Rmu_sc0002806.1_g000015

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002806.1
OG0003016
Physical Location & Seq
Reverse (-)
52546 .. 59363
6818 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1026 bp
atgaggactttgagctgggggccgattacagcagtcagggctttgagcccagaagggtcgttacaagagctcgatgattcaccggtttcagtggagctggcgcccttctgcagcgaagcccagtttgatcggctcgtcactgaggctcaacagctccagcagttgttcgtcatcatttgggcaagcattactcctagaactgtcttcattattttggctggaagcttcaaaagcaacgaaattatctttttcaagcacataaattgcagtaaaggaacaaggacaataaggtcagtcctccctgcaattctatttgtgaaagcaagcaatgcagagttgtgggagaataaagatgatacgcgattctctgacgttccaacagtcacaaatgttaggcaggatcttacggagtggcaagaaaagcatgccaatcttgttctttcgaccgtcgaggaaatttcaaaattaagatatgaattgtgtccacgtgttatgaccgaaaggaaattttggaggatatatttcatactagttaacaatcatgtcgcaccctatgagaagcgttatctggaggaagttaagcaaaagtcaactgaacaatttttagatgacagagtaaaggaacctactaaagttgaaacaacttctaaagcagaggataaggaagaaaaacatcacactaaaacttcaacctcatcaactacggatcaagacttggatgcatttctcctgggggacagtgatgatgatccagatcatgatggtggggactctgatgatgatttcgacaaattagtggacggattggttcaaactaccgtacgagatacactgaaaaagcatgaactgacaagacctcttgctacgaaagagttggagtggtttgcggcctctgctttgttggcacttcccatcttaattctgttcagagttttatcctcaattttctgtacaaagtcaacaaaacctgtacggagtacccaccattcacgtcgcaaggccaaaaggggtcatccagacaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

341

Amino Acids

38.99

Weight (kDa)

5.98

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 136 - 182 1e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 289
AccB1I GGYRCC 1 cut(s) 100
AccII CGCG 1 cut(s) 361
AciI CCGC 1 cut(s) 887
AclWI GGATC 3 cut(s) 408, 714, 743
AcsI RAATTY 2 cut(s) 456, 506
AcvI CACGTG 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 4 cut(s) 822, 952, 972, 979
AflIII ACRYGT 1 cut(s) 487
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 6 cut(s) 229, 253, 462, 638, 690, 812
AhlI ACTAGT 1 cut(s) 529
AjiI CACGTC 1 cut(s) 992
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 5 cut(s) 15, 70, 97, 154, 225
AluI AGCT 5 cut(s) 15, 70, 97, 154, 225
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 3 cut(s) 408, 714, 743
AoxI GGCC 3 cut(s) 20, 888, 999
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 456, 506
AsiGI ACCGGT 1 cut(s) 82
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 72
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 2 cut(s) 50, 72
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbrPI CACGTG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 755, 920
BciT130I CCWGG 1 cut(s) 731
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 2 cut(s) 195, 530
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 2 cut(s) 112, 888
BlsI GCNGC 2 cut(s) 113, 889
Bme1390I CCNGG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 992
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 21, 102, 624
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 709
BmuI ACTGGG 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 140, 590
BsaAI YACGTR 1 cut(s) 488
BsaBI GATNNNNATC 2 cut(s) 747, 753
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 730
BsaWI WCCGGW 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 2 cut(s) 747, 753
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 1 cut(s) 730
BseGI GGATG 2 cut(s) 724, 1012
BseJI GATNNNNATC 2 cut(s) 747, 753
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 3 cut(s) 22, 890, 1001
BshNI GGYRCC 1 cut(s) 100
BshTI ACCGGT 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 83
BsiWI CGTACG 1 cut(s) 820
BslFI GGGAC 2 cut(s) 749, 782
BsmFI GGGAC 2 cut(s) 749, 782
BsnI GGCC 3 cut(s) 22, 890, 1001
Bsp1286I GDGCHC 2 cut(s) 50, 72
Bsp1407I TGTACA 1 cut(s) 950
Bsp143I GATC 5 cut(s) 127, 400, 706, 748, 754
BspACI CCGC 1 cut(s) 887
BspANI GGCC 3 cut(s) 22, 890, 1001
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 3 cut(s) 21, 102, 624
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 3 cut(s) 408, 714, 743
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 950
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 730
BssMI GATC 5 cut(s) 127, 400, 706, 748, 754
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 5 cut(s) 202, 382, 448, 740, 820
BstACI GRCGYC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 950
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 4 cut(s) 99, 184, 325, 426
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 724, 1012
BstFNI CGCG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 5 cut(s) 130, 403, 709, 751, 757
BstMBI GATC 5 cut(s) 127, 400, 706, 748, 754
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 6 cut(s) 38, 231, 329, 421, 893, 902
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 3 cut(s) 22, 890, 1001
BtrI CACGTC 1 cut(s) 992
BtsCI GGATG 2 cut(s) 724, 1012
BtsIMutI CAGTG 4 cut(s) 96, 138, 745, 830
Cac8I GCNNGC 4 cut(s) 99, 184, 325, 426
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 4 cut(s) 821, 951, 971, 978
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 4 cut(s) 425, 542, 758, 842
CviQI GTAC 4 cut(s) 821, 951, 971, 978
DdeI CTNAG 1 cut(s) 141
DinI GGCGCC 1 cut(s) 102
DpnI GATC 5 cut(s) 129, 402, 708, 750, 756
DpnII GATC 5 cut(s) 127, 400, 706, 748, 754
DrdI GACNNNNNNGTC 1 cut(s) 289
DseDI GACNNNNNNGTC 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 2 cut(s) 50, 72
Eco53kI GAGCTC 1 cut(s) 70
Eco72I CACGTG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 724
EcoT38I GRGCYC 2 cut(s) 50, 72
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 4 cut(s) 428, 545, 761, 845
FaqI GGGAC 2 cut(s) 749, 782
FatI CATG 4 cut(s) 424, 541, 757, 841
Fnu4HI GCNGC 2 cut(s) 112, 888
FokI GGATG 2 cut(s) 731, 999
FriOI GRGCYC 2 cut(s) 50, 72
Fsp4HI GCNGC 2 cut(s) 112, 888
FspBI CTAG 2 cut(s) 195, 530
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 112, 888
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 140, 590
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 3 cut(s) 22, 890, 1001
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 428, 545, 761, 845
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 3 cut(s) 535, 591, 960
HindII GTYRAC 3 cut(s) 535, 591, 960
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 3 cut(s) 77, 363, 770
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 5 cut(s) 485, 535, 591, 799, 960
Hpy188I TCNGA 3 cut(s) 370, 775, 929
Hpy188III TCNNGA 5 cut(s) 569, 710, 752, 758, 1016
Hpy8I GTNNAC 5 cut(s) 485, 535, 591, 799, 960
Hpy99I CGWCG 2 cut(s) 452, 996
HpyAV CCTTC 2 cut(s) 47, 115
HpyCH4III ACNGT 5 cut(s) 202, 382, 448, 740, 820
HpyCH4IV ACGT 3 cut(s) 372, 487, 991
HpyCH4V TGCA 5 cut(s) 111, 267, 305, 332, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 231, 329, 421, 893, 902
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 3 cut(s) 372, 487, 991
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 428, 545, 761, 845
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 5 cut(s) 127, 400, 706, 748, 754
LmnI GCTCC 2 cut(s) 94, 159
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 195, 530
MaeII ACGT 3 cut(s) 372, 487, 991
MaeIII GTNAC 3 cut(s) 60, 136, 382
MalI GATC 5 cut(s) 129, 402, 708, 750, 756
MboI GATC 5 cut(s) 127, 400, 706, 748, 754
MboII GAAGA 2 cut(s) 196, 677
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 50, 72
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 2 cut(s) 401, 855
Mph1103I ATGCAT 1 cut(s) 724
MseI TTAA 4 cut(s) 467, 534, 579, 917
MslI CAYNNNNRTG 1 cut(s) 762
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 731
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 6 cut(s) 38, 231, 329, 421, 893, 902
NarI GGCGCC 1 cut(s) 101
NdeII GATC 5 cut(s) 127, 400, 706, 748, 754
NlaIII CATG 4 cut(s) 428, 545, 761, 845
NlaIV GGNNCC 3 cut(s) 21, 102, 624
NmuCI GTSAC 2 cut(s) 136, 382
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PagI TCATGA 1 cut(s) 757
PfeI GAWTC 2 cut(s) 77, 363
Pfl23II CGTACG 1 cut(s) 820
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 2 cut(s) 113, 889
PleI GAGTC 1 cut(s) 764
PluTI GGCGCC 1 cut(s) 104
PmaCI CACGTG 1 cut(s) 488
PmlI CACGTG 1 cut(s) 488
PpsI GAGTC 1 cut(s) 764
Ppu21I YACGTR 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 729
PspCI CACGTG 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 729
PspLI CGTACG 1 cut(s) 820
PspN4I GGNNCC 3 cut(s) 21, 102, 624
PspPI GGNCC 1 cut(s) 20
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 4 cut(s) 822, 952, 972, 979
RsaNI GTAC 4 cut(s) 821, 951, 971, 978
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 4 cut(s) 467, 534, 579, 917
SatI GCNGC 2 cut(s) 112, 888
Sau3AI GATC 5 cut(s) 127, 400, 706, 748, 754
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 2 cut(s) 50, 72
SfaNI GCATC 1 cut(s) 709
SfcI CTRYAG 1 cut(s) 109
SfoI GGCGCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 762
SpeI ACTAGT 1 cut(s) 529
SphI GCATGC 1 cut(s) 428
SsiI CCGC 1 cut(s) 887
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 2 cut(s) 195, 530
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 729
TaaI ACNGT 5 cut(s) 202, 382, 448, 740, 820
TaiI ACGT 3 cut(s) 375, 490, 994
TaqI TCGA 4 cut(s) 72, 443, 450, 786
TaqII GACCGA 1 cut(s) 512
TatI WGTACW 1 cut(s) 950
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 2 cut(s) 77, 363
Tru1I TTAA 4 cut(s) 467, 534, 579, 917
Tru9I TTAA 4 cut(s) 467, 534, 579, 917
TscAI CASTG 4 cut(s) 96, 145, 745, 837
TseFI GTSAC 2 cut(s) 136, 382
TseI GCWGC 1 cut(s) 111
Tsp45I GTSAC 2 cut(s) 136, 382
TspDTI ATGAA 4 cut(s) 196, 489, 514, 858
TspGWI ACGGA 4 cut(s) 422, 719, 816, 988
TspRI CASTG 4 cut(s) 96, 145, 745, 837
XapI RAATTY 2 cut(s) 456, 506
XceI RCATGY 1 cut(s) 428
XspI CTAG 2 cut(s) 195, 530
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.