Rh7DG441900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003701
Physical Location & Seq
Forward (+)
62725023 .. 62726270
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG441900.1

Sequence Viewer

Length: 1071 bp
ATGCCTGCTTTCAGTTGGCCACTACTCAAGACATTAGTGTTGCTTGATTGTCAGAAAGTGGATATTTTTGCAGCCGAATTTTCAGGCCTTCAGAAAACACACTTACGCAGTTTGCATTCACCTGCAGCTAAACTGCTCACTCCGGCTAAGCAATCTTCTATTCTAATTAACGAGAAATCATTCCCCAAACTGGAAGATTTGACTTTTGGCCCGCGCCCCATGGATATTTGGTACGGTCGACCCACCTCAGCAGCGTGCTGTGAGAAAGCTGTTTTCGCTGGGATCGGTAATAGACATACAGATGGGTCCCTCCCACATTTGAGAACGTTGAGGCTGCATGGAATGGAGAAGCTTATGCGTCTCTGGGAGACTCAACCAGCTGGCCAAGATTTTCCACAGTTGGAAATTCTAGAGGTGAAGTGTTGTGGATTGAATAATGTAGAGTTGTCTTCAGTATCCTTCCAGAATCTAACAATTTTAGAAGTAACCTTTTGCTGGCGATTGCAATATTTGACCACTTATTTGGTAGCTCGAGGTTTAAGGCAACTCAAAAAACTGAAAGTTGATGAATGTAAAAGTATGAAACTAATCTTGGCAAGTGAAGGAATCGGGGAAGATGACAGTAATTGTGAGATTGTTTTCAGCCAGTTGCAACATTTGGAACTCAGTGATTTATTAAGTTTGGAATGCTTTTGCTCGAGCAATTGCACTGTGAAGGTTCCAACCTTGGAAACTTTAGAGGTAAAATGGTGCTCCATCGAGTTGAAGGTTTCCTCTGGTATACTAGAAGTTGATTCCAATATGCATCTGGATGTACAAAAGTCCCTTACAAAAGAGGCTTTCAATACCACTGAGTCTGCTTGTAGCTCGGGAAAAACTCAGAAAAAACCTGTCACAAACTCCTCTGGAGAAGCTGAACATATTGAGTTTAATGCATGGGAACTCCATGATGATAGCCATATTGAACGTTTGGAGGAAGAATTAAGGGCCAGAAAAGCAGACATCAGACGTTTGGAGGAAGAATTAAGGGCCAAAAAAGCAGAGAGGAGAGATCACAGTGCACTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

356

Amino Acids

40.24

Weight (kDa)

6.04

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 147 - 252 1.9e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccI GTMKAC 2 cut(s) 238, 781
AccII CGCG 1 cut(s) 214
AciI CCGC 1 cut(s) 212
AclI AACGTT 2 cut(s) 326, 967
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 2 cut(s) 17, 382
AcsI RAATTY 2 cut(s) 77, 405
AcuI CTGAAG 2 cut(s) 74, 435
AfaI GTAC 2 cut(s) 233, 816
AfiI CCNNNNNNNGG 2 cut(s) 190, 495
AgsI TTSAA 5 cut(s) 433, 766, 844, 965, 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 7 cut(s) 128, 269, 352, 380, 530, 867, 914
AluI AGCT 7 cut(s) 128, 269, 352, 380, 530, 867, 914
Alw21I GWGCWC 2 cut(s) 755, 1063
Alw26I GTCTC 2 cut(s) 362, 365
Alw44I GTGCAC 1 cut(s) 1059
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 3 cut(s) 531, 697, 868
AoxI GGCC 6 cut(s) 17, 85, 208, 382, 987, 1029
ApaLI GTGCAC 1 cut(s) 1059
ApeKI GCWGC 4 cut(s) 71, 125, 251, 334
ApoI RAATTY 2 cut(s) 77, 405
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 4 cut(s) 209, 306, 987, 1029
AsuHPI GGTGA 2 cut(s) 111, 427
AvaI CYCGRG 3 cut(s) 531, 697, 868
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 1063
BalI TGGCCA 2 cut(s) 19, 384
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 2 cut(s) 755, 1063
BbvCI CCTCAGC 1 cut(s) 247
BbvI GCAGC 4 cut(s) 83, 137, 263, 321
BccI CCATC 2 cut(s) 296, 764
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 362, 365
BfaI CTAG 2 cut(s) 410, 785
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 4 cut(s) 72, 126, 252, 335
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 4 cut(s) 73, 127, 253, 336
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 3 cut(s) 531, 697, 868
BmgT120I GGNCC 4 cut(s) 209, 306, 987, 1029
BmiI GGNNCC 3 cut(s) 307, 308, 720
BmsI GCATC 1 cut(s) 814
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 927
Bpu10I CCTNAGC 1 cut(s) 247
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 219, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 495
Bse1I ACTGG 2 cut(s) 195, 646
BseDI CCNNGG 2 cut(s) 219, 726
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 2 cut(s) 190, 495
BseMII CTCAG 4 cut(s) 261, 679, 843, 893
BseNI ACTGG 2 cut(s) 195, 646
BseRI GAGGAG 2 cut(s) 892, 1060
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 4 cut(s) 83, 137, 263, 321
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 6 cut(s) 19, 87, 210, 384, 989, 1031
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 755, 1063
BsiHKCI CYCGRG 3 cut(s) 531, 697, 868
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 2 cut(s) 292, 808
BslI CCNNNNNNNGG 2 cut(s) 190, 495
BsmAI GTCTC 2 cut(s) 362, 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 292, 808
BsmI GAATGC 2 cut(s) 115, 692
BsnI GGCC 6 cut(s) 19, 87, 210, 384, 989, 1031
BsoBI CYCGRG 3 cut(s) 531, 697, 868
Bsp1286I GDGCHC 2 cut(s) 755, 1063
Bsp1407I TGTACA 1 cut(s) 814
Bsp143I GATC 2 cut(s) 282, 1051
Bsp1720I GCTNAGC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 212
BspANI GGCC 6 cut(s) 19, 87, 210, 384, 989, 1031
BspCNI CTCAG 4 cut(s) 260, 678, 844, 892
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 307, 308, 720
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 814
BsrI ACTGG 2 cut(s) 195, 646
BssECI CCNNGG 2 cut(s) 219, 726
BssMI GATC 2 cut(s) 282, 1051
BssNAI GTATAC 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 219, 726
Bst1107I GTATAC 1 cut(s) 782
Bst4CI ACNGT 5 cut(s) 236, 399, 623, 712, 1058
BstAUI TGTACA 1 cut(s) 814
BstC8I GCNNGC 5 cut(s) 6, 212, 256, 382, 497
BstDEI CTNAG 5 cut(s) 147, 247, 665, 852, 879
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 817
BstFNI CGCG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 2 cut(s) 285, 1054
BstMAI GTCTC 2 cut(s) 362, 365
BstMBI GATC 2 cut(s) 282, 1051
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 275, 995, 1037
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 1063
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 83, 137, 263, 321
BstV2I GAAGAC 1 cut(s) 441
BstXI CCANNNNNNTGG 1 cut(s) 523
BstZ17I GTATAC 1 cut(s) 782
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 6 cut(s) 19, 87, 210, 384, 989, 1031
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 817
BtsIMutI CAGTG 4 cut(s) 673, 708, 849, 1063
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 5 cut(s) 6, 212, 256, 382, 497
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 209, 306, 987, 1029
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 232, 815
CviAII CATG 4 cut(s) 220, 338, 936, 947
CviQI GTAC 2 cut(s) 232, 815
DdeI CTNAG 5 cut(s) 147, 247, 665, 852, 879
DpnI GATC 2 cut(s) 284, 1053
DpnII GATC 2 cut(s) 282, 1051
EaeI YGGCCR 2 cut(s) 17, 382
Eco130I CCWWGG 2 cut(s) 219, 726
Eco147I AGGCCT 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 74, 435
Eco88I CYCGRG 3 cut(s) 531, 697, 868
EcoO109I RGGNCCY 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 219, 726
EcoT22I ATGCAT 2 cut(s) 807, 937
ErhI CCWWGG 2 cut(s) 219, 726
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 4 cut(s) 223, 341, 939, 950
FaqI GGGAC 2 cut(s) 292, 808
FatI CATG 4 cut(s) 219, 337, 935, 946
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 2 cut(s) 238, 781
Fnu4HI GCNGC 4 cut(s) 72, 126, 252, 335
FokI GGATG 1 cut(s) 824
Fsp4HI GCNGC 4 cut(s) 72, 126, 252, 335
FspBI CTAG 2 cut(s) 410, 785
GlaI GCGC 1 cut(s) 215
GluI GCNGC 4 cut(s) 72, 126, 252, 335
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 6 cut(s) 19, 87, 210, 384, 989, 1031
HapII CCGG 1 cut(s) 143
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 216
Hin1II CATG 4 cut(s) 223, 341, 939, 950
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 5 cut(s) 370, 466, 606, 794, 854
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 111, 427
Hpy166II GTNNAC 3 cut(s) 239, 782, 1061
Hpy188I TCNGA 4 cut(s) 54, 93, 882, 1007
Hpy188III TCNNGA 6 cut(s) 28, 410, 463, 809, 870, 906
Hpy8I GTNNAC 3 cut(s) 239, 782, 1061
HpyAV CCTTC 5 cut(s) 98, 469, 596, 709, 760
HpyCH4III ACNGT 5 cut(s) 236, 399, 623, 712, 1058
HpyCH4IV ACGT 3 cut(s) 326, 967, 1009
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 995, 1037
HpyF3I CTNAG 5 cut(s) 147, 247, 665, 852, 879
HpySE526I ACGT 3 cut(s) 326, 967, 1009
Hsp92II CATG 4 cut(s) 223, 341, 939, 950
HspAI GCGC 1 cut(s) 214
KflI GGGWCCC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 282, 1051
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 4 cut(s) 83, 137, 263, 321
LweI GCATC 1 cut(s) 814
MaeI CTAG 2 cut(s) 410, 785
MaeII ACGT 3 cut(s) 326, 967, 1009
MaeIII GTNAC 2 cut(s) 484, 892
MalI GATC 2 cut(s) 284, 1053
MboI GATC 2 cut(s) 282, 1051
MboII GAAGA 6 cut(s) 147, 206, 441, 626, 989, 1031
MfeI CAATTG 1 cut(s) 703
MhlI GDGCHC 2 cut(s) 755, 1063
MlsI TGGCCA 2 cut(s) 19, 384
MluCI AATT 8 cut(s) 77, 165, 405, 474, 625, 703, 980, 1022
MluNI TGGCCA 2 cut(s) 19, 384
MlyI GAGTC 2 cut(s) 364, 863
MmeI TCCRAC 2 cut(s) 381, 746
Mox20I TGGCCA 2 cut(s) 19, 384
Mph1103I ATGCAT 2 cut(s) 807, 937
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 2 cut(s) 19, 384
MseI TTAA 6 cut(s) 168, 539, 677, 930, 983, 1025
MslI CAYNNNNRTG 2 cut(s) 300, 810
Msp20I TGGCCA 2 cut(s) 19, 384
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 703
Mva1269I GAATGC 2 cut(s) 115, 692
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 275, 995, 1037
NcoI CCATGG 1 cut(s) 219
NdeII GATC 2 cut(s) 282, 1051
NlaIII CATG 4 cut(s) 223, 341, 939, 950
NlaIV GGNNCC 3 cut(s) 307, 308, 720
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 2 cut(s) 807, 937
PaeR7I CTCGAG 2 cut(s) 531, 697
PaqCI CACCTGC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 87
PctI GAATGC 2 cut(s) 115, 692
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 466, 606, 794
PkrI GCNGC 4 cut(s) 73, 127, 253, 336
PleI GAGTC 2 cut(s) 364, 862
PpsI GAGTC 2 cut(s) 364, 862
PpuMI RGGWCCY 1 cut(s) 306
Psp1406I AACGTT 2 cut(s) 326, 967
Psp5II RGGWCCY 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 307, 308, 720
PspPI GGNCC 4 cut(s) 209, 306, 987, 1029
PspPPI RGGWCCY 1 cut(s) 306
PspXI VCTCGAGB 2 cut(s) 531, 697
PstI CTGCAG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 233, 816
RsaNI GTAC 2 cut(s) 232, 815
RseI CAYNNNNRTG 2 cut(s) 300, 810
SalI GTCGAC 1 cut(s) 237
SaqAI TTAA 6 cut(s) 168, 539, 677, 930, 983, 1025
SatI GCNGC 4 cut(s) 72, 126, 252, 335
Sau3AI GATC 2 cut(s) 282, 1051
Sau96I GGNCC 4 cut(s) 209, 306, 987, 1029
SchI GAGTC 2 cut(s) 364, 863
SduI GDGCHC 2 cut(s) 755, 1063
SfaNI GCATC 1 cut(s) 814
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 2 cut(s) 531, 697
SinI GGWCC 1 cut(s) 306
SlaI CTCGAG 2 cut(s) 531, 697
SmiMI CAYNNNNRTG 2 cut(s) 300, 810
SmlI CTYRAG 3 cut(s) 26, 531, 697
SmoI CTYRAG 3 cut(s) 26, 531, 697
Sse9I AATT 8 cut(s) 77, 165, 405, 474, 625, 703, 980, 1022
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 1 cut(s) 212
SspI AATATT 1 cut(s) 509
SspMI CTAG 2 cut(s) 410, 785
StuI AGGCCT 1 cut(s) 87
StyI CCWWGG 2 cut(s) 219, 726
TaaI ACNGT 5 cut(s) 236, 399, 623, 712, 1058
TaiI ACGT 3 cut(s) 329, 970, 1012
TaqI TCGA 4 cut(s) 238, 532, 698, 759
TasI AATT 8 cut(s) 77, 165, 405, 474, 625, 703, 980, 1022
TatI WGTACW 1 cut(s) 814
TfiI GAWTC 3 cut(s) 466, 606, 794
Tru1I TTAA 6 cut(s) 168, 539, 677, 930, 983, 1025
Tru9I TTAA 6 cut(s) 168, 539, 677, 930, 983, 1025
TscAI CASTG 4 cut(s) 673, 715, 856, 1063
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 4 cut(s) 71, 125, 251, 334
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 2 cut(s) 582, 596
TspRI CASTG 4 cut(s) 673, 715, 856, 1063
VneI GTGCAC 1 cut(s) 1059
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 2 cut(s) 77, 405
XbaI TCTAGA 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XhoI CTCGAG 2 cut(s) 531, 697
XmiI GTMKAC 2 cut(s) 238, 781
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 410, 785
Zsp2I ATGCAT 2 cut(s) 807, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.