGAAGGTGAAAGAAGTAATGTGAGCCTTAGTGAGTTGAAGCATTTGTCTCAGCTATCTGTATTAGAGGTACATATTCCGAATACTGACATCCTTCCAGCAAACTTGTTCTCCCACGAGTTCGAAAGATTCAATATTGTTATTGGAGATGCATGGGTTGACAGATATACATCACGAGAGAAATTTATGGCTGAGACGACCCTCAAGACACTAAAACTCAAACTCACTACCAGCATTAAAGAATTGGATGAAGGATTAATATGGCTGCTGGAGAGATGTGAAGACTTGTCCTTAAGTGAGACACAGAATGCTAATAATATTGACCATTATTTAGATACTGAAGATTCTGAGCATCCGCAACATCTGCAAGTCATAAACATCTATAAGATTGGTTTGCCCAACTTAACAAGATTGGCTGTTCACCAATGTGATGGTTTAAGTTTCTTATTGTCATCTTCCGTGGCAAAAAGTTTTGTACAACTTAAACATCTTCGGATATCTGAATGTCAAATCATGAAAGAGGTAGTATTGTCAGAAGGTCACGGTGAAGAAAAGGATAACTTGTTTCCGAAGTTAGAACAATTGGAGCTAAATGATCTTCCTTGTCTCACTAGATTCTGTTCAGGAAGTTATGTTGAGTTTGCAGCTCTGAAGAGGTCGCAATTGGAGAAGTGTCCTAAATTGGAGACATTCATCTTTAATCATTTGAGTAACAGAATTCAAATCTACAAAGAAATTAAAGAAAGGGGCACAAATGATGAGAATGTTGAGACAGTTGCACCATACTTTCTTTTAGATGAAAAGGTGAAAACGTTGAGGTTGCATGGAATGGAGATCAAGCTCATGCATCTCTCAGAAGAGAGCCCAGTTTTTCCACTGTTGGAAATTCTAGAGGTGAAGTTTTGTGGATTGAATAACCTAAAGTTGTCTGCAATATCCTTTCGGAATCTAACAATTATAGAAGTAACTTTTTGCTGGCGATTGCAATATTTGACAAGTTATTCGGTAGCTCAAAGTTTAGTGGGACTGAAAAAATTGAAAGTTGATGAATGTAAAAATATGAAAGAAATCTTCACAAGTGAAGGAATTGAAGAAGATGCAAGTAATTGTGAGATTGTTTTCAGCCGGTTGCAACATTTGGAACTCAGTGATTTAATAAGTTTGGAAAGGTTTTGCTCGAGAAATTGCATTGTGAAAGTCCCATCCTTGCAAAGCAGTGCTTTACAGGTAAATTGGTGCCCATTCCAGTTGAAGATTTCCACTGAAAGGGTACTAGAAGAAGTTTCCGATATGCAACAGGATGTACATAAGTCGCATACTGGTAAAGAAGAGGTTCTCGACACAACTGAGTCTGCTTGTAGCCTGGAAACAAATCAGAAACAGCACATCCCAAACACCTCCAAAGTTTCTAAAGAAATCGAGTTTAATGAAGGAGAACTCCATGATGACAGACTTGTAAACAACGACGGGCCTCTATTGCCTGGCAATATTGCTGAAAGTAGTGAACATGGAATCAAAGCTGTCATTAAAGAAACTCCTATCAATTTCTTGGAGCATGCTGAGGTTATGGACCTACATCGGAAGCAAATTGTCACCAATACGCCAAAGAATCTTCAGGAGGCTGATTTTGGCATGGAAGAGAGCCTCATTGAACCTTTGAATGCAAATGAAGGCAGACCACTTCAATTGAAACAACTTAATGGGGTGCAAACTGATTCGTTGCTGCAAAGCATATCTGAGCTTGATGCCGACATAAAACATTTGCAGGAAGAATTAAGGGCCAAAGAAGCAGAGAGGATAGATAAACAGCAAAGGCTTGCCGACAGACTTGCGACAGTTGATCGGTTGTCCGATTCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1278

Amino Acids

145.94

Weight (kDa)

5.19

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 159 - 319 4.8e-24 NB-ARC domain
LRR_14 PF23598 591 - 686 4.8e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 791 - 889 4.7e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 964 - 1071 5.1e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 880
AccB1I GGYRCC 1 cut(s) 3210
AccB7I CCANNNNNTGG 1 cut(s) 490
AccI GTMKAC 2 cut(s) 576, 1345
AciI CCGC 3 cut(s) 138, 416, 2330
AclI AACGTT 1 cut(s) 2786
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 413
AcuI CTGAAG 8 cut(s) 195, 1184, 1572, 1691, 1844, 2334, 2645, 3572
AcyI GRCGYC 1 cut(s) 64
AdeI CACNNNGTG 1 cut(s) 1910
AfeI AGCGCT 1 cut(s) 1051
AfiI CCNNNNNNNGG 2 cut(s) 490, 3240
AflII CTTAAG 1 cut(s) 2266
AflIII ACRYGT 1 cut(s) 851
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 4 cut(s) 450, 1906, 3336, 3454
AleI CACNNNNGTG 1 cut(s) 2400
Alw21I GWGCWC 2 cut(s) 360, 1511
Alw44I GTGCAC 2 cut(s) 356, 1507
AlwI GGATC 1 cut(s) 530
AlwNI CAGNNNCTG 1 cut(s) 1867
Ama87I CYCGRG 2 cut(s) 141, 3151
Aor51HI AGCGCT 1 cut(s) 1051
AoxI GGCC 5 cut(s) 413, 453, 480, 3443, 3753
ApaLI GTGCAC 2 cut(s) 356, 1507
ApeKI GCWGC 3 cut(s) 2239, 2618, 3697
ArsI GACNNNNNNTTYG 2 cut(s) 2959, 2991
AseI ATTAAT 1 cut(s) 2231
Asp700I GAANNNNTTC 3 cut(s) 192, 660, 3306
AspA2I CCTAGG 2 cut(s) 331, 1559
AspLEI GCGC 1 cut(s) 1052
AspS9I GGNCC 4 cut(s) 481, 3443, 3544, 3753
AsuC2I CCSGG 2 cut(s) 142, 143
AsuII TTCGAA 1 cut(s) 2097
AvaI CYCGRG 2 cut(s) 141, 3151
AvaII GGWCC 1 cut(s) 3544
AvrII CCTAGG 2 cut(s) 331, 1559
BaeGI GKGCMC 4 cut(s) 360, 1511, 2726, 3215
BanI GGYRCC 1 cut(s) 3210
BanII GRGCYC 1 cut(s) 2840
BauI CACGAG 2 cut(s) 2090, 2148
BbsI GAAGAC 3 cut(s) 183, 1850, 2262
Bbv12I GWGCWC 2 cut(s) 360, 1511
BbvCI CCTCAGC 1 cut(s) 3534
BbvI GCAGC 3 cut(s) 2226, 2630, 3684
BccI CCATC 5 cut(s) 369, 469, 713, 2399, 3184
BcgI CGANNNNNNTGC 2 cut(s) 3785, 3819
BciT130I CCWGG 4 cut(s) 452, 1908, 3338, 3456
BciVI GTATCC 1 cut(s) 1274
BcnI CCSGG 2 cut(s) 142, 143
BfaI CTAG 9 cut(s) 332, 563, 629, 1484, 1530, 1560, 2586, 2864, 3248
BfmI CTRYAG 5 cut(s) 110, 150, 218, 577, 588
BfoI RGCGCY 1 cut(s) 1053
BfrI CTTAAG 1 cut(s) 2266
BfuAI ACCTGC 1 cut(s) 880
BfuI GTATCC 1 cut(s) 1274
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 5 cut(s) 138, 416, 2240, 2619, 3698
BlnI CCTAGG 2 cut(s) 331, 1559
BlsI GCNGC 5 cut(s) 139, 417, 2241, 2620, 3699
BmcAI AGTACT 2 cut(s) 1534, 1712
Bme1390I CCNGG 6 cut(s) 142, 143, 452, 1908, 3338, 3456
Bme18I GGWCC 1 cut(s) 3544
BmeRI GACNNNNNGTC 1 cut(s) 321
BmeT110I CYCGRG 2 cut(s) 141, 3151
BmgT120I GGNCC 4 cut(s) 481, 3443, 3544, 3753
BmiI GGNNCC 1 cut(s) 3212
BmrFI CCNGG 6 cut(s) 142, 143, 452, 1908, 3338, 3456
BmrI ACTGGG 1 cut(s) 2834
BmsI GCATC 7 cut(s) 1078, 1088, 2113, 2335, 2830, 3061, 3709
BmuI ACTGGG 1 cut(s) 2834
BpiI GAAGAC 3 cut(s) 183, 1850, 2262
BpmI CTGGAG 2 cut(s) 1163, 2264
Bpu10I CCTNAGC 1 cut(s) 3534
Bpu14I TTCGAA 1 cut(s) 2097
BpuEI CTTGAG 4 cut(s) 521, 1199, 1903, 2162
BpuMI CCSGG 2 cut(s) 142, 143
BsaBI GATNNNNATC 1 cut(s) 2143
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 1271
BsaJI CCNNGG 6 cut(s) 141, 295, 331, 1079, 1559, 2433
BsaWI WCCGGW 2 cut(s) 440, 1410
BsaXI ACNNNNNCTCC 4 cut(s) 1060, 1090, 2069, 2099
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 3240
Bse118I RCCGGY 1 cut(s) 3099
Bse1I ACTGG 5 cut(s) 208, 1810, 2840, 3220, 3298
Bse3DI GCAATG 1 cut(s) 1307
Bse8I GATNNNNATC 1 cut(s) 2143
BseBI CCWGG 4 cut(s) 452, 1908, 3338, 3456
BseDI CCNNGG 6 cut(s) 141, 295, 331, 1079, 1559, 2433
BseGI GGATG 9 cut(s) 499, 762, 784, 2064, 2227, 2326, 3176, 3280, 3360
BseJI GATNNNNATC 1 cut(s) 2143
BseLI CCNNNNNNNGG 2 cut(s) 490, 3240
BseMI GCAATG 1 cut(s) 1307
BseMII CTCAG 9 cut(s) 1435, 2039, 2157, 2313, 2841, 3133, 3312, 3525, 3702
BseNI ACTGG 5 cut(s) 208, 1810, 2840, 3220, 3298
BseSI GKGCMC 4 cut(s) 360, 1511, 2726, 3215
BseX3I CGGCCG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 2226, 2630, 3684
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 5 cut(s) 415, 455, 482, 3445, 3755
BshNI GGYRCC 1 cut(s) 3210
BsiEI CGRYCG 1 cut(s) 416
BsiHKAI GWGCWC 2 cut(s) 360, 1511
BsiHKCI CYCGRG 2 cut(s) 141, 3151
BsiSI CCGG 4 cut(s) 142, 441, 1411, 3100
BslFI GGGAC 2 cut(s) 3012, 3158
BslI CCNNNNNNNGG 2 cut(s) 490, 3240
BsmBI CGTCTC 1 cut(s) 2162
BsmFI GGGAC 2 cut(s) 3012, 3158
BsmI GAATGC 2 cut(s) 2287, 3640
BsnI GGCC 5 cut(s) 415, 455, 482, 3445, 3755
Bso31I GGTCTC 1 cut(s) 1271
BsoBI CYCGRG 2 cut(s) 141, 3151
Bsp119I TTCGAA 1 cut(s) 2097
Bsp1286I GDGCHC 5 cut(s) 360, 1511, 2726, 2840, 3215
Bsp1407I TGTACA 3 cut(s) 854, 2449, 3277
Bsp143I GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
Bsp19I CCATGG 1 cut(s) 1079
BspACI CCGC 3 cut(s) 138, 416, 2330
BspANI GGCC 5 cut(s) 415, 455, 482, 3445, 3755
BspCNI CTCAG 9 cut(s) 1434, 2038, 2158, 2314, 2840, 3132, 3313, 3526, 3703
BspHI TCATGA 1 cut(s) 2487
BspLI GGNNCC 1 cut(s) 3212
BspMAI CTGCAG 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 880
BspPI GGATC 1 cut(s) 530
BspQI GCTCTTC 1 cut(s) 718
BspT104I TTCGAA 1 cut(s) 2097
BspT107I GGYRCC 1 cut(s) 3210
BspTI CTTAAG 1 cut(s) 2266
BspTNI GGTCTC 1 cut(s) 1271
BsrDI GCAATG 1 cut(s) 1307
BsrFI RCCGGY 1 cut(s) 3099
BsrGI TGTACA 3 cut(s) 854, 2449, 3277
BsrI ACTGG 5 cut(s) 208, 1810, 2840, 3220, 3298
BssAI RCCGGY 1 cut(s) 3099
BssECI CCNNGG 6 cut(s) 141, 295, 331, 1079, 1559, 2433
BssMI GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
BssNI GRCGYC 1 cut(s) 64
BssSI CACGAG 2 cut(s) 2090, 2148
BssT1I CCWWGG 4 cut(s) 295, 331, 1079, 1559
Bst2BI CACGAG 2 cut(s) 2090, 2148
Bst2UI CCWGG 4 cut(s) 452, 1908, 3338, 3456
Bst4CI ACNGT 8 cut(s) 1042, 1288, 1537, 1598, 2519, 2749, 2853, 3811
Bst6I CTCTTC 7 cut(s) 718, 918, 1710, 2621, 2826, 3297, 3606
BstACI GRCGYC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 2266
BstAPI GCANNNNNTGC 1 cut(s) 2338
BstAUI TGTACA 3 cut(s) 854, 2449, 3277
BstBI TTCGAA 1 cut(s) 2097
BstDSI CCRYGG 2 cut(s) 1079, 2433
BstF5I GGATG 9 cut(s) 499, 762, 784, 2064, 2227, 2326, 3176, 3280, 3360
BstH2I RGCGCY 1 cut(s) 1053
BstHHI GCGC 1 cut(s) 1052
BstKTI GATC 6 cut(s) 525, 1159, 1744, 2572, 2811, 3817
BstMBI GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 7 cut(s) 146, 421, 1107, 1240, 2338, 3451, 3761
BstNI CCWGG 4 cut(s) 452, 1908, 3338, 3456
BstNSI RCATGY 3 cut(s) 855, 1730, 3533
BstSCI CCNGG 6 cut(s) 140, 141, 450, 1906, 3336, 3454
BstSFI CTRYAG 5 cut(s) 110, 150, 218, 577, 588
BstSLI GKGCMC 4 cut(s) 360, 1511, 2726, 3215
BstV1I GCAGC 3 cut(s) 2226, 2630, 3684
BstV2I GAAGAC 3 cut(s) 183, 1850, 2262
BstXI CCANNNNNNTGG 1 cut(s) 2405
BstZI CGGCCG 1 cut(s) 413
BsuI GTATCC 1 cut(s) 1274
BsuRI GGCC 5 cut(s) 415, 455, 482, 3445, 3755
BtgI CCRYGG 2 cut(s) 1079, 2433
BtsCI GGATG 9 cut(s) 499, 762, 784, 2064, 2227, 2326, 3176, 3280, 3360
BtsI GCAGTG 3 cut(s) 85, 1761, 3196
BtsIMutI CAGTG 8 cut(s) 85, 1293, 1620, 1761, 2849, 3127, 3196, 3234
BveI ACCTGC 1 cut(s) 880
CaiI CAGNNNCTG 1 cut(s) 1867
CciI TCATGA 1 cut(s) 2487
CfoI GCGC 1 cut(s) 1052
Cfr10I RCCGGY 1 cut(s) 3099
Cfr13I GGNCC 4 cut(s) 481, 3443, 3544, 3753
Cfr9I CCCGGG 1 cut(s) 141
CseI GACGC 1 cut(s) 72
CsiI ACCWGGT 1 cut(s) 1906
CspCI CAANNNNNGTGG 2 cut(s) 3642, 3677
DpnI GATC 6 cut(s) 524, 1158, 1743, 2571, 2810, 3816
DpnII GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
DraI TTTAAA 2 cut(s) 34, 678
DraIII CACNNNGTG 1 cut(s) 1910
DriI GACNNNNNGTC 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 413
EagI CGGCCG 1 cut(s) 413
Eam1104I CTCTTC 7 cut(s) 718, 918, 1710, 2621, 2826, 3297, 3606
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 7 cut(s) 718, 918, 1710, 2621, 2826, 3297, 3606
EclXI CGGCCG 1 cut(s) 413
Eco130I CCWWGG 4 cut(s) 295, 331, 1079, 1559
Eco24I GRGCYC 1 cut(s) 2840
Eco31I GGTCTC 1 cut(s) 1271
Eco32I GATATC 1 cut(s) 2472
Eco47I GGWCC 1 cut(s) 3544
Eco47III AGCGCT 1 cut(s) 1051
Eco52I CGGCCG 1 cut(s) 413
Eco57I CTGAAG 8 cut(s) 195, 1184, 1572, 1691, 1844, 2334, 2645, 3572
Eco88I CYCGRG 2 cut(s) 141, 3151
EcoRI GAATTC 2 cut(s) 660, 2691
EcoRII CCWGG 4 cut(s) 450, 1906, 3336, 3454
EcoRV GATATC 1 cut(s) 2472
EcoT14I CCWWGG 4 cut(s) 295, 331, 1079, 1559
EcoT22I ATGCAT 5 cut(s) 1093, 1386, 1751, 2128, 2823
EcoT38I GRGCYC 1 cut(s) 2840
ErhI CCWWGG 4 cut(s) 295, 331, 1079, 1559
Esp3I CGTCTC 1 cut(s) 2162
FalI AAGNNNNNCTT 8 cut(s) 721, 753, 1481, 1513, 2519, 2551, 3178, 3210
FaqI GGGAC 2 cut(s) 3012, 3158
FauNDI CATATG 1 cut(s) 1683
FblI GTMKAC 2 cut(s) 576, 1345
Fnu4HI GCNGC 5 cut(s) 138, 416, 2240, 2619, 3698
FokI GGATG 9 cut(s) 506, 749, 791, 2051, 2234, 2313, 3163, 3287, 3347
FriOI GRGCYC 1 cut(s) 2840
Fsp4HI GCNGC 5 cut(s) 138, 416, 2240, 2619, 3698
FspBI CTAG 9 cut(s) 332, 563, 629, 1484, 1530, 1560, 2586, 2864, 3248
GlaI GCGC 1 cut(s) 1051
GluI GCNGC 5 cut(s) 138, 416, 2240, 2619, 3698
GsuI CTGGAG 2 cut(s) 1163, 2264
HaeII RGCGCY 1 cut(s) 1053
HaeIII GGCC 5 cut(s) 415, 455, 482, 3445, 3755
HapII CCGG 4 cut(s) 142, 441, 1411, 3100
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 1052
Hin1I GRCGYC 1 cut(s) 64
Hin6I GCGC 1 cut(s) 1050
HinP1I GCGC 1 cut(s) 1050
HincII GTYRAC 1 cut(s) 2134
HindII GTYRAC 1 cut(s) 2134
HindIII AAGCTT 1 cut(s) 1921
HpaII CCGG 4 cut(s) 142, 441, 1411, 3100
Hpy166II GTNNAC 9 cut(s) 358, 438, 577, 1346, 1509, 2134, 2395, 3433, 3479
Hpy8I GTNNAC 9 cut(s) 358, 438, 577, 1346, 1509, 2134, 2395, 3433, 3479
Hpy99I CGWCG 2 cut(s) 962, 3443
HpyCH4III ACNGT 8 cut(s) 1042, 1288, 1537, 1598, 2519, 2749, 2853, 3811
HpyCH4IV ACGT 2 cut(s) 960, 2786
HpyF10VI GCNNNNNNNGC 7 cut(s) 146, 421, 1107, 1240, 2338, 3451, 3761
HpySE526I ACGT 2 cut(s) 960, 2786
Hsp92I GRCGYC 1 cut(s) 64
HspAI GCGC 1 cut(s) 1050
Kzo9I GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 3 cut(s) 1777, 2560, 3526
Lsp1109I GCAGC 3 cut(s) 2226, 2630, 3684
LweI GCATC 7 cut(s) 1078, 1088, 2113, 2335, 2830, 3061, 3709
MabI ACCWGGT 1 cut(s) 1906
MaeI CTAG 9 cut(s) 332, 563, 629, 1484, 1530, 1560, 2586, 2864, 3248
MaeII ACGT 2 cut(s) 960, 2786
MaeIII GTNAC 8 cut(s) 1036, 1151, 1689, 1784, 2513, 2684, 2938, 3565
MalI GATC 6 cut(s) 524, 1158, 1743, 2571, 2810, 3816
MboI GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
MfeI CAATTG 5 cut(s) 48, 119, 2555, 2636, 3659
MhlI GDGCHC 5 cut(s) 360, 1511, 2726, 2840, 3215
MlyI GAGTC 2 cut(s) 443, 3332
MmeI TCCRAC 4 cut(s) 838, 1303, 1644, 2835
Mph1103I ATGCAT 5 cut(s) 1093, 1386, 1751, 2128, 2823
MroXI GAANNNNTTC 3 cut(s) 192, 660, 3306
MslI CAYNNNNRTG 5 cut(s) 914, 1078, 1096, 1135, 2400
MspA1I CMGCKG 1 cut(s) 1162
MspCI CTTAAG 1 cut(s) 2266
MspI CCGG 4 cut(s) 142, 441, 1411, 3100
MspR9I CCNGG 6 cut(s) 142, 143, 452, 1908, 3338, 3456
MunI CAATTG 5 cut(s) 48, 119, 2555, 2636, 3659
Mva1269I GAATGC 2 cut(s) 2287, 3640
MvaI CCWGG 4 cut(s) 452, 1908, 3338, 3456
MwoI GCNNNNNNNGC 7 cut(s) 146, 421, 1107, 1240, 2338, 3451, 3761
NciI CCSGG 2 cut(s) 142, 143
NcoI CCATGG 1 cut(s) 1079
NdeI CATATG 1 cut(s) 1683
NdeII GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
NlaIV GGNNCC 1 cut(s) 3212
NmuCI GTSAC 4 cut(s) 1036, 1689, 2513, 3565
NsiI ATGCAT 5 cut(s) 1093, 1386, 1751, 2128, 2823
NspI RCATGY 3 cut(s) 855, 1730, 3533
NspV TTCGAA 1 cut(s) 2097
OliI CACNNNNGTG 1 cut(s) 2400
PaeI GCATGC 2 cut(s) 1730, 3533
PaeR7I CTCGAG 1 cut(s) 3151
PagI TCATGA 1 cut(s) 2487
PciI ACATGT 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 718
PctI GAATGC 2 cut(s) 2287, 3640
PdmI GAANNNNTTC 3 cut(s) 192, 660, 3306
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 5 cut(s) 139, 417, 2241, 2620, 3699
PleI GAGTC 2 cut(s) 442, 3331
PpsI GAGTC 2 cut(s) 442, 3331
PscI ACATGT 1 cut(s) 851
PshBI ATTAAT 1 cut(s) 2231
Psp1406I AACGTT 1 cut(s) 2786
Psp6I CCWGG 4 cut(s) 450, 1906, 3336, 3454
PspGI CCWGG 4 cut(s) 450, 1906, 3336, 3454
PspN4I GGNNCC 1 cut(s) 3212
PspPI GGNCC 4 cut(s) 481, 3443, 3544, 3753
PstI CTGCAG 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 1867
PvuII CAGCTG 1 cut(s) 1162
RseI CAYNNNNRTG 5 cut(s) 914, 1078, 1096, 1135, 2400
SapI GCTCTTC 1 cut(s) 718
SatI GCNGC 5 cut(s) 138, 416, 2240, 2619, 3698
Sau3AI GATC 6 cut(s) 522, 1156, 1741, 2569, 2808, 3814
Sau96I GGNCC 4 cut(s) 481, 3443, 3544, 3753
ScaI AGTACT 2 cut(s) 1534, 1712
SchI GAGTC 2 cut(s) 443, 3332
ScrFI CCNGG 6 cut(s) 142, 143, 452, 1908, 3338, 3456
SduI GDGCHC 5 cut(s) 360, 1511, 2726, 2840, 3215
SexAI ACCWGGT 1 cut(s) 1906
SfaNI GCATC 7 cut(s) 1078, 1088, 2113, 2335, 2830, 3061, 3709
SfcI CTRYAG 5 cut(s) 110, 150, 218, 577, 588
Sfr274I CTCGAG 1 cut(s) 3151
SfuI TTCGAA 1 cut(s) 2097
SinI GGWCC 1 cut(s) 3544
SlaI CTCGAG 1 cut(s) 3151
SmaI CCCGGG 1 cut(s) 143
SmiMI CAYNNNNRTG 5 cut(s) 914, 1078, 1096, 1135, 2400
SmlI CTYRAG 6 cut(s) 500, 1178, 1918, 2177, 2266, 3151
SmoI CTYRAG 6 cut(s) 500, 1178, 1918, 2177, 2266, 3151
SphI GCATGC 2 cut(s) 1730, 3533
SsiI CCGC 3 cut(s) 138, 416, 2330
SspI AATATT 5 cut(s) 351, 2110, 2293, 2963, 3463
SspMI CTAG 9 cut(s) 332, 563, 629, 1484, 1530, 1560, 2586, 2864, 3248
StyD4I CCNGG 6 cut(s) 140, 141, 450, 1906, 3336, 3454
StyI CCWWGG 4 cut(s) 295, 331, 1079, 1559
TaaI ACNGT 8 cut(s) 1042, 1288, 1537, 1598, 2519, 2749, 2853, 3811
TaiI ACGT 2 cut(s) 963, 2789
TaqI TCGA 6 cut(s) 1449, 1893, 2097, 3152, 3312, 3393
TatI WGTACW 5 cut(s) 854, 1532, 1710, 2449, 3277
TauI GCSGC 2 cut(s) 140, 418
TscAI CASTG 8 cut(s) 92, 1293, 1620, 1768, 2856, 3127, 3196, 3241
TseFI GTSAC 4 cut(s) 1036, 1689, 2513, 3565
TseI GCWGC 3 cut(s) 2239, 2618, 3697
Tsp45I GTSAC 4 cut(s) 1036, 1689, 2513, 3565
TspGWI ACGGA 3 cut(s) 32, 311, 2422
TspMI CCCGGG 1 cut(s) 141
TspRI CASTG 8 cut(s) 92, 1293, 1620, 1768, 2856, 3127, 3196, 3241
Van91I CCANNNNNTGG 1 cut(s) 490
Vha464I CTTAAG 1 cut(s) 2266
VneI GTGCAC 2 cut(s) 356, 1507
VpaK11BI GGWCC 1 cut(s) 3544
VspI ATTAAT 1 cut(s) 2231
XbaI TCTAGA 1 cut(s) 2863
XceI RCATGY 3 cut(s) 855, 1730, 3533
XhoI CTCGAG 1 cut(s) 3151
XmaI CCCGGG 1 cut(s) 141
XmaJI CCTAGG 2 cut(s) 331, 1559
XmiI GTMKAC 2 cut(s) 576, 1345
XmnI GAANNNNTTC 3 cut(s) 192, 660, 3306
XspI CTAG 9 cut(s) 332, 563, 629, 1484, 1530, 1560, 2586, 2864, 3248
ZrmI AGTACT 2 cut(s) 1534, 1712
Zsp2I ATGCAT 5 cut(s) 1093, 1386, 1751, 2128, 2823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.