disease resistance
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0085081 RchiOBHm_Chr2g0111441 RchiOBHm_Chr7g0202501 RchiOBHm_Chr7g0203351 RchiOBHm_Chr7g0236751 RchiOBHm_Chr7g0236761 |
| rosa_laevigata | RLG00000003593 RLG00000003598 |
| rosa_multiflora | Rmu_co8454035.1_g000001 Rmu_sc0001389.1_g000006 Rmu_sc0009832.1_g000003 Rmu_sc0013542.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00132350 Rroxscaffold_2G00132380 Rroxscaffold_3G00224900 Rroxscaffold_3G00254560 |
| rosa_rugosa | Rorug02G0174000 Rorug02G0174100 Rorug02G0174100 |
| rosa_samantha | Rh2AG226800 Rh2BG238600 Rh2CG230700 Rh2DG007300 Rh2DG234400 Rh2DG235400 Rh7AG198500 Rh7AG454300 Rh7BG199800 Rh7BG425300 Rh7BG425400 Rh7CG210000 Rh7DG205400 Rh7DG441800 Rh7DG441900 |
| rosa_wichuraiana | Rw7G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 194, 2383 |
| AatII | GACGTC | 1 cut(s) | 3386 |
| Acc36I | ACCTGC | 3 cut(s) | 194, 2383, 2563 |
| AccI | GTMKAC | 1 cut(s) | 2605 |
| AccII | CGCG | 2 cut(s) | 240, 1357 |
| AciI | CCGC | 5 cut(s) | 403, 2619, 3256, 3352, 3549 |
| AclWI | GGATC | 4 cut(s) | 389, 2603, 2616, 2629 |
| AcoI | YGGCCR | 3 cut(s) | 714, 2354, 3526 |
| AcsI | RAATTY | 7 cut(s) | 512, 1062, 1907, 2194, 2414, 2724, 3476 |
| AcvI | CACGTG | 1 cut(s) | 2438 |
| AcyI | GRCGYC | 3 cut(s) | 3271, 3383, 3403 |
| AfaI | GTAC | 7 cut(s) | 237, 663, 802, 1743, 1945, 3108, 3144 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 723, 2618, 3102 |
| AflIII | ACRYGT | 3 cut(s) | 238, 1830, 2435 |
| AjnI | CCWGG | 2 cut(s) | 3375, 3528 |
| Alw21I | GWGCWC | 3 cut(s) | 1566, 3077, 3184 |
| Alw26I | GTCTC | 7 cut(s) | 1020, 1192, 1296, 1430, 1949, 2681, 2857 |
| AlwI | GGATC | 4 cut(s) | 389, 2603, 2616, 2629 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 982 |
| Ama87I | CYCGRG | 2 cut(s) | 2443, 3016 |
| AoxI | GGCC | 8 cut(s) | 529, 714, 2354, 2701, 3168, 3393, 3526, 3555 |
| ApaI | GGGCCC | 1 cut(s) | 3559 |
| ApeKI | GCWGC | 5 cut(s) | 1045, 1982, 2650, 2814, 3454 |
| ApoI | RAATTY | 7 cut(s) | 512, 1062, 1907, 2194, 2414, 2724, 3476 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 146, 3120, 3521 |
| AspLEI | GCGC | 1 cut(s) | 1359 |
| AspS9I | GGNCC | 5 cut(s) | 529, 2702, 3037, 3555, 3556 |
| AsuC2I | CCSGG | 2 cut(s) | 2411, 2705 |
| AsuHPI | GGTGA | 7 cut(s) | 218, 740, 884, 1164, 1710, 3043, 3400 |
| AvaI | CYCGRG | 2 cut(s) | 2443, 3016 |
| AvaII | GGWCC | 1 cut(s) | 3037 |
| BaeGI | GKGCMC | 2 cut(s) | 2576, 3559 |
| BalI | TGGCCA | 1 cut(s) | 2356 |
| BamHI | GGATCC | 1 cut(s) | 2621 |
| BanII | GRGCYC | 2 cut(s) | 3184, 3559 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 772, 804 |
| BauI | CACGAG | 1 cut(s) | 3204 |
| BbrPI | CACGTG | 1 cut(s) | 2438 |
| BbsI | GAAGAC | 4 cut(s) | 780, 1118, 1212, 3246 |
| Bbv12I | GWGCWC | 3 cut(s) | 1566, 3077, 3184 |
| BbvI | GCAGC | 5 cut(s) | 1057, 1969, 2637, 2801, 3441 |
| BccI | CCATC | 9 cut(s) | 287, 689, 716, 901, 1532, 1691, 2609, 3095, 3385 |
| BceAI | ACGGC | 2 cut(s) | 3339, 3562 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1103, 1137 |
| BciT130I | CCWGG | 2 cut(s) | 3377, 3530 |
| BciVI | GTATCC | 2 cut(s) | 825, 1483 |
| BcnI | CCSGG | 2 cut(s) | 2411, 2705 |
| BcoDI | GTCTC | 7 cut(s) | 1020, 1192, 1296, 1430, 1949, 2681, 2857 |
| BfmI | CTRYAG | 1 cut(s) | 3275 |
| BfuAI | ACCTGC | 3 cut(s) | 194, 2383, 2563 |
| BfuI | GTATCC | 2 cut(s) | 825, 1483 |
| BisI | GCNGC | 5 cut(s) | 1046, 1983, 2651, 2815, 3455 |
| BlsI | GCNGC | 5 cut(s) | 1047, 1984, 2652, 2816, 3456 |
| BmcAI | AGTACT | 1 cut(s) | 802 |
| Bme1390I | CCNGG | 4 cut(s) | 2411, 2705, 3377, 3530 |
| Bme18I | GGWCC | 1 cut(s) | 3037 |
| BmeT110I | CYCGRG | 2 cut(s) | 2443, 3016 |
| BmgT120I | GGNCC | 5 cut(s) | 529, 2702, 3037, 3555, 3556 |
| BmiI | GGNNCC | 4 cut(s) | 2623, 3039, 3556, 3557 |
| BmrFI | CCNGG | 4 cut(s) | 2411, 2705, 3377, 3530 |
| BmsI | GCATC | 9 cut(s) | 46, 126, 341, 879, 958, 1922, 2120, 2926, 3142 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2525 |
| BpiI | GAAGAC | 4 cut(s) | 780, 1118, 1212, 3246 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1396, 1428 |
| BpmI | CTGGAG | 3 cut(s) | 1445, 1874, 2193 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1891, 2055 |
| BpuEI | CTTGAG | 6 cut(s) | 234, 581, 1231, 1506, 1566, 2835 |
| BpuMI | CCSGG | 2 cut(s) | 2411, 2705 |
| Bsa29I | ATCGAT | 1 cut(s) | 1690 |
| BsaAI | YACGTR | 3 cut(s) | 665, 1052, 2438 |
| BsaBI | GATNNNNATC | 2 cut(s) | 372, 606 |
| BsaHI | GRCGYC | 3 cut(s) | 3271, 3383, 3403 |
| BsaJI | CCNNGG | 7 cut(s) | 1020, 1533, 2021, 2235, 2409, 3048, 3438 |
| BsaWI | WCCGGW | 1 cut(s) | 3480 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1443, 1473, 1643, 1673, 1887, 1917, 3195, 3225 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 723, 2618, 3102 |
| Bse118I | RCCGGY | 2 cut(s) | 2964, 3457 |
| Bse1I | ACTGG | 4 cut(s) | 798, 1083, 1857, 2462 |
| Bse8I | GATNNNNATC | 2 cut(s) | 372, 606 |
| BseBI | CCWGG | 2 cut(s) | 3377, 3530 |
| BseCI | ATCGAT | 1 cut(s) | 1690 |
| BseDI | CCNNGG | 7 cut(s) | 1020, 1533, 2021, 2235, 2409, 3048, 3438 |
| BseGI | GGATG | 7 cut(s) | 34, 61, 893, 1396, 1543, 2608, 3154 |
| BseJI | GATNNNNATC | 2 cut(s) | 372, 606 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 723, 2618, 3102 |
| BseMII | CTCAG | 6 cut(s) | 1081, 1091, 1266, 1307, 1905, 2122 |
| BseNI | ACTGG | 4 cut(s) | 798, 1083, 1857, 2462 |
| BseRI | GAGGAG | 1 cut(s) | 3322 |
| BseSI | GKGCMC | 2 cut(s) | 2576, 3559 |
| BseX3I | CGGCCG | 1 cut(s) | 714 |
| BseXI | GCAGC | 5 cut(s) | 1057, 1969, 2637, 2801, 3441 |
| BseYI | CCCAGC | 1 cut(s) | 3040 |
| BsgI | GTGCAG | 2 cut(s) | 796, 1968 |
| Bsh1236I | CGCG | 2 cut(s) | 240, 1357 |
| Bsh1285I | CGRYCG | 1 cut(s) | 717 |
| BshFI | GGCC | 8 cut(s) | 531, 716, 2356, 2703, 3170, 3395, 3528, 3557 |
| BshVI | ATCGAT | 1 cut(s) | 1690 |
| BsiEI | CGRYCG | 1 cut(s) | 717 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1566, 3077, 3184 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2443, 3016 |
| BsiSI | CCGG | 5 cut(s) | 2411, 2705, 2965, 3458, 3481 |
| BslFI | GGGAC | 5 cut(s) | 62, 78, 2259, 2696, 3023 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 723, 2618, 3102 |
| BsmAI | GTCTC | 7 cut(s) | 1020, 1192, 1296, 1430, 1949, 2681, 2857 |
| BsmBI | CGTCTC | 3 cut(s) | 1020, 1430, 2681 |
| BsmFI | GGGAC | 5 cut(s) | 62, 78, 2259, 2696, 3023 |
| BsmI | GAATGC | 3 cut(s) | 654, 686, 1330 |
| BsnI | GGCC | 8 cut(s) | 531, 716, 2356, 2703, 3170, 3395, 3528, 3557 |
| BsoBI | CYCGRG | 2 cut(s) | 2443, 3016 |
| Bsp120I | GGGCCC | 1 cut(s) | 3555 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1566, 2576, 3077, 3184, 3559 |
| Bsp1407I | TGTACA | 1 cut(s) | 1741 |
| Bsp143I | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| Bsp19I | CCATGG | 1 cut(s) | 3438 |
| BspACI | CCGC | 5 cut(s) | 403, 2619, 3256, 3352, 3549 |
| BspANI | GGCC | 8 cut(s) | 531, 716, 2356, 2703, 3170, 3395, 3528, 3557 |
| BspCNI | CTCAG | 6 cut(s) | 1080, 1090, 1267, 1306, 1904, 2121 |
| BspDI | ATCGAT | 1 cut(s) | 1690 |
| BspFNI | CGCG | 2 cut(s) | 240, 1357 |
| BspHI | TCATGA | 1 cut(s) | 1972 |
| BspLI | GGNNCC | 4 cut(s) | 2623, 3039, 3556, 3557 |
| BspMAI | CTGCAG | 1 cut(s) | 3279 |
| BspMI | ACCTGC | 3 cut(s) | 194, 2383, 2563 |
| BspPI | GGATC | 4 cut(s) | 389, 2603, 2616, 2629 |
| BsrFI | RCCGGY | 2 cut(s) | 2964, 3457 |
| BsrGI | TGTACA | 1 cut(s) | 1741 |
| BsrI | ACTGG | 4 cut(s) | 798, 1083, 1857, 2462 |
| BssAI | RCCGGY | 2 cut(s) | 2964, 3457 |
| BssECI | CCNNGG | 7 cut(s) | 1020, 1533, 2021, 2235, 2409, 3048, 3438 |
| BssMI | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| BssNI | GRCGYC | 3 cut(s) | 3271, 3383, 3403 |
| BssSI | CACGAG | 1 cut(s) | 3204 |
| BssT1I | CCWWGG | 6 cut(s) | 1020, 1533, 2021, 2235, 3048, 3438 |
| Bst2BI | CACGAG | 1 cut(s) | 3204 |
| Bst2UI | CCWGG | 2 cut(s) | 3377, 3530 |
| Bst6I | CTCTTC | 7 cut(s) | 168, 354, 539, 978, 1779, 2235, 3159 |
| BstACI | GRCGYC | 3 cut(s) | 3271, 3383, 3403 |
| BstAUI | TGTACA | 1 cut(s) | 1741 |
| BstBAI | YACGTR | 3 cut(s) | 665, 1052, 2438 |
| BstC8I | GCNNGC | 9 cut(s) | 301, 501, 561, 996, 1267, 2343, 2701, 3330, 3459 |
| BstDSI | CCRYGG | 1 cut(s) | 3438 |
| BstF5I | GGATG | 7 cut(s) | 34, 61, 893, 1396, 1543, 2608, 3154 |
| BstFNI | CGCG | 2 cut(s) | 240, 1357 |
| BstHHI | GCGC | 1 cut(s) | 1359 |
| BstKTI | GATC | 7 cut(s) | 376, 384, 1570, 1867, 2598, 2624, 3337 |
| BstMAI | GTCTC | 7 cut(s) | 1020, 1192, 1296, 1430, 1949, 2681, 2857 |
| BstMBI | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| BstMCI | CGRYCG | 1 cut(s) | 717 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 569, 859, 1266, 3188, 3299, 3338, 3563 |
| BstNI | CCWGG | 2 cut(s) | 3377, 3530 |
| BstNSI | RCATGY | 4 cut(s) | 998, 1613, 1834, 3191 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2525 |
| BstSCI | CCNGG | 4 cut(s) | 2409, 2703, 3375, 3528 |
| BstSFI | CTRYAG | 1 cut(s) | 3275 |
| BstSLI | GKGCMC | 2 cut(s) | 2576, 3559 |
| BstSNI | TACGTA | 1 cut(s) | 1052 |
| BstUI | CGCG | 2 cut(s) | 240, 1357 |
| BstV1I | GCAGC | 5 cut(s) | 1057, 1969, 2637, 2801, 3441 |
| BstV2I | GAAGAC | 4 cut(s) | 780, 1118, 1212, 3246 |
| BstX2I | RGATCY | 1 cut(s) | 2621 |
| BstYI | RGATCY | 1 cut(s) | 2621 |
| BstZI | CGGCCG | 1 cut(s) | 714 |
| Bsu15I | ATCGAT | 1 cut(s) | 1690 |
| BsuI | GTATCC | 2 cut(s) | 825, 1483 |
| BsuRI | GGCC | 8 cut(s) | 531, 716, 2356, 2703, 3170, 3395, 3528, 3557 |
| BsuTUI | ATCGAT | 1 cut(s) | 1690 |
| BtgI | CCRYGG | 1 cut(s) | 3438 |
| BtsCI | GGATG | 7 cut(s) | 34, 61, 893, 1396, 1543, 2608, 3154 |
| BtsI | GCAGTG | 1 cut(s) | 1421 |
| BtsIMutI | CAGTG | 8 cut(s) | 628, 1090, 1421, 1476, 1680, 1816, 2208, 2571 |
| BveI | ACCTGC | 3 cut(s) | 194, 2383, 2563 |
| Cac8I | GCNNGC | 9 cut(s) | 301, 501, 561, 996, 1267, 2343, 2701, 3330, 3459 |
| CaiI | CAGNNNCTG | 1 cut(s) | 982 |
| CciI | TCATGA | 1 cut(s) | 1972 |
| CfoI | GCGC | 1 cut(s) | 1359 |
| Cfr10I | RCCGGY | 2 cut(s) | 2964, 3457 |
| Cfr13I | GGNCC | 5 cut(s) | 529, 2702, 3037, 3555, 3556 |
| ClaI | ATCGAT | 1 cut(s) | 1690 |
| CseI | GACGC | 5 cut(s) | 578, 2663, 3260, 3411, 3455 |
| Csp6I | GTAC | 7 cut(s) | 236, 662, 801, 1742, 1944, 3107, 3143 |
| CviQI | GTAC | 7 cut(s) | 236, 662, 801, 1742, 1944, 3107, 3143 |
| DpnI | GATC | 7 cut(s) | 375, 383, 1569, 1866, 2597, 2623, 3336 |
| DpnII | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| DraI | TTTAAA | 1 cut(s) | 1008 |
| EaeI | YGGCCR | 3 cut(s) | 714, 2354, 3526 |
| EagI | CGGCCG | 1 cut(s) | 714 |
| Eam1104I | CTCTTC | 7 cut(s) | 168, 354, 539, 978, 1779, 2235, 3159 |
| EarI | CTCTTC | 7 cut(s) | 168, 354, 539, 978, 1779, 2235, 3159 |
| EciI | GGCGGA | 2 cut(s) | 2634, 3564 |
| Ecl136II | GAGCTC | 1 cut(s) | 3182 |
| EclXI | CGGCCG | 1 cut(s) | 714 |
| Eco105I | TACGTA | 1 cut(s) | 1052 |
| Eco130I | CCWWGG | 6 cut(s) | 1020, 1533, 2021, 2235, 3048, 3438 |
| Eco147I | AGGCCT | 1 cut(s) | 3170 |
| Eco24I | GRGCYC | 2 cut(s) | 3184, 3559 |
| Eco32I | GATATC | 1 cut(s) | 1637 |
| Eco47I | GGWCC | 1 cut(s) | 3037 |
| Eco52I | CGGCCG | 1 cut(s) | 714 |
| Eco53kI | GAGCTC | 1 cut(s) | 3182 |
| Eco72I | CACGTG | 1 cut(s) | 2438 |
| Eco88I | CYCGRG | 2 cut(s) | 2443, 3016 |
| EcoICRI | GAGCTC | 1 cut(s) | 3182 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3037, 3555 |
| EcoRI | GAATTC | 1 cut(s) | 3476 |
| EcoRII | CCWGG | 2 cut(s) | 3375, 3528 |
| EcoRV | GATATC | 1 cut(s) | 1637 |
| EcoT14I | CCWWGG | 6 cut(s) | 1020, 1533, 2021, 2235, 3048, 3438 |
| EcoT22I | ATGCAT | 3 cut(s) | 654, 996, 3135 |
| EcoT38I | GRGCYC | 2 cut(s) | 3184, 3559 |
| ErhI | CCWWGG | 6 cut(s) | 1020, 1533, 2021, 2235, 3048, 3438 |
| Esp3I | CGTCTC | 3 cut(s) | 1020, 1430, 2681 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 749, 781 |
| FaqI | GGGAC | 5 cut(s) | 62, 78, 2259, 2696, 3023 |
| FblI | GTMKAC | 1 cut(s) | 2605 |
| Fnu4HI | GCNGC | 5 cut(s) | 1046, 1983, 2651, 2815, 3455 |
| FokI | GGATG | 7 cut(s) | 41, 68, 880, 1403, 1550, 2595, 3141 |
| FriOI | GRGCYC | 2 cut(s) | 3184, 3559 |
| Fsp4HI | GCNGC | 5 cut(s) | 1046, 1983, 2651, 2815, 3455 |
| GlaI | GCGC | 1 cut(s) | 1358 |
| GluI | GCNGC | 5 cut(s) | 1046, 1983, 2651, 2815, 3455 |
| GsaI | CCCAGC | 1 cut(s) | 3044 |
| GsuI | CTGGAG | 3 cut(s) | 1445, 1874, 2193 |
| HaeIII | GGCC | 8 cut(s) | 531, 716, 2356, 2703, 3170, 3395, 3528, 3557 |
| HapII | CCGG | 5 cut(s) | 2411, 2705, 2965, 3458, 3481 |
| HgaI | GACGC | 5 cut(s) | 578, 2663, 3260, 3411, 3455 |
| HhaI | GCGC | 1 cut(s) | 1359 |
| Hin1I | GRCGYC | 3 cut(s) | 3271, 3383, 3403 |
| Hin6I | GCGC | 1 cut(s) | 1357 |
| HinP1I | GCGC | 1 cut(s) | 1357 |
| HincII | GTYRAC | 1 cut(s) | 2884 |
| HindII | GTYRAC | 1 cut(s) | 2884 |
| HindIII | AAGCTT | 4 cut(s) | 1189, 1675, 3230, 3326 |
| HpaII | CCGG | 5 cut(s) | 2411, 2705, 2965, 3458, 3481 |
| HphI | GGTGA | 7 cut(s) | 218, 740, 884, 1164, 1710, 3043, 3400 |
| Hpy166II | GTNNAC | 3 cut(s) | 1944, 2606, 2884 |
| Hpy8I | GTNNAC | 3 cut(s) | 1944, 2606, 2884 |
| Hpy99I | CGWCG | 4 cut(s) | 3385, 3388, 3391, 3416 |
| HpyCH4IV | ACGT | 5 cut(s) | 664, 1029, 1051, 2437, 3383 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 569, 859, 1266, 3188, 3299, 3338, 3563 |
| HpySE526I | ACGT | 5 cut(s) | 664, 1029, 1051, 2437, 3383 |
| Hsp92I | GRCGYC | 3 cut(s) | 3271, 3383, 3403 |
| HspAI | GCGC | 1 cut(s) | 1357 |
| KroI | GCCGGC | 1 cut(s) | 3457 |
| KroNI | GCCGGC | 1 cut(s) | 3459 |
| Kzo9I | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| LmnI | GCTCC | 5 cut(s) | 556, 1855, 2174, 2185, 3179 |
| Lsp1109I | GCAGC | 5 cut(s) | 1057, 1969, 2637, 2801, 3441 |
| LweI | GCATC | 9 cut(s) | 46, 126, 341, 879, 958, 1922, 2120, 2926, 3142 |
| MaeII | ACGT | 5 cut(s) | 664, 1029, 1051, 2437, 3383 |
| MalI | GATC | 7 cut(s) | 375, 383, 1569, 1866, 2597, 2623, 3336 |
| MboI | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| MfeI | CAATTG | 4 cut(s) | 285, 425, 1094, 2539 |
| MflI | RGATCY | 1 cut(s) | 2621 |
| MhlI | GDGCHC | 5 cut(s) | 1566, 2576, 3077, 3184, 3559 |
| MlsI | TGGCCA | 1 cut(s) | 2356 |
| MluI | ACGCGT | 1 cut(s) | 238 |
| MluNI | TGGCCA | 1 cut(s) | 2356 |
| MlyI | GAGTC | 5 cut(s) | 1114, 2153, 2435, 2859, 3428 |
| MmeI | TCCRAC | 8 cut(s) | 912, 921, 1116, 1824, 1932, 2007, 2700, 3372 |
| Mox20I | TGGCCA | 1 cut(s) | 2356 |
| Mph1103I | ATGCAT | 3 cut(s) | 654, 996, 3135 |
| MroNI | GCCGGC | 1 cut(s) | 3457 |
| MroXI | GAANNNNTTC | 3 cut(s) | 146, 3120, 3521 |
| MscI | TGGCCA | 1 cut(s) | 2356 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1608, 1692, 1977, 2613, 3138 |
| Msp20I | TGGCCA | 1 cut(s) | 2356 |
| MspA1I | CMGCKG | 1 cut(s) | 2699 |
| MspI | CCGG | 5 cut(s) | 2411, 2705, 2965, 3458, 3481 |
| MspR9I | CCNGG | 4 cut(s) | 2411, 2705, 3377, 3530 |
| MunI | CAATTG | 4 cut(s) | 285, 425, 1094, 2539 |
| Mva1269I | GAATGC | 3 cut(s) | 654, 686, 1330 |
| MvaI | CCWGG | 2 cut(s) | 3377, 3530 |
| MvnI | CGCG | 2 cut(s) | 240, 1357 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 569, 859, 1266, 3188, 3299, 3338, 3563 |
| NaeI | GCCGGC | 1 cut(s) | 3459 |
| NciI | CCSGG | 2 cut(s) | 2411, 2705 |
| NcoI | CCATGG | 1 cut(s) | 3438 |
| NdeII | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| NgoMIV | GCCGGC | 1 cut(s) | 3457 |
| NlaIV | GGNNCC | 4 cut(s) | 2623, 3039, 3556, 3557 |
| NmeAIII | GCCGAG | 1 cut(s) | 3217 |
| NmuCI | GTSAC | 4 cut(s) | 957, 1716, 2438, 3150 |
| NsiI | ATGCAT | 3 cut(s) | 654, 996, 3135 |
| NspI | RCATGY | 4 cut(s) | 998, 1613, 1834, 3191 |
| PaeI | GCATGC | 1 cut(s) | 998 |
| PagI | TCATGA | 1 cut(s) | 1972 |
| PaqCI | CACCTGC | 2 cut(s) | 194, 2383 |
| PceI | AGGCCT | 1 cut(s) | 3170 |
| PciI | ACATGT | 1 cut(s) | 1830 |
| PctI | GAATGC | 3 cut(s) | 654, 686, 1330 |
| PdiI | GCCGGC | 1 cut(s) | 3459 |
| PdmI | GAANNNNTTC | 3 cut(s) | 146, 3120, 3521 |
| PflFI | GACNNNGTC | 1 cut(s) | 3385 |
| PkrI | GCNGC | 5 cut(s) | 1047, 1984, 2652, 2816, 3456 |
| PleI | GAGTC | 5 cut(s) | 1114, 2153, 2435, 2859, 3428 |
| PmaCI | CACGTG | 1 cut(s) | 2438 |
| PmlI | CACGTG | 1 cut(s) | 2438 |
| PpsI | GAGTC | 5 cut(s) | 1114, 2153, 2435, 2859, 3428 |
| Ppu21I | YACGTR | 3 cut(s) | 665, 1052, 2438 |
| PpuMI | RGGWCCY | 1 cut(s) | 3037 |
| PscI | ACATGT | 1 cut(s) | 1830 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2525 |
| Psp124BI | GAGCTC | 1 cut(s) | 3184 |
| Psp5II | RGGWCCY | 1 cut(s) | 3037 |
| Psp6I | CCWGG | 2 cut(s) | 3375, 3528 |
| PspCI | CACGTG | 1 cut(s) | 2438 |
| PspFI | CCCAGC | 1 cut(s) | 3040 |
| PspGI | CCWGG | 2 cut(s) | 3375, 3528 |
| PspN4I | GGNNCC | 4 cut(s) | 2623, 3039, 3556, 3557 |
| PspOMI | GGGCCC | 1 cut(s) | 3555 |
| PspPI | GGNCC | 5 cut(s) | 529, 2702, 3037, 3555, 3556 |
| PspPPI | RGGWCCY | 1 cut(s) | 3037 |
| PstI | CTGCAG | 1 cut(s) | 3279 |
| PstNI | CAGNNNCTG | 1 cut(s) | 982 |
| PsuI | RGATCY | 1 cut(s) | 2621 |
| PsyI | GACNNNGTC | 1 cut(s) | 3385 |
| PvuII | CAGCTG | 1 cut(s) | 2699 |
| RsaI | GTAC | 7 cut(s) | 237, 663, 802, 1743, 1945, 3108, 3144 |
| RsaNI | GTAC | 7 cut(s) | 236, 662, 801, 1742, 1944, 3107, 3143 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1608, 1692, 1977, 2613, 3138 |
| SacI | GAGCTC | 1 cut(s) | 3184 |
| SatI | GCNGC | 5 cut(s) | 1046, 1983, 2651, 2815, 3455 |
| Sau3AI | GATC | 7 cut(s) | 373, 381, 1567, 1864, 2595, 2621, 3334 |
| Sau96I | GGNCC | 5 cut(s) | 529, 2702, 3037, 3555, 3556 |
| ScaI | AGTACT | 1 cut(s) | 802 |
| SchI | GAGTC | 5 cut(s) | 1114, 2153, 2435, 2859, 3428 |
| ScrFI | CCNGG | 4 cut(s) | 2411, 2705, 3377, 3530 |
| SduI | GDGCHC | 5 cut(s) | 1566, 2576, 3077, 3184, 3559 |
| SfaNI | GCATC | 9 cut(s) | 46, 126, 341, 879, 958, 1922, 2120, 2926, 3142 |
| SfcI | CTRYAG | 1 cut(s) | 3275 |
| SinI | GGWCC | 1 cut(s) | 3037 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1608, 1692, 1977, 2613, 3138 |
| SmlI | CTYRAG | 6 cut(s) | 249, 596, 1210, 1521, 1581, 2850 |
| SmoI | CTYRAG | 6 cut(s) | 249, 596, 1210, 1521, 1581, 2850 |
| SnaBI | TACGTA | 1 cut(s) | 1052 |
| SphI | GCATGC | 1 cut(s) | 998 |
| SseBI | AGGCCT | 1 cut(s) | 3170 |
| SsiI | CCGC | 5 cut(s) | 403, 2619, 3256, 3352, 3549 |
| SspI | AATATT | 1 cut(s) | 2828 |
| SstI | GAGCTC | 1 cut(s) | 3184 |
| StuI | AGGCCT | 1 cut(s) | 3170 |
| StyD4I | CCNGG | 4 cut(s) | 2409, 2703, 3375, 3528 |
| StyI | CCWWGG | 6 cut(s) | 1020, 1533, 2021, 2235, 3048, 3438 |
| TaiI | ACGT | 5 cut(s) | 667, 1032, 1054, 2440, 3386 |
| TaqI | TCGA | 8 cut(s) | 1414, 1566, 1690, 1796, 2089, 2162, 3081, 3389 |
| TatI | WGTACW | 3 cut(s) | 800, 1741, 1943 |
| TscAI | CASTG | 8 cut(s) | 628, 1090, 1428, 1483, 1687, 1816, 2208, 2571 |
| TseFI | GTSAC | 4 cut(s) | 957, 1716, 2438, 3150 |
| TseI | GCWGC | 5 cut(s) | 1045, 1982, 2650, 2814, 3454 |
| Tsp45I | GTSAC | 4 cut(s) | 957, 1716, 2438, 3150 |
| TspDTI | ATGAA | 9 cut(s) | 321, 957, 1676, 1951, 2675, 2915, 3252, 3276, 3432 |
| TspGWI | ACGGA | 1 cut(s) | 3443 |
| TspRI | CASTG | 8 cut(s) | 628, 1090, 1428, 1483, 1687, 1816, 2208, 2571 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3385 |
| VpaK11BI | GGWCC | 1 cut(s) | 3037 |
| XapI | RAATTY | 7 cut(s) | 512, 1062, 1907, 2194, 2414, 2724, 3476 |
| XbaI | TCTAGA | 3 cut(s) | 2728, 2758, 3136 |
| XceI | RCATGY | 4 cut(s) | 998, 1613, 1834, 3191 |
| XmiI | GTMKAC | 1 cut(s) | 2605 |
| XmnI | GAANNNNTTC | 3 cut(s) | 146, 3120, 3521 |
| ZraI | GACGTC | 1 cut(s) | 3384 |
| ZrmI | AGTACT | 1 cut(s) | 802 |
| Zsp2I | ATGCAT | 3 cut(s) | 654, 996, 3135 |