Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000144.1

Orthogroup ID

OG0004486

Physical Location & Seq

Genomic Coordinates Forward (+)

210293 .. 212145

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggggtcgagagctattgcatgttgcattctgttgtcattgttctcagtagctttagctgaatatgtcgatgtcagggttcgaggagtggtttcgatagctagcacagatgacaatttcatatgtgcaaccctggattggtggccaactgataaatgtgattacaatcaatgtccttggggaaaagctggaatttttaatctggatttgaagaacaagaccttgatcaatgcagtaaaggcattcaatacaataaggatcagaattggaggttcattgcaagaccaaattatttataattttggttatggagtgaaagactgcaaccaaatcgtgaaagatggttctgggcctttcttgttccgtggcggttgtcttcagccgaaaagatgggatgagatccatgagttcttcaaccaaacacaagccaaactcttgtttggattgaatgcccttcatgggaagaaagcggaccctaaagacaagattctttgggttggtgattgggacgcaaaaaacgctcgtgatctcatggagtacaccatctcaaagggttaccctgttgagtcatatgagcttggaaacgagttatgtgggagtggggtaggtgcaagaatagaagctgaacaatatgccaaagacatgaaaaagctcaaacaacttgtgacagagttgttcccagatgattgtggtttctccaatgaccgagcttcttcgaggatgaccgaactcagaatcgaggatggggcacaactgaagagctatttgatccccaaacctagagtgaaatctgagagaagcaaaacgaaaagcgaaatcaaaaccagagcaagttccgccaggaaaagattagtatctctgattgccctggctttgaacctggatgagattttttttgagaaagttggggatctgaatggccacttttgcaattcttcaccttttgcaccatccaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

319

Amino Acids

35.75

Weight (kDa)

8.7

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	24 - 227	4.4e-88	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61250 AT5G61250 AT5G61250
fragaria_vesca	FvH4_4g30431
malus_domestica	MD16G1063800.v1.1
prunus_persica	Prupe.1G282800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148001 RchiOBHm_Chr4g0438741 RchiOBHm_Chr5g0048021 RchiOBHm_Chr6g0269401
rosa_laevigata	RLG00000006333
rosa_multiflora	Rmu_co8288403.1_g000001 Rmu_co8425743.1_g000002 Rmu_sc0000144.1_g000048 Rmu_sc0002505.1_g000007 Rmu_sc0003368.1_g000008 Rmu_sc0013774.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379770
rosa_rugosa	Rorug04G0312900
rosa_samantha	Rh1AG210500 Rh2AG598400 Rh4AG363500 Rh4BG374900 Rh4BG375000 Rh4CG389100 Rh4DG369300 Rh5BG325700 Rh5BG370100 Rh5DG336800
rosa_wichuraiana	Rw0G007200 Rw0G016750 Rw1G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AciI	CCGC	3 cut(s)	369, 470, 837
AclWI	GGATC	4 cut(s)	266, 394, 763, 918
AcoI	YGGCCR	2 cut(s)	143, 919
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	2 cut(s)	362, 776
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	138, 459
AgsI	TTSAA	5 cut(s)	211, 247, 415, 448, 877
AjnI	CCWGG	5 cut(s)	132, 839, 867, 879, 953
AlwI	GGATC	4 cut(s)	266, 394, 763, 918
AoxI	GGCC	3 cut(s)	143, 350, 919
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	350, 472
AsuHPI	GGTGA	2 cut(s)	512, 930
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	751
BalI	TGGCCA	2 cut(s)	145, 921
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	368
BccI	CCATC	5 cut(s)	335, 384, 551, 737, 958
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	5 cut(s)	134, 841, 869, 881, 955
BclI	TGATCA	1 cut(s)	225
BfaI	CTAG	2 cut(s)	102, 780
Bme1390I	CCNGG	5 cut(s)	134, 841, 869, 881, 955
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	350, 472
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	5 cut(s)	134, 841, 869, 881, 955
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	368
BsaBI	GATNNNNATC	2 cut(s)	165, 853
BsaJI	CCNNGG	4 cut(s)	132, 176, 364, 867
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 459
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	2 cut(s)	165, 853
BseBI	CCWGG	5 cut(s)	134, 841, 869, 881, 955
BseDI	CCNNGG	4 cut(s)	132, 176, 364, 867
BseGI	GGATG	5 cut(s)	400, 726, 748, 889, 950
BseJI	GATNNNNATC	2 cut(s)	165, 853
BseLI	CCNNNNNNNGG	2 cut(s)	138, 459
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	60, 745, 783
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	751
BshFI	GGCC	3 cut(s)	145, 352, 921
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	138, 459
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	3 cut(s)	27, 242, 454
BsnI	GGCC	3 cut(s)	145, 352, 921
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
BspACI	CCGC	3 cut(s)	369, 470, 837
BspANI	GGCC	3 cut(s)	145, 352, 921
BspCNI	CTCAG	3 cut(s)	59, 744, 784
BspLI	GGNNCC	1 cut(s)	474
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	4 cut(s)	266, 394, 763, 918
BspQI	GCTCTTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	132, 176, 364, 867
BssMI	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	5 cut(s)	134, 841, 869, 881, 955
Bst6I	CTCTTC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	46, 731, 792
BstDSI	CCRYGG	1 cut(s)	364
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	5 cut(s)	400, 726, 748, 889, 950
BstKTI	GATC	6 cut(s)	228, 261, 402, 529, 771, 913
BstMBI	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 518, 836, 927
BstNI	CCWGG	5 cut(s)	134, 841, 869, 881, 955
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	5 cut(s)	132, 839, 867, 879, 953
BstSLI	GKGCMC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	399, 910
BstYI	RGATCY	2 cut(s)	399, 910
BsuRI	GGCC	3 cut(s)	145, 352, 921
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	5 cut(s)	400, 726, 748, 889, 950
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	350, 472
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	5 cut(s)	21, 404, 458, 532, 643
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	46, 731, 792
DpnI	GATC	6 cut(s)	227, 260, 401, 528, 770, 912
DpnII	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
EaeI	YGGCCR	2 cut(s)	143, 919
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
EciI	GGCGGA	1 cut(s)	826
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	362, 776
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	5 cut(s)	132, 839, 867, 879, 953
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	5 cut(s)	24, 407, 461, 535, 646
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	5 cut(s)	20, 403, 457, 531, 642
FauNDI	CATATG	2 cut(s)	122, 571
FbaI	TGATCA	1 cut(s)	225
FokI	GGATG	5 cut(s)	407, 733, 755, 896, 937
FspBI	CTAG	2 cut(s)	102, 780
HaeIII	GGCC	3 cut(s)	145, 352, 921
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	5 cut(s)	24, 407, 461, 535, 646
HinfI	GANTC	3 cut(s)	487, 566, 735
HphI	GGTGA	2 cut(s)	512, 930
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	5 cut(s)	263, 734, 793, 861, 915
Hpy188III	TCNNGA	4 cut(s)	9, 203, 334, 524
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	1 cut(s)	464
HpyCH4V	TGCA	9 cut(s)	20, 27, 128, 233, 280, 324, 611, 930, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 518, 836, 927
HpyF3I	CTNAG	3 cut(s)	46, 731, 792
Hsp92II	CATG	5 cut(s)	24, 407, 461, 535, 646
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
LguI	GCTCTTC	1 cut(s)	752
MaeI	CTAG	2 cut(s)	102, 780
MaeIII	GTNAC	2 cut(s)	554, 664
MalI	GATC	6 cut(s)	227, 260, 401, 528, 770, 912
MboI	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
MboII	GAAGA	7 cut(s)	223, 368, 403, 475, 705, 769, 927
MflI	RGATCY	2 cut(s)	399, 910
MhlI	GDGCHC	1 cut(s)	751
MlsI	TGGCCA	2 cut(s)	145, 921
MluCI	AATT	6 cut(s)	115, 192, 264, 288, 298, 931
MluNI	TGGCCA	2 cut(s)	145, 921
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	4 cut(s)	77, 263, 711, 733
Mox20I	TGGCCA	2 cut(s)	145, 921
MscI	TGGCCA	2 cut(s)	145, 921
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	955
Msp20I	TGGCCA	2 cut(s)	145, 921
MspR9I	CCNGG	5 cut(s)	134, 841, 869, 881, 955
Mva1269I	GAATGC	3 cut(s)	27, 242, 454
MvaI	CCWGG	5 cut(s)	134, 841, 869, 881, 955
MwoI	GCNNNNNNNGC	4 cut(s)	239, 518, 836, 927
NdeI	CATATG	2 cut(s)	122, 571
NdeII	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	24, 407, 461, 535, 646
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	752
PctI	GAATGC	3 cut(s)	27, 242, 454
PfeI	GAWTC	2 cut(s)	487, 735
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PsiI	TTATAA	1 cut(s)	297
Psp6I	CCWGG	5 cut(s)	132, 839, 867, 879, 953
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	5 cut(s)	132, 839, 867, 879, 953
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	2 cut(s)	350, 472
PsuI	RGATCY	2 cut(s)	399, 910
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	955
SapI	GCTCTTC	1 cut(s)	752
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	6 cut(s)	225, 258, 399, 526, 768, 910
Sau96I	GGNCC	2 cut(s)	350, 472
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	5 cut(s)	134, 841, 869, 881, 955
SduI	GDGCHC	1 cut(s)	751
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	955
Sse9I	AATT	6 cut(s)	115, 192, 264, 288, 298, 931
SsiI	CCGC	3 cut(s)	369, 470, 837
SspMI	CTAG	2 cut(s)	102, 780
StyD4I	CCNGG	5 cut(s)	132, 839, 867, 879, 953
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	6 cut(s)	8, 69, 82, 95, 716, 738
TaqII	GACCGA	2 cut(s)	720, 740
TasI	AATT	6 cut(s)	115, 192, 264, 288, 298, 931
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	487, 735
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	664
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	4 cut(s)	109, 264, 446, 659
TspGWI	ACGGA	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	102, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.