Rmu_sc0000193.1_g000009

Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000193.1
OG0004879
Physical Location & Seq
Reverse (-)
44513 .. 48903
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
atgcacaagaccgacatctcattcgcagtgaacttgttagctcgacatagttctgctccaacacgccgccattggattggtgtgaagacaatctttcaatacctaagaggtacgattgatatgggcctattttatccctacagagagaaaaggaatgacaaaaggatgggatcagaccaaattggctcaagtgccaccgtccaaaatgccatgacctgcaaaattgtcgccgccgccaccaagggtggccggcctcaccctcatgcacttcatcaaaacgacaatgatgttttgatgggttttgctaatgcagggtacctctctgaccctcacaaagatttggttgtggtgagtgccggagatgataagaagatatcgttgtggcataagaatgggaagagcttggggactattccggtggccgggacagacagtggtgacaacattgaggttgagttaatcaagtgttttcaattatctttacaaccgcatatggagtctgttgattttgacaaagtcttgttctttggcttcctacttacaatttgcttggcatggaatctatcactcagtttgaattccaacagtgatactaggcagaaaggcagaaaaacatacatctatttatgccattcaggtcaaactgagaaagacatggctccggtcaccggaagttcgattcaccggtcgggctctcggcctcagttagacctcagcaaagctgctattcagggaacttttgaagagagggaccatacaattctgttgcctaatcagtctgatcacttgtctcatctggctttggacattggaggatctctcatcaagttggtgtatttttctagacacgaagaccaatcaattgatgacaaaaggaagaaaactttgaaggagagactgggtatttccaatggtagtcgaagaagctacgctgttcttggtggaaggcttcattttgtgaagtttgagacgaccaagattaatgagtgcttagcttcatttattctaaacaacttcaccgtggaggtattctcctcttgctgtcttttgcccctgttttaa

Protein Analysis

353

Amino Acids

39.35

Weight (kDa)

9.06

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fumble PF03630 265 - 334 4.7e-11 Fumble
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 224
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AciI CCGC 4 cut(s) 67, 231, 234, 488
AclWI GGATC 2 cut(s) 178, 823
AcoI YGGCCR 2 cut(s) 247, 420
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 2 cut(s) 112, 317
AfiI CCNNNNNNNGG 2 cut(s) 422, 668
AgeI ACCGGT 1 cut(s) 684
AgsI TTSAA 5 cut(s) 98, 473, 577, 743, 889
AluBI AGCT 5 cut(s) 41, 402, 722, 927, 995
AluI AGCT 5 cut(s) 41, 402, 722, 927, 995
Alw26I GTCTC 3 cut(s) 795, 889, 962
AlwI GGATC 2 cut(s) 178, 823
AoxI GGCC 5 cut(s) 124, 247, 251, 420, 698
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 1 cut(s) 577
ArsI GACNNNNNNTTYG 1 cut(s) 37
AseI ATTAAT 1 cut(s) 981
AsiGI ACCGGT 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 124, 751
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 6 cut(s) 248, 361, 449, 658, 674, 1009
AvaII GGWCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 695
BbsI GAAGAC 2 cut(s) 92, 858
BbvCI CCTCAGC 1 cut(s) 713
BbvI GCAGC 1 cut(s) 709
BccI CCATC 2 cut(s) 160, 289
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BclI TGATCA 1 cut(s) 781
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 3 cut(s) 795, 889, 962
BfaI CTAG 2 cut(s) 594, 843
BfmI CTRYAG 1 cut(s) 139
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 4 cut(s) 67, 231, 234, 723
BlpI GCTNAGC 1 cut(s) 991
BlsI GCNGC 4 cut(s) 68, 232, 235, 724
Bme1390I CCNGG 1 cut(s) 424
Bme18I GGWCC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 124, 751
BmiI GGNNCC 3 cut(s) 317, 660, 752
BmrFI CCNGG 1 cut(s) 424
BmrI ACTGGG 1 cut(s) 908
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 2 cut(s) 92, 858
BplI GAGNNNNNCTC 4 cut(s) 804, 836, 1016, 1048
Bpu10I CCTNAGC 1 cut(s) 713
Bpu1102I GCTNAGC 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 240, 1020
BsaWI WCCGGW 4 cut(s) 415, 661, 668, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 668
Bse118I RCCGGY 2 cut(s) 249, 684
Bse1I ACTGG 1 cut(s) 903
BseDI CCNNGG 2 cut(s) 240, 1020
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 422, 668
BseMII CTCAG 4 cut(s) 583, 636, 716, 727
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 1 cut(s) 1024
BseXI GCAGC 1 cut(s) 709
Bsh1285I CGRYCG 1 cut(s) 689
BshFI GGCC 5 cut(s) 126, 249, 253, 422, 700
BshNI GGYRCC 1 cut(s) 315
BshTI ACCGGT 1 cut(s) 684
BsiEI CGRYCG 1 cut(s) 689
BsiSI CCGG 7 cut(s) 250, 357, 416, 423, 662, 669, 685
BslFI GGGAC 3 cut(s) 421, 439, 764
BslI CCNNNNNNNGG 2 cut(s) 422, 668
BsmAI GTCTC 3 cut(s) 795, 889, 962
BsmBI CGTCTC 1 cut(s) 962
BsmFI GGGAC 3 cut(s) 421, 439, 764
BsnI GGCC 5 cut(s) 126, 249, 253, 422, 700
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 3 cut(s) 170, 781, 815
Bsp1720I GCTNAGC 1 cut(s) 991
BspACI CCGC 4 cut(s) 67, 231, 234, 488
BspANI GGCC 5 cut(s) 126, 249, 253, 422, 700
BspCNI CTCAG 4 cut(s) 582, 637, 715, 726
BspLI GGNNCC 3 cut(s) 317, 660, 752
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 2 cut(s) 178, 823
BspQI GCTCTTC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 249, 684
BsrI ACTGG 1 cut(s) 903
BssAI RCCGGY 2 cut(s) 249, 684
BssECI CCNNGG 2 cut(s) 240, 1020
BssMI GATC 3 cut(s) 170, 781, 815
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 4 cut(s) 199, 434, 587, 1021
Bst6I CTCTTC 2 cut(s) 392, 738
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 6 cut(s) 104, 569, 645, 702, 713, 991
BstDSI CCRYGG 1 cut(s) 1020
BstEII GGTNACC 1 cut(s) 664
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 3 cut(s) 173, 784, 818
BstMAI GTCTC 3 cut(s) 795, 889, 962
BstMBI GATC 3 cut(s) 170, 781, 815
BstMCI CGRYCG 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 709
BstV2I GAAGAC 2 cut(s) 92, 858
BstX2I RGATCY 1 cut(s) 815
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 1 cut(s) 815
BsuRI GGCC 5 cut(s) 126, 249, 253, 422, 700
BtgI CCRYGG 1 cut(s) 1020
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 3 cut(s) 33, 439, 592
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 251
Cfr10I RCCGGY 2 cut(s) 249, 684
Cfr13I GGNCC 2 cut(s) 124, 751
Csp6I GTAC 2 cut(s) 111, 316
CspAI ACCGGT 1 cut(s) 684
CviAII CATG 4 cut(s) 211, 263, 555, 655
CviQI GTAC 2 cut(s) 111, 316
DdeI CTNAG 6 cut(s) 104, 569, 645, 702, 713, 991
DpnI GATC 3 cut(s) 172, 783, 817
DpnII GATC 3 cut(s) 170, 781, 815
EaeI YGGCCR 2 cut(s) 247, 420
Eam1104I CTCTTC 2 cut(s) 392, 738
EarI CTCTTC 2 cut(s) 392, 738
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 695
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 751
Eco91I GGTNACC 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 577
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 695
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 962
FaeI CATG 4 cut(s) 214, 266, 558, 658
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 3 cut(s) 421, 439, 764
FatI CATG 4 cut(s) 210, 262, 554, 654
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 781
Fnu4HI GCNGC 4 cut(s) 67, 231, 234, 723
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 695
FseI GGCCGGCC 1 cut(s) 253
Fsp4HI GCNGC 4 cut(s) 67, 231, 234, 723
FspBI CTAG 2 cut(s) 594, 843
GluI GCNGC 4 cut(s) 67, 231, 234, 723
HaeIII GGCC 5 cut(s) 126, 249, 253, 422, 700
HapII CCGG 7 cut(s) 250, 357, 416, 423, 662, 669, 685
Hin1II CATG 4 cut(s) 214, 266, 558, 658
HinfI GANTC 3 cut(s) 497, 559, 679
HpaII CCGG 7 cut(s) 250, 357, 416, 423, 662, 669, 685
HphI GGTGA 6 cut(s) 248, 361, 449, 658, 674, 1009
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 175, 325, 781
Hpy188III TCNNGA 1 cut(s) 843
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 883, 939
HpyCH4III ACNGT 4 cut(s) 199, 434, 587, 1021
HpyCH4V TGCA 4 cut(s) 4, 219, 266, 311
HpyF3I CTNAG 6 cut(s) 104, 569, 645, 702, 713, 991
Hsp92II CATG 4 cut(s) 214, 266, 558, 658
KpnI GGTACC 1 cut(s) 319
KroI GCCGGC 1 cut(s) 249
KroNI GCCGGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 3 cut(s) 170, 781, 815
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 2 cut(s) 61, 664
Lsp1109I GCAGC 1 cut(s) 709
MaeI CTAG 2 cut(s) 594, 843
MaeIII GTNAC 2 cut(s) 437, 664
MalI GATC 3 cut(s) 172, 783, 817
MboI GATC 3 cut(s) 170, 781, 815
MboII GAAGA 7 cut(s) 97, 382, 409, 755, 863, 889, 933
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 1 cut(s) 695
MluCI AATT 7 cut(s) 180, 222, 473, 543, 577, 759, 861
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 2 cut(s) 83, 606
MroNI GCCGGC 1 cut(s) 249
MseI TTAA 3 cut(s) 458, 981, 1060
MslI CAYNNNNRTG 2 cut(s) 261, 390
MspI CCGG 7 cut(s) 250, 357, 416, 423, 662, 669, 685
MspR9I CCNGG 1 cut(s) 424
MunI CAATTG 1 cut(s) 861
NaeI GCCGGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 424
NdeI CATATG 1 cut(s) 492
NdeII GATC 3 cut(s) 170, 781, 815
NgoMIV GCCGGC 1 cut(s) 249
NlaIII CATG 4 cut(s) 214, 266, 558, 658
NlaIV GGNNCC 3 cut(s) 317, 660, 752
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 2 cut(s) 437, 664
PciSI GCTCTTC 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 559, 679
PflFI GACNNNGTC 1 cut(s) 515
PinAI ACCGGT 1 cut(s) 684
PkrI GCNGC 4 cut(s) 68, 232, 235, 724
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 981
PspEI GGTNACC 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 317, 660, 752
PspPI GGNCC 2 cut(s) 124, 751
PsuI RGATCY 1 cut(s) 815
PsyI GACNNNGTC 1 cut(s) 515
RigI GGCCGGCC 1 cut(s) 253
RsaI GTAC 2 cut(s) 112, 317
RsaNI GTAC 2 cut(s) 111, 316
RseI CAYNNNNRTG 2 cut(s) 261, 390
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 3 cut(s) 458, 981, 1060
SatI GCNGC 4 cut(s) 67, 231, 234, 723
Sau3AI GATC 3 cut(s) 170, 781, 815
Sau96I GGNCC 2 cut(s) 124, 751
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 1 cut(s) 695
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 1 cut(s) 751
SmiMI CAYNNNNRTG 2 cut(s) 261, 390
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 7 cut(s) 180, 222, 473, 543, 577, 759, 861
SsiI CCGC 4 cut(s) 67, 231, 234, 488
SspMI CTAG 2 cut(s) 594, 843
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 4 cut(s) 199, 434, 587, 1021
TaqI TCGA 3 cut(s) 43, 677, 919
TaqII GACCGA 1 cut(s) 26
TasI AATT 7 cut(s) 180, 222, 473, 543, 577, 759, 861
TauI GCSGC 3 cut(s) 69, 233, 236
TfiI GAWTC 2 cut(s) 559, 679
Tru1I TTAA 3 cut(s) 458, 981, 1060
Tru9I TTAA 3 cut(s) 458, 981, 1060
TscAI CASTG 3 cut(s) 33, 439, 592
TseFI GTSAC 2 cut(s) 437, 664
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 2 cut(s) 437, 664
TspDTI ATGAA 3 cut(s) 260, 941, 987
TspRI CASTG 3 cut(s) 33, 439, 592
Tth111I GACNNNGTC 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 751
VspI ATTAAT 1 cut(s) 981
XapI RAATTY 1 cut(s) 577
XbaI TCTAGA 1 cut(s) 842
XspI CTAG 2 cut(s) 594, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.