Rmu_sc0000954.1_g000010

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000954.1
OG0006404
Physical Location & Seq
Forward (+)
41378 .. 42797
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
atggcaacagctgcgctgctcattgaagccaacccattaatgaaattgaagcaaaacaccctattacgcacttttcgtcctcttccatcaaaaccaatcgcattaacgtttagcaatcaacgttgctttgctcctagaatatttaagaaccctaaacctcgatgtttcttgcccgccgactctaaatgtcatccctctcaatctcagtccctcaatgttcttaaagataatcggccagcggcagcaaaccctaatttcacagtcgccgttaataaggtatgggaaaagtgtcacagggcattgagggaaccagcaatggctgccgtgctgtttggtttgttagtcatgtgcaaccccaactcagcagcgttggctgctccggtgggtcgggtgggtgtatcaaagttcactagagcggctgcacagcaatgctttgataaaattgtgttcagagagagggttagatatgacgaagagaccattgtcaatgtggacaatataaaaactcaaagcacaacaagtcagagatcaactaatgaatctcacaatgacaatgtagaggtaaacactttgaacttgagatctcggttgaatgtcattgcgagaatattttttagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

206

Amino Acids

23.11

Weight (kDa)

10.33

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 132 - 185 6e-06 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 416
AciI CCGC 3 cut(s) 174, 239, 416
AclI AACGTT 2 cut(s) 107, 121
AcoI YGGCCR 1 cut(s) 233
AgsI TTSAA 4 cut(s) 26, 49, 574, 592
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 470
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 7 cut(s) 11, 16, 242, 320, 365, 374, 419
AseI ATTAAT 1 cut(s) 38
AspLEI GCGC 1 cut(s) 16
BbvI GCAGC 6 cut(s) 3, 254, 307, 361, 377, 406
BccI CCATC 1 cut(s) 94
BceAI ACGGC 2 cut(s) 251, 308
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 135, 411
BglII AGATCT 1 cut(s) 581
BisI GCNGC 9 cut(s) 12, 17, 240, 243, 321, 366, 375, 417, 420
BlsI GCNGC 9 cut(s) 13, 18, 241, 244, 322, 367, 376, 418, 421
BmiI GGNNCC 1 cut(s) 309
BoxI GACNNNNGTC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 470
BsaWI WCCGGW 1 cut(s) 379
Bse3DI GCAATG 3 cut(s) 321, 434, 597
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 3 cut(s) 321, 434, 597
BseMII CTCAG 2 cut(s) 218, 375
BseXI GCAGC 6 cut(s) 3, 254, 307, 361, 377, 406
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 470
Bsp143I GATC 2 cut(s) 527, 581
BspACI CCGC 3 cut(s) 174, 239, 416
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 217, 374
BspLI GGNNCC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 416
BsrDI GCAATG 3 cut(s) 321, 434, 597
BssMI GATC 2 cut(s) 527, 581
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 87, 468
BstAPI GCANNNNNTGC 2 cut(s) 11, 320
BstC8I GCNNGC 2 cut(s) 174, 237
BstDEI CTNAG 2 cut(s) 204, 361
BstF5I GGATG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 530, 584
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 527, 581
BstMWI GCNNNNNNNGC 4 cut(s) 11, 320, 371, 374
BstPAI GACNNNNGTC 1 cut(s) 482
BstV1I GCAGC 6 cut(s) 3, 254, 307, 361, 377, 406
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 174, 237
CfoI GCGC 1 cut(s) 16
CviAII CATG 1 cut(s) 346
CviJI RGCY 6 cut(s) 11, 29, 235, 320, 374, 419
CviKI_1 RGCY 6 cut(s) 11, 29, 235, 320, 374, 419
DdeI CTNAG 2 cut(s) 204, 361
DpnI GATC 2 cut(s) 529, 583
DpnII GATC 2 cut(s) 527, 581
EaeI YGGCCR 1 cut(s) 233
Eam1104I CTCTTC 2 cut(s) 87, 468
EarI CTCTTC 2 cut(s) 87, 468
Eco31I GGTCTC 1 cut(s) 470
FaeI CATG 1 cut(s) 349
FaiI YATR 4 cut(s) 280, 347, 468, 500
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 9 cut(s) 12, 17, 240, 243, 321, 366, 375, 417, 420
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 9 cut(s) 12, 17, 240, 243, 321, 366, 375, 417, 420
FspBI CTAG 2 cut(s) 135, 411
GlaI GCGC 1 cut(s) 15
GluI GCNGC 9 cut(s) 12, 17, 240, 243, 321, 366, 375, 417, 420
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 380
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 2 cut(s) 179, 539
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 3 cut(s) 408, 493, 565
Hpy188I TCNGA 2 cut(s) 452, 525
Hpy8I GTNNAC 3 cut(s) 408, 493, 565
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 107, 121
HpyCH4V TGCA 2 cut(s) 351, 422
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 320, 371, 374
HpyF3I CTNAG 2 cut(s) 204, 361
HpySE526I ACGT 2 cut(s) 107, 121
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 527, 581
LmnI GCTCC 2 cut(s) 136, 382
LpnPI CCDG 4 cut(s) 249, 280, 324, 393
Lsp1109I GCAGC 6 cut(s) 3, 254, 307, 361, 377, 406
MaeI CTAG 2 cut(s) 135, 411
MaeII ACGT 2 cut(s) 107, 121
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 529, 583
MbiI CCGCTC 1 cut(s) 416
MboI GATC 2 cut(s) 527, 581
MboII GAAGA 2 cut(s) 74, 485
MflI RGATCY 1 cut(s) 581
MluCI AATT 3 cut(s) 44, 253, 441
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 90, 168, 205, 221, 297, 450, 553
MseI TTAA 5 cut(s) 38, 104, 144, 222, 270
MslI CAYNNNNRTG 1 cut(s) 427
MspA1I CMGCKG 2 cut(s) 11, 239
MspI CCGG 1 cut(s) 380
MwoI GCNNNNNNNGC 4 cut(s) 11, 320, 371, 374
NdeII GATC 2 cut(s) 527, 581
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 9 cut(s) 13, 18, 241, 244, 322, 367, 376, 418, 421
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 38
Psp1406I AACGTT 2 cut(s) 107, 121
PspN4I GGNNCC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 427
SaqAI TTAA 5 cut(s) 38, 104, 144, 222, 270
SatI GCNGC 9 cut(s) 12, 17, 240, 243, 321, 366, 375, 417, 420
Sau3AI GATC 2 cut(s) 527, 581
SchI GAGTC 1 cut(s) 173
SetI ASST 6 cut(s) 13, 110, 124, 160, 279, 564
SmiMI CAYNNNNRTG 1 cut(s) 427
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
Sse9I AATT 3 cut(s) 44, 253, 441
SsiI CCGC 3 cut(s) 174, 239, 416
SspI AATATT 2 cut(s) 141, 609
SspMI CTAG 2 cut(s) 135, 411
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 110, 124
TaqI TCGA 1 cut(s) 160
TasI AATT 3 cut(s) 44, 253, 441
TauI GCSGC 2 cut(s) 242, 419
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 5 cut(s) 38, 104, 144, 222, 270
Tru9I TTAA 5 cut(s) 38, 104, 144, 222, 270
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 7 cut(s) 11, 16, 242, 320, 365, 374, 419
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 56, 552
VspI ATTAAT 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 2 cut(s) 135, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.