Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002082.1

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Forward (+)

14266 .. 16177

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atgctctcctcaagaagaactagtgatgctctaactgtgcagtttggtacgattcttaaaaagattgtgtcagccaaagaatcaatgggagatattatgaaaacctcctccttcgcccttactgaagccaagtatgttgctggtgagaacatcaaacacattgttctcgagaatgtcaacactgcctctcttaaagttcgatcaaagcaagagaatgttgctggtgtaaagctcccaaaatttgaatactttactgaaggtgagaccaagaatgacctcactggattggccagaggtggacaagaggttcaactgtgtaaggctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaacatcatttttaacccttgatgaagcaatcaagagcacaaatcgcagggtcaatgctctggagaatgtggtgaagcctaggttggagaatacaataacttatatcaagggggagttggatgagctggaaagggaggacttcttcaggttaaagaagatacagggatttaagaagagggaaattgagagacagatggctgctgctaagaacttctcggacgaccaggctgcagaagttatttctttaaagaagggtatttctctaaattcagctcaaaatttgttcctgccccgcgtgcgcccctgcgcacactgctgccaccgaagcatccctgcacctagccccttgctagcccgctgctcctgcagccctttcggcctgcatacctgccagcgcgcccccgcgctcaattcgctgccttgcagccccgcgcccgtgcgtccaccccacgctgcccctgcagcgtccctgcttccccgtgcacaccagcgcacgctgctgccccgcctacgcacccgtgcacctgcatccctacaccactgctgctgccccgcattcgctgcacgcttctactcggattgcttcgctccatcacgcctgcatcgacacgcgcgtgatccaaaaccaaaaagtaagtatccaaaagcgatgtcgaaacttgactttcctgcacttacctcaactggctcggaatatcatagttgggccacggatgttgagcaccatctcactccaaaagggatcctacccttaattcaagctcctaatcctactctcatatttgagcgtacggctacgaacaatgccaccgccctcatcttgatgaggcgccacatggataaatcactccgactggagtacatggcaatcaaggatgctagagaattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

420

Amino Acids

46.74

Weight (kDa)

9.61

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	7 - 178	5.2e-57	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	904
Acc16I	TGCGCA	1 cut(s)	679
Acc36I	ACCTGC	2 cut(s)	767, 904
AccB1I	GGYRCC	1 cut(s)	1200
AccII	CGCG	6 cut(s)	666, 768, 776, 803, 983, 985
AciI	CCGC	7 cut(s)	664, 727, 774, 801, 877, 924, 1182
AclWI	GGATC	3 cut(s)	983, 1108, 1121
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	239, 637, 649
AcuI	CTGAAG	3 cut(s)	144, 276, 499
AcyI	GRCGYC	1 cut(s)	1201
AfaI	GTAC	3 cut(s)	49, 1162, 1232
AgsI	TTSAA	4 cut(s)	245, 311, 371, 1130
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AleI	CACNNNNGTG	1 cut(s)	984
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	5 cut(s)	232, 358, 496, 644, 1133
AluI	AGCT	5 cut(s)	232, 358, 496, 644, 1133
Alw21I	GWGCWC	4 cut(s)	410, 856, 895, 1095
Alw26I	GTCTC	2 cut(s)	257, 553
Alw44I	GTGCAC	2 cut(s)	852, 891
AlwI	GGATC	3 cut(s)	983, 1108, 1121
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	288, 748, 1077
ApaLI	GTGCAC	2 cut(s)	852, 891
ApoI	RAATTY	3 cut(s)	239, 637, 649
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
AspA2I	CCTAGG	1 cut(s)	449
AspLEI	GCGC	9 cut(s)	672, 680, 768, 770, 778, 805, 864, 985, 1203
AspS9I	GGNCC	1 cut(s)	1077
AsuHPI	GGTGA	3 cut(s)	155, 272, 454
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	167
AvrII	CCTAGG	1 cut(s)	449
BaeGI	GKGCMC	2 cut(s)	856, 895
BalI	TGGCCA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	1113
BanI	GGYRCC	1 cut(s)	1200
Bbv12I	GWGCWC	4 cut(s)	410, 856, 895, 1095
BccI	CCATC	3 cut(s)	559, 970, 1104
BceAI	ACGGC	1 cut(s)	1179
BcgI	CGANNNNNNTGC	4 cut(s)	581, 615, 727, 761
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	1020
BcoDI	GTCTC	2 cut(s)	257, 553
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	5 cut(s)	21, 450, 711, 722, 1251
BfmI	CTRYAG	3 cut(s)	600, 736, 831
BfoI	RGCGCY	1 cut(s)	1204
BfuAI	ACCTGC	2 cut(s)	767, 904
BfuI	GTATCC	1 cut(s)	1020
BglI	GCCNNNNNGGC	1 cut(s)	747
BlnI	CCTAGG	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	1077
BmiI	GGNNCC	2 cut(s)	1115, 1202
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	5 cut(s)	16, 708, 908, 982, 1237
BmtI	GCTAGC	1 cut(s)	725
BpmI	CTGGAG	2 cut(s)	452, 1247
BsaHI	GRCGYC	1 cut(s)	1201
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	449, 1080
Bse1I	ACTGG	3 cut(s)	286, 1060, 1230
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	449, 1080
BseGI	GGATG	5 cut(s)	496, 699, 899, 1090, 1252
BseNI	ACTGG	3 cut(s)	286, 1060, 1230
BsePI	GCGCGC	1 cut(s)	766
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	2 cut(s)	856, 895
BsgI	GTGCAG	4 cut(s)	59, 690, 918, 1026
Bsh1236I	CGCG	6 cut(s)	666, 768, 776, 803, 983, 985
BshFI	GGCC	3 cut(s)	290, 750, 1079
BshNI	GGYRCC	1 cut(s)	1200
BsiHKAI	GWGCWC	4 cut(s)	410, 856, 895, 1095
BsiHKCI	CYCGRG	1 cut(s)	167
BsiWI	CGTACG	1 cut(s)	1160
BslFI	GGGAC	1 cut(s)	823
BsmAI	GTCTC	2 cut(s)	257, 553
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	3 cut(s)	290, 750, 1079
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	4 cut(s)	410, 856, 895, 1095
Bsp143I	GATC	3 cut(s)	200, 988, 1113
BspACI	CCGC	7 cut(s)	664, 727, 774, 801, 877, 924, 1182
BspANI	GGCC	3 cut(s)	290, 750, 1079
BspFNI	CGCG	6 cut(s)	666, 768, 776, 803, 983, 985
BspLI	GGNNCC	2 cut(s)	1115, 1202
BspMAI	CTGCAG	3 cut(s)	604, 740, 835
BspMI	ACCTGC	2 cut(s)	767, 904
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	983, 1108, 1121
BspT107I	GGYRCC	1 cut(s)	1200
BspTNI	GGTCTC	1 cut(s)	257
BsrI	ACTGG	3 cut(s)	286, 1060, 1230
BssECI	CCNNGG	2 cut(s)	449, 1080
BssHII	GCGCGC	1 cut(s)	766
BssMI	GATC	3 cut(s)	200, 988, 1113
BssNI	GRCGYC	1 cut(s)	1201
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	37, 315
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	1201
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstDEI	CTNAG	1 cut(s)	576
BstDSI	CCRYGG	1 cut(s)	1080
BstF5I	GGATG	5 cut(s)	496, 699, 899, 1090, 1252
BstFNI	CGCG	6 cut(s)	666, 768, 776, 803, 983, 985
BstH2I	RGCGCY	1 cut(s)	1204
BstHHI	GCGC	9 cut(s)	672, 680, 768, 770, 778, 805, 864, 985, 1203
BstKTI	GATC	3 cut(s)	203, 991, 1116
BstMAI	GTCTC	2 cut(s)	257, 553
BstMBI	GATC	3 cut(s)	200, 988, 1113
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	3 cut(s)	600, 736, 831
BstSLI	GKGCMC	2 cut(s)	856, 895
BstUI	CGCG	6 cut(s)	666, 768, 776, 803, 983, 985
BstX2I	RGATCY	1 cut(s)	1113
BstYI	RGATCY	1 cut(s)	1113
BsuI	GTATCC	1 cut(s)	1020
BsuRI	GGCC	3 cut(s)	290, 750, 1079
BtgI	CCRYGG	1 cut(s)	1080
BtgZI	GCGATG	1 cut(s)	1034
BtsCI	GGATG	5 cut(s)	496, 699, 899, 1090, 1252
BtsI	GCAGTG	3 cut(s)	180, 682, 910
BtsIMutI	CAGTG	4 cut(s)	180, 279, 682, 910
BveI	ACCTGC	2 cut(s)	767, 904
CfoI	GCGC	9 cut(s)	672, 680, 768, 770, 778, 805, 864, 985, 1203
Cfr13I	GGNCC	1 cut(s)	1077
CseI	GACGC	2 cut(s)	800, 825
Csp6I	GTAC	3 cut(s)	48, 1161, 1231
CspCI	CAANNNNNGTGG	2 cut(s)	1069, 1104
CviAII	CATG	2 cut(s)	1207, 1234
CviQI	GTAC	3 cut(s)	48, 1161, 1231
DdeI	CTNAG	1 cut(s)	576
DinI	GGCGCC	1 cut(s)	1202
DpnI	GATC	3 cut(s)	202, 990, 1115
DpnII	GATC	3 cut(s)	200, 988, 1113
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	257
Eco57I	CTGAAG	3 cut(s)	144, 276, 499
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	449
EgeI	GGCGCC	1 cut(s)	1202
EheI	GGCGCC	1 cut(s)	1202
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	2 cut(s)	1210, 1237
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	2 cut(s)	1206, 1233
FauI	CCCGC	6 cut(s)	671, 734, 781, 808, 884, 931
FokI	GGATG	5 cut(s)	503, 686, 886, 1097, 1259
FspBI	CTAG	5 cut(s)	21, 450, 711, 722, 1251
FspI	TGCGCA	1 cut(s)	679
GlaI	GCGC	9 cut(s)	671, 679, 767, 769, 777, 804, 863, 984, 1202
GsuI	CTGGAG	2 cut(s)	452, 1247
HaeII	RGCGCY	1 cut(s)	1204
HaeIII	GGCC	3 cut(s)	290, 750, 1079
HgaI	GACGC	2 cut(s)	800, 825
HhaI	GCGC	9 cut(s)	672, 680, 768, 770, 778, 805, 864, 985, 1203
Hin1I	GRCGYC	1 cut(s)	1201
Hin1II	CATG	2 cut(s)	1210, 1237
Hin6I	GCGC	9 cut(s)	670, 678, 766, 768, 776, 803, 862, 983, 1201
HinP1I	GCGC	9 cut(s)	670, 678, 766, 768, 776, 803, 862, 983, 1201
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	52, 80
HphI	GGTGA	3 cut(s)	155, 272, 454
Hpy166II	GTNNAC	5 cut(s)	178, 299, 815, 854, 893
Hpy188I	TCNGA	4 cut(s)	589, 949, 1063, 1223
Hpy188III	TCNNGA	6 cut(s)	12, 167, 169, 403, 431, 1192
Hpy8I	GTNNAC	5 cut(s)	178, 299, 815, 854, 893
HpyAV	CCTTC	3 cut(s)	121, 251, 616
HpyCH4III	ACNGT	2 cut(s)	37, 315
HpyF3I	CTNAG	1 cut(s)	576
Hsp92I	GRCGYC	1 cut(s)	1201
Hsp92II	CATG	2 cut(s)	1210, 1237
HspAI	GCGC	9 cut(s)	670, 678, 766, 768, 776, 803, 862, 983, 1201
KasI	GGCGCC	1 cut(s)	1200
Kzo9I	GATC	3 cut(s)	200, 988, 1113
LmnI	GCTCC	5 cut(s)	237, 355, 737, 964, 1138
LweI	GCATC	5 cut(s)	16, 708, 908, 982, 1237
MaeI	CTAG	5 cut(s)	21, 450, 711, 722, 1251
MalI	GATC	3 cut(s)	202, 990, 1115
MboI	GATC	3 cut(s)	200, 988, 1113
MboII	GAAGA	4 cut(s)	27, 505, 538, 556
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	1113
MhlI	GDGCHC	4 cut(s)	410, 856, 895, 1095
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	8 cut(s)	239, 339, 552, 637, 649, 781, 1125, 1256
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	1201
MmeI	TCCRAC	3 cut(s)	435, 468, 1246
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	7 cut(s)	57, 192, 383, 521, 540, 617, 1124
MslI	CAYNNNNRTG	2 cut(s)	984, 1193
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	729
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	6 cut(s)	666, 768, 776, 803, 983, 985
NarI	GGCGCC	1 cut(s)	1201
NdeII	GATC	3 cut(s)	200, 988, 1113
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	2 cut(s)	1210, 1237
NlaIV	GGNNCC	2 cut(s)	1115, 1202
NsbI	TGCGCA	1 cut(s)	679
OliI	CACNNNNGTG	1 cut(s)	984
PaeR7I	CTCGAG	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	904
PauI	GCGCGC	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	2 cut(s)	973, 982
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	2 cut(s)	52, 80
Pfl23II	CGTACG	1 cut(s)	1160
PluTI	GGCGCC	1 cut(s)	1204
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspLI	CGTACG	1 cut(s)	1160
PspN4I	GGNNCC	2 cut(s)	1115, 1202
PspPI	GGNCC	1 cut(s)	1077
PstI	CTGCAG	3 cut(s)	604, 740, 835
PsuI	RGATCY	1 cut(s)	1113
PteI	GCGCGC	1 cut(s)	766
RsaI	GTAC	3 cut(s)	49, 1162, 1232
RsaNI	GTAC	3 cut(s)	48, 1161, 1231
RseI	CAYNNNNRTG	2 cut(s)	984, 1193
SaqAI	TTAA	7 cut(s)	57, 192, 383, 521, 540, 617, 1124
Sau3AI	GATC	3 cut(s)	200, 988, 1113
Sau96I	GGNCC	1 cut(s)	1077
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	4 cut(s)	410, 856, 895, 1095
SfaNI	GCATC	5 cut(s)	16, 708, 908, 982, 1237
SfcI	CTRYAG	3 cut(s)	600, 736, 831
SfoI	GGCGCC	1 cut(s)	1202
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	984, 1193
SmlI	CTYRAG	2 cut(s)	10, 167
SmoI	CTYRAG	2 cut(s)	10, 167
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	8 cut(s)	239, 339, 552, 637, 649, 781, 1125, 1256
SsiI	CCGC	7 cut(s)	664, 727, 774, 801, 877, 924, 1182
SspDI	GGCGCC	1 cut(s)	1200
SspMI	CTAG	5 cut(s)	21, 450, 711, 722, 1251
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	37, 315
TaqI	TCGA	4 cut(s)	168, 199, 976, 1025
TasI	AATT	8 cut(s)	239, 339, 552, 637, 649, 781, 1125, 1256
TatI	WGTACW	1 cut(s)	1230
TfiI	GAWTC	2 cut(s)	52, 80
Tru1I	TTAA	7 cut(s)	57, 192, 383, 521, 540, 617, 1124
Tru9I	TTAA	7 cut(s)	57, 192, 383, 521, 540, 617, 1124
TscAI	CASTG	4 cut(s)	187, 286, 689, 917
TspDTI	ATGAA	2 cut(s)	113, 408
TspGWI	ACGGA	1 cut(s)	1097
TspRI	CASTG	4 cut(s)	187, 286, 689, 917
VneI	GTGCAC	2 cut(s)	852, 891
XapI	RAATTY	3 cut(s)	239, 637, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	167
XmaJI	CCTAGG	1 cut(s)	449
XspI	CTAG	5 cut(s)	21, 450, 711, 722, 1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.