Rmu_sc0000545.1_g000001
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000545.1
OG0002891
Physical Location & Seq
Reverse (-)
1933 .. 2595
663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
atgcagatcaagaagccgagccagggtcgccaaaagattgcaatcaccaaaattcccaacaggagtaatttacaagtcacattctcgaaacgttgtgcaggactgttcaagaaggctagtgagctctgcacactttgtggagttgagattgcaatagtagtcttttctccttccaacaaacccttctctttcggccatcctagcattaagaccctcatcggccgctttctttctccaagcccttcatcatttcccagtagtactcaacaagctctgtaccccaggaaggctagtgttgaacatgagctcaacatgcagctaaccgggactcaaggccgactggaggctgagaaaaagcgaggagaagagcttgacaagatgagtaaagacagccagcgatcgagtcattgttggtgggagaagccaattgaggaacttggattggatgggctccagatgttgaaggctacaatggaggagctcaagaagaatgtgatggaacaaatccacaaaataaatggtcctgccaaattttcagtaccattctctgtgatgaatcttgatcatcatctttctgagagaaagtttgctgagattaatggatgtcatggttccatgatcccttcttgtgcctatggctatggacatggttcttttttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

220

Amino Acids

24.6

Weight (kDa)

9.39

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 17 - 64 1.5e-24 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 223
AclI AACGTT 1 cut(s) 91
AclWI GGATC 1 cut(s) 613
AcoI YGGCCR 2 cut(s) 193, 220
AcsI RAATTY 2 cut(s) 51, 530
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 3 cut(s) 262, 278, 540
AfiI CCNNNNNNNGG 3 cut(s) 23, 286, 343
AgsI TTSAA 3 cut(s) 109, 299, 463
AjnI CCWGG 2 cut(s) 21, 281
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 6 cut(s) 124, 272, 307, 319, 370, 481
AluI AGCT 6 cut(s) 124, 272, 307, 319, 370, 481
Alw21I GWGCWC 3 cut(s) 126, 309, 483
AlwI GGATC 1 cut(s) 613
AoxI GGCC 3 cut(s) 193, 220, 334
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 2 cut(s) 51, 530
AseI ATTAAT 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 521
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 521
BanII GRGCYC 4 cut(s) 126, 309, 453, 483
Bbv12I GWGCWC 3 cut(s) 126, 309, 483
BbvI GCAGC 1 cut(s) 328
BccI CCATC 3 cut(s) 204, 440, 490
BciT130I CCWGG 2 cut(s) 23, 283
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 1 cut(s) 325
BfaI CTAG 3 cut(s) 117, 201, 291
BisI GCNGC 2 cut(s) 223, 317
BlsI GCNGC 2 cut(s) 224, 318
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 3 cut(s) 23, 283, 325
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 452, 613
BmrFI CCNGG 3 cut(s) 23, 283, 325
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 362, 437
BpuEI CTTGAG 2 cut(s) 315, 467
BpuMI CCSGG 1 cut(s) 325
BsaBI GATNNNNATC 2 cut(s) 41, 567
BsaJI CCNNGG 2 cut(s) 22, 281
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 286, 343
Bse1I ACTGG 2 cut(s) 255, 345
Bse8I GATNNNNATC 2 cut(s) 41, 567
BseBI CCWGG 2 cut(s) 23, 283
BseDI CCNNGG 2 cut(s) 22, 281
BseGI GGATG 3 cut(s) 196, 451, 608
BseJI GATNNNNATC 2 cut(s) 41, 567
BseLI CCNNNNNNNGG 3 cut(s) 23, 286, 343
BseMII CTCAG 3 cut(s) 339, 567, 582
BseNI ACTGG 2 cut(s) 255, 345
BseRI GAGGAG 2 cut(s) 375, 491
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 328
BsgI GTGCAG 2 cut(s) 112, 117
Bsh1285I CGRYCG 2 cut(s) 223, 401
BshFI GGCC 3 cut(s) 195, 222, 336
BsiEI CGRYCG 2 cut(s) 223, 401
BsiHKAI GWGCWC 3 cut(s) 126, 309, 483
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 3 cut(s) 23, 286, 343
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 3 cut(s) 195, 222, 336
Bsp1286I GDGCHC 4 cut(s) 126, 309, 453, 483
Bsp143I GATC 4 cut(s) 6, 398, 562, 618
BspACI CCGC 1 cut(s) 223
BspANI GGCC 3 cut(s) 195, 222, 336
BspCNI CTCAG 3 cut(s) 340, 568, 583
BspLI GGNNCC 2 cut(s) 452, 613
BspPI GGATC 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 360
BsrI ACTGG 2 cut(s) 255, 345
BssECI CCNNGG 2 cut(s) 22, 281
BssMI GATC 4 cut(s) 6, 398, 562, 618
Bst2UI CCWGG 2 cut(s) 23, 283
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 348, 576, 591
BstF5I GGATG 3 cut(s) 196, 451, 608
BstKTI GATC 4 cut(s) 9, 401, 565, 621
BstMBI GATC 4 cut(s) 6, 398, 562, 618
BstMCI CGRYCG 2 cut(s) 223, 401
BstMWI GCNNNNNNNGC 3 cut(s) 27, 201, 313
BstNI CCWGG 2 cut(s) 23, 283
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 3 cut(s) 21, 281, 323
BstV1I GCAGC 1 cut(s) 328
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 3 cut(s) 195, 222, 336
BtsCI GGATG 3 cut(s) 196, 451, 608
Cac8I GCNNGC 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 261, 277, 539
CviAII CATG 5 cut(s) 302, 313, 608, 616, 647
CviQI GTAC 3 cut(s) 261, 277, 539
DdeI CTNAG 3 cut(s) 348, 576, 591
DpnI GATC 4 cut(s) 8, 400, 564, 620
DpnII GATC 4 cut(s) 6, 398, 562, 618
DraIII CACNNNGTG 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 193, 220
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Ecl136II GAGCTC 3 cut(s) 124, 307, 481
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 4 cut(s) 126, 309, 453, 483
Eco47I GGWCC 1 cut(s) 521
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 3 cut(s) 124, 307, 481
EcoICRI GAGCTC 3 cut(s) 124, 307, 481
EcoRII CCWGG 2 cut(s) 21, 281
EcoT38I GRGCYC 4 cut(s) 126, 309, 453, 483
FaeI CATG 5 cut(s) 305, 316, 611, 619, 650
FaiI YATR 7 cut(s) 303, 314, 609, 617, 636, 642, 648
FaqI GGGAC 1 cut(s) 340
FatI CATG 5 cut(s) 301, 312, 607, 615, 646
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 2 cut(s) 223, 317
FokI GGATG 3 cut(s) 183, 458, 615
FriOI GRGCYC 4 cut(s) 126, 309, 453, 483
Fsp4HI GCNGC 2 cut(s) 223, 317
FspBI CTAG 3 cut(s) 117, 201, 291
GluI GCNGC 2 cut(s) 223, 317
GsuI CTGGAG 2 cut(s) 362, 437
HaeIII GGCC 3 cut(s) 195, 222, 336
HapII CCGG 1 cut(s) 324
Hin1II CATG 5 cut(s) 305, 316, 611, 619, 650
HinfI GANTC 3 cut(s) 328, 403, 556
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 6 cut(s) 10, 85, 109, 454, 484, 560
HpyAV CCTTC 7 cut(s) 106, 180, 193, 252, 280, 457, 633
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 6 cut(s) 4, 41, 98, 129, 152, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 201, 313
HpyF3I CTNAG 3 cut(s) 348, 576, 591
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 5 cut(s) 305, 316, 611, 619, 650
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 6, 398, 562, 618
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 456, 478
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 3 cut(s) 117, 201, 291
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 76
MalI GATC 4 cut(s) 8, 400, 564, 620
MboI GATC 4 cut(s) 6, 398, 562, 618
MboII GAAGA 2 cut(s) 377, 499
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 4 cut(s) 126, 309, 453, 483
MluCI AATT 4 cut(s) 51, 67, 426, 530
MlyI GAGTC 2 cut(s) 322, 412
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 224, 337, 353, 424, 469
MseI TTAA 2 cut(s) 207, 597
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 3 cut(s) 23, 283, 325
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 2 cut(s) 23, 283
MwoI GCNNNNNNNGC 3 cut(s) 27, 201, 313
NciI CCSGG 1 cut(s) 325
NdeII GATC 4 cut(s) 6, 398, 562, 618
NlaIII CATG 5 cut(s) 305, 316, 611, 619, 650
NlaIV GGNNCC 2 cut(s) 452, 613
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 556
PkrI GCNGC 2 cut(s) 224, 318
Ple19I CGATCG 1 cut(s) 401
PleI GAGTC 2 cut(s) 322, 411
PpsI GAGTC 2 cut(s) 322, 411
PshBI ATTAAT 1 cut(s) 597
Psp124BI GAGCTC 3 cut(s) 126, 309, 483
Psp1406I AACGTT 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 21, 281
PspGI CCWGG 2 cut(s) 21, 281
PspN4I GGNNCC 2 cut(s) 452, 613
PspPI GGNCC 1 cut(s) 521
PvuI CGATCG 1 cut(s) 401
RsaI GTAC 3 cut(s) 262, 278, 540
RsaNI GTAC 3 cut(s) 261, 277, 539
SacI GAGCTC 3 cut(s) 126, 309, 483
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 207, 597
SatI GCNGC 2 cut(s) 223, 317
Sau3AI GATC 4 cut(s) 6, 398, 562, 618
Sau96I GGNCC 1 cut(s) 521
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 2 cut(s) 322, 412
ScrFI CCNGG 3 cut(s) 23, 283, 325
SduI GDGCHC 4 cut(s) 126, 309, 453, 483
SetI ASST 7 cut(s) 94, 126, 274, 309, 321, 372, 483
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 330, 482
SmoI CTYRAG 2 cut(s) 330, 482
Sse9I AATT 4 cut(s) 51, 67, 426, 530
SsiI CCGC 1 cut(s) 223
SspMI CTAG 3 cut(s) 117, 201, 291
SstI GAGCTC 3 cut(s) 126, 309, 483
StyD4I CCNGG 3 cut(s) 21, 281, 323
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 86, 401
TasI AATT 4 cut(s) 51, 67, 426, 530
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 2 cut(s) 207, 597
Tru9I TTAA 2 cut(s) 207, 597
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 234, 569
VpaK11BI GGWCC 1 cut(s) 521
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 2 cut(s) 51, 530
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XspI CTAG 3 cut(s) 117, 201, 291
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.