Rmu_sc0000560.1_g000009

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000560.1
OG0004837
Physical Location & Seq
Reverse (-)
48184 .. 49784
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
atgatgatgaagtcaaatagacatatgcccaatgcagcaaaagatttaacagaagcttttcataaagagaacttacaaatcagaaaagttccttcaatgtttggtggtgctcacaatattggtttcgactatagagactgctataatcatttaaggaacgtgaggcacaaagagttggaatatggagatgcacaatcagtcctcaattactttaggaaaaagcaagtagagaatccacaattcttttatgctatccagtgtgatgaagatgcatatcggacaaacaagtatgacatgccatttgccccattcactggagtaaaccatcacttccaatccatacaatttggatgtgcccttttacaagatgagacagaggcaacatttctatggttatttgagacgtggcttgaagctatgggacgtagacattcgttatgtgttatcactgaccaagatttggcaatgaaaggagcaattgctaagatttttcacaatactcgtcatcgcctttgcatttggcatataaagaaaaagtttggtgaaaagttgtcacatgtatattataaaaagtccaacttcaagactggcatgaaaaagtgtatatgggcaacatacagaacagaggaatttgaagagcaatggaagaagttgattgaggagcatgaattagaacaaaatgaatggctacaacaactttatgaaattcgtgaacattggattcctgtatataattgtagcacattttttgccggaatgaatacaactgggcgtagtgaaggcactaatgcattttttgatgactttgttacatcaacgaccaatttgagagaatttgttgtcaagtatgaacaagccttacagaggattattacaagggaaagtagcaaagattttatatcggagcataaatatcgtattgtgaatgatgatgactttcttttgaaacatgcagcacaggtgtacactagaaatatatttgaaaaattcaagagtgaatgggttagagtcaaacggctcagagttgaagaaatgggttccgatgatcagtttcatagatactcaatgatgaagaaaactgacaactcacaagagttttttgtggagctgaatttacaaacacatgaagatgaggcctacaaaatgttcatggatggtttagatgaactgtcaaaaaaaaattcagaagttaataaggtatcaaaagaagatgttgtggagtctcaagataatgttttccaagatgaagcagatcaacatacgagtaagatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

424

Amino Acids

50.69

Weight (kDa)

6.27

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 91 - 179 2e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 567
AccB7I CCANNNNNTGG 2 cut(s) 314, 460
AccI GTMKAC 1 cut(s) 427
AcsI RAATTY 6 cut(s) 629, 705, 833, 986, 1111, 1180
AfaI GTAC 1 cut(s) 965
AfiI CCNNNNNNNGG 3 cut(s) 314, 460, 864
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 8 cut(s) 96, 413, 583, 635, 946, 983, 991, 1028
AjiI CACGTC 1 cut(s) 405
AluBI AGCT 3 cut(s) 56, 416, 1108
AluI AGCT 3 cut(s) 56, 416, 1108
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 4 cut(s) 129, 365, 395, 1227
AoxI GGCC 1 cut(s) 1134
ApeKI GCWGC 2 cut(s) 35, 953
ApoI RAATTY 6 cut(s) 629, 705, 833, 986, 1111, 1180
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 47, 965
BccI CCATC 2 cut(s) 333, 1148
BceAI ACGGC 1 cut(s) 1031
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BclI TGATCA 1 cut(s) 1045
BcoDI GTCTC 4 cut(s) 129, 365, 395, 1227
BfaI CTAG 1 cut(s) 969
BfmI CTRYAG 1 cut(s) 130
BglII AGATCT 1 cut(s) 1269
BisI GCNGC 2 cut(s) 36, 954
BlsI GCNGC 2 cut(s) 37, 955
BmgBI CACGTC 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 1039
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 2 cut(s) 178, 259
BmuI ACTGGG 1 cut(s) 777
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 1209
BsaBI GATNNNNATC 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 460, 864
Bse1I ACTGG 4 cut(s) 256, 319, 592, 772
Bse3DI GCAATG 2 cut(s) 471, 647
Bse8I GATNNNNATC 1 cut(s) 273
BseGI GGATG 2 cut(s) 356, 1159
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 3 cut(s) 314, 460, 864
BseMI GCAATG 2 cut(s) 471, 647
BseMII CTCAG 1 cut(s) 1033
BseNI ACTGG 4 cut(s) 256, 319, 592, 772
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 2 cut(s) 47, 965
BshFI GGCC 1 cut(s) 1136
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 3 cut(s) 314, 460, 864
BsmAI GTCTC 4 cut(s) 129, 365, 395, 1227
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 1 cut(s) 1136
Bsp1286I GDGCHC 2 cut(s) 112, 358
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 3 cut(s) 1045, 1252, 1269
BspANI GGCC 1 cut(s) 1136
BspCNI CTCAG 1 cut(s) 1032
BspLI GGNNCC 1 cut(s) 1039
BspQI GCTCTTC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 471, 647
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 4 cut(s) 256, 319, 592, 772
BssMI GATC 3 cut(s) 1045, 1252, 1269
Bst4CI ACNGT 1 cut(s) 1170
Bst6I CTCTTC 1 cut(s) 630
BstAUI TGTACA 1 cut(s) 963
BstDEI CTNAG 2 cut(s) 483, 1019
BstENI CCTNNNNNAGG 1 cut(s) 862
BstF5I GGATG 2 cut(s) 356, 1159
BstKTI GATC 3 cut(s) 1048, 1255, 1272
BstMAI GTCTC 4 cut(s) 129, 365, 395, 1227
BstMBI GATC 3 cut(s) 1045, 1252, 1269
BstNSI RCATGY 3 cut(s) 298, 560, 953
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 47, 965
BstX2I RGATCY 1 cut(s) 1269
BstYI RGATCY 1 cut(s) 1269
BsuRI GGCC 1 cut(s) 1136
BtgZI GCGATG 1 cut(s) 491
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 356, 1159
BtsIMutI CAGTG 3 cut(s) 263, 312, 447
Csp6I GTAC 1 cut(s) 964
CviAII CATG 7 cut(s) 295, 557, 592, 665, 950, 1124, 1150
CviJI RGCY 8 cut(s) 56, 409, 416, 688, 857, 1018, 1108, 1136
CviKI_1 RGCY 8 cut(s) 56, 409, 416, 688, 857, 1018, 1108, 1136
CviQI GTAC 1 cut(s) 964
DdeI CTNAG 2 cut(s) 483, 1019
DpnI GATC 3 cut(s) 1047, 1254, 1271
DpnII GATC 3 cut(s) 1045, 1252, 1269
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco147I AGGCCT 1 cut(s) 1136
EcoNI CCTNNNNNAGG 1 cut(s) 862
EcoT22I ATGCAT 2 cut(s) 274, 793
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 7 cut(s) 298, 560, 595, 668, 953, 1127, 1153
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 435
FatI CATG 7 cut(s) 294, 556, 591, 664, 949, 1123, 1149
FauNDI CATATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 1045
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 36, 954
FokI GGATG 2 cut(s) 363, 1166
Fsp4HI GCNGC 2 cut(s) 36, 954
FspBI CTAG 1 cut(s) 969
GluI GCNGC 2 cut(s) 36, 954
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 1136
HapII CCGG 1 cut(s) 753
Hin1II CATG 7 cut(s) 298, 560, 595, 668, 953, 1127, 1153
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 4 cut(s) 232, 721, 1008, 1220
HpaII CCGG 1 cut(s) 753
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 5 cut(s) 322, 428, 713, 964, 966
Hpy188I TCNGA 7 cut(s) 83, 279, 904, 1022, 1042, 1186, 1274
Hpy188III TCNNGA 4 cut(s) 583, 710, 991, 1226
Hpy8I GTNNAC 5 cut(s) 322, 428, 713, 964, 966
HpyAV CCTTC 2 cut(s) 102, 773
HpyCH4III ACNGT 1 cut(s) 1170
HpyCH4IV ACGT 3 cut(s) 159, 404, 424
HpyCH4V TGCA 6 cut(s) 35, 191, 272, 516, 791, 953
HpyF3I CTNAG 2 cut(s) 483, 1019
HpySE526I ACGT 3 cut(s) 159, 404, 424
Hsp92II CATG 7 cut(s) 298, 560, 595, 668, 953, 1127, 1153
Ksp22I TGATCA 1 cut(s) 1045
Kzo9I GATC 3 cut(s) 1045, 1252, 1269
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 4 cut(s) 473, 661, 904, 1105
LpnPI CCDG 7 cut(s) 269, 300, 573, 738, 753, 766, 944
Lsp1109I GCAGC 2 cut(s) 47, 965
LweI GCATC 2 cut(s) 178, 259
MaeI CTAG 1 cut(s) 969
MaeII ACGT 3 cut(s) 159, 404, 424
MaeIII GTNAC 2 cut(s) 552, 808
MalI GATC 3 cut(s) 1047, 1254, 1271
MboI GATC 3 cut(s) 1045, 1252, 1269
MboII GAAGA 7 cut(s) 278, 647, 658, 1040, 1084, 1139, 1220
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 1269
MhlI GDGCHC 2 cut(s) 112, 358
MlyI GAGTC 2 cut(s) 1017, 1229
MmeI TCCRAC 2 cut(s) 156, 600
MnlI CCTC 7 cut(s) 156, 212, 370, 619, 652, 858, 1126
Mph1103I ATGCAT 2 cut(s) 274, 793
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 3 cut(s) 47, 152, 1191
MslI CAYNNNNRTG 2 cut(s) 388, 1128
MspI CCGG 1 cut(s) 753
MunI CAATTG 1 cut(s) 477
NdeI CATATG 1 cut(s) 24
NdeII GATC 3 cut(s) 1045, 1252, 1269
NlaIII CATG 7 cut(s) 298, 560, 595, 668, 953, 1127, 1153
NlaIV GGNNCC 1 cut(s) 1039
NmuCI GTSAC 1 cut(s) 552
NsiI ATGCAT 2 cut(s) 274, 793
NspI RCATGY 3 cut(s) 298, 560, 953
PceI AGGCCT 1 cut(s) 1136
PciI ACATGT 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 232, 721
PflMI CCANNNNNTGG 2 cut(s) 314, 460
PkrI GCNGC 2 cut(s) 37, 955
PleI GAGTC 2 cut(s) 1016, 1228
PpsI GAGTC 2 cut(s) 1016, 1228
PscI ACATGT 1 cut(s) 556
PsiI TTATAA 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 1039
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PsuI RGATCY 1 cut(s) 1269
RsaI GTAC 1 cut(s) 965
RsaNI GTAC 1 cut(s) 964
RseI CAYNNNNRTG 2 cut(s) 388, 1128
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 47, 152, 1191
SatI GCNGC 2 cut(s) 36, 954
Sau3AI GATC 3 cut(s) 1045, 1252, 1269
SchI GAGTC 2 cut(s) 1017, 1229
SduI GDGCHC 2 cut(s) 112, 358
SetI ASST 8 cut(s) 58, 162, 407, 418, 427, 963, 1110, 1200
SfaNI GCATC 2 cut(s) 178, 259
SfcI CTRYAG 1 cut(s) 130
SmiMI CAYNNNNRTG 2 cut(s) 388, 1128
SmlI CTYRAG 1 cut(s) 1224
SmoI CTYRAG 1 cut(s) 1224
SseBI AGGCCT 1 cut(s) 1136
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 969
StuI AGGCCT 1 cut(s) 1136
TaaI ACNGT 1 cut(s) 1170
TaiI ACGT 3 cut(s) 162, 407, 427
TaqI TCGA 1 cut(s) 126
TatI WGTACW 1 cut(s) 963
TfiI GAWTC 2 cut(s) 232, 721
Tru1I TTAA 3 cut(s) 47, 152, 1191
Tru9I TTAA 3 cut(s) 47, 152, 1191
TscAI CASTG 3 cut(s) 263, 319, 454
TseFI GTSAC 1 cut(s) 552
TseI GCWGC 2 cut(s) 35, 953
Tsp45I GTSAC 1 cut(s) 552
TspRI CASTG 3 cut(s) 263, 319, 454
Van91I CCANNNNNTGG 2 cut(s) 314, 460
XagI CCTNNNNNAGG 1 cut(s) 862
XapI RAATTY 6 cut(s) 629, 705, 833, 986, 1111, 1180
XceI RCATGY 3 cut(s) 298, 560, 953
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 969
Zsp2I ATGCAT 2 cut(s) 274, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.