Rmu_sc0002899.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002899.1
OG0002487
Physical Location & Seq
Reverse (-)
21109 .. 31687
10579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1263 bp
atgaatcaagaccaagcgaagataacctcactctgtgtcgctaatggccgagttcggaaacagaaccagagagctgtggagaagaagaagaagaagaagaagaaggggagcttctctttcttccgtctgcaaaaaccttcgtttgagctatctggaaaacttgctgcggaaaccaatagattcagggggttcctgatggattctgaagcagaagctcttgaggagaagctgacgtctttgtttggtcagctccgagctgagtgtgctattcttgaaagagtggtctacaagaacaagaaccagcatagacgttcctcgtacttccagtacctaatgaaggtaaggagggatttgaggcttttacaatcaactaagttggaggagattttgggctgctgtttccaaagtatcactggaaagagacccaagcaaaaggtgcatctattagaaagtttgaagagaagaaaatgtgaaagtggaaaatataatttcatggaacgacttctgggagctgcacgtcttttatcacagatggttgaaccaatgttgaaggctgctattcagatatctgcattactggctcgatcttttttcatgggattctctttgactatcttagctttgcttgcacgacttcgagttttggttcaacagattctgcttgatgttgtttcagtattcaacatggtttcttctctctcccaaaagaagcaatcagttcaaataaatcaagaaggagttgaggtcttcagggagttttaccctacacaagaggattttatcactctggagtgcgtgtggaaatctgataaatttgacttggttgagaggacacaaaagagccagattgcagtgtcagggcacacttctgcggcgggtagtatcccagtcacctggacacctcccctccctccttgggttaagattaacactgacagatcattccgagatacggataatgcgggcttcagtggtattgcccgtggaccagaggactcggctgtggtggtaaggtatttcacagccccaagtcttgtcccttggaggctgcgcattgaatggtcaaatgggatggctttagcgagacaattgcagctacgtgtcactcatatcttttgggaagggaatgccgtggtagacgcgttggataactttggtgcatcacatgaaggtacgcttagatgggattcagtgcctcgtttcttgtcttctgcttttggctgtgatcaagcgtcatggccaatctacaggtctgcctactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

420

Amino Acids

47.95

Weight (kDa)

9.89

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 71 - 228 6.7e-15 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 1052
AccI GTMKAC 2 cut(s) 285, 1137
AccII CGCG 1 cut(s) 1142
AciI CCGC 4 cut(s) 167, 872, 875, 962
AcoI YGGCCR 2 cut(s) 46, 1238
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 3 cut(s) 225, 733, 952
AcyI GRCGYC 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 3 cut(s) 320, 329, 1174
AfiI CCNNNNNNNGG 3 cut(s) 337, 916, 952
AflIII ACRYGT 2 cut(s) 1099, 1140
AgsI TTSAA 8 cut(s) 275, 457, 539, 550, 650, 682, 722, 1058
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 1 cut(s) 893
Alw26I GTCTC 2 cut(s) 415, 1078
AlwNI CAGNNNCTG 1 cut(s) 658
AoxI GGCC 2 cut(s) 46, 1238
ApeKI GCWGC 6 cut(s) 164, 393, 512, 554, 1048, 1093
ApoI RAATTY 1 cut(s) 812
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 1053
AspS9I GGNCC 1 cut(s) 986
AsuHPI GGTGA 1 cut(s) 883
AvaII GGWCC 1 cut(s) 986
BaeGI GKGCMC 1 cut(s) 864
BalI TGGCCA 1 cut(s) 1240
BbsI GAAGAC 2 cut(s) 739, 1200
BbvI GCAGC 6 cut(s) 151, 380, 499, 541, 1035, 1105
BccI CCATC 4 cut(s) 190, 526, 1066, 1176
BceAI ACGGC 1 cut(s) 1115
BcgI CGANNNNNNTGC 2 cut(s) 1072, 1106
BciT130I CCWGG 1 cut(s) 895
BciVI GTATCC 1 cut(s) 893
BclI TGATCA 1 cut(s) 1225
BcoDI GTCTC 2 cut(s) 415, 1078
BfmI CTRYAG 1 cut(s) 1246
BfuI GTATCC 1 cut(s) 893
BisI GCNGC 7 cut(s) 165, 394, 513, 555, 873, 1049, 1094
BlsI GCNGC 7 cut(s) 166, 395, 514, 556, 874, 1050, 1095
Bme1390I CCNGG 1 cut(s) 895
Bme18I GGWCC 1 cut(s) 986
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 895
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 2 cut(s) 448, 1169
BmuI ACTGGG 1 cut(s) 881
BpiI GAAGAC 2 cut(s) 739, 1200
BpmI CTGGAG 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 1100
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 914, 982, 1040, 1131
BsaXI ACNNNNNCTCC 6 cut(s) 729, 759, 782, 812, 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 916, 952
Bse1I ACTGG 4 cut(s) 325, 418, 582, 887
BseBI CCWGG 1 cut(s) 895
BseDI CCNNGG 4 cut(s) 914, 982, 1040, 1131
BseGI GGATG 1 cut(s) 1077
BseLI CCNNNNNNNGG 3 cut(s) 337, 916, 952
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 4 cut(s) 325, 418, 582, 887
BseRI GAGGAG 2 cut(s) 236, 395
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 6 cut(s) 151, 380, 499, 541, 1035, 1105
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 1142
BshFI GGCC 2 cut(s) 48, 1240
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 3 cut(s) 337, 916, 952
BsmAI GTCTC 2 cut(s) 415, 1078
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 2 cut(s) 48, 1240
Bso31I GGTCTC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 864
Bsp143I GATC 3 cut(s) 584, 938, 1225
BspACI CCGC 4 cut(s) 167, 872, 875, 962
BspANI GGCC 2 cut(s) 48, 1240
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 1142
BspLI GGNNCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 415
BsrI ACTGG 4 cut(s) 325, 418, 582, 887
BssECI CCNNGG 4 cut(s) 914, 982, 1040, 1131
BssMI GATC 3 cut(s) 584, 938, 1225
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 914, 1040
Bst2UI CCWGG 1 cut(s) 895
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 436
BstBAI YACGTR 1 cut(s) 1100
BstC8I GCNNGC 2 cut(s) 627, 964
BstDEI CTNAG 4 cut(s) 258, 372, 616, 1178
BstDSI CCRYGG 2 cut(s) 982, 1131
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 1077
BstFNI CGCG 1 cut(s) 1142
BstHHI GCGC 1 cut(s) 1053
BstKTI GATC 3 cut(s) 587, 941, 1228
BstMAI GTCTC 2 cut(s) 415, 1078
BstMBI GATC 3 cut(s) 584, 938, 1225
BstMWI GCNNNNNNNGC 4 cut(s) 263, 436, 578, 626
BstNI CCWGG 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 893
BstSFI CTRYAG 1 cut(s) 1246
BstSLI GKGCMC 1 cut(s) 864
BstUI CGCG 1 cut(s) 1142
BstV1I GCAGC 6 cut(s) 151, 380, 499, 541, 1035, 1105
BstV2I GAAGAC 2 cut(s) 739, 1200
BstXI CCANNNNNNTGG 1 cut(s) 894
BsuI GTATCC 1 cut(s) 893
BsuRI GGCC 2 cut(s) 48, 1240
BtgI CCRYGG 2 cut(s) 982, 1131
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 1 cut(s) 1077
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 5 cut(s) 411, 858, 930, 976, 1197
Cac8I GCNNGC 2 cut(s) 627, 964
CaiI CAGNNNCTG 1 cut(s) 658
CfoI GCGC 1 cut(s) 1053
Cfr13I GGNCC 1 cut(s) 986
CseI GACGC 2 cut(s) 1148, 1221
Csp6I GTAC 3 cut(s) 319, 328, 1173
CviAII CATG 5 cut(s) 493, 595, 685, 1166, 1236
CviQI GTAC 3 cut(s) 319, 328, 1173
DdeI CTNAG 4 cut(s) 258, 372, 616, 1178
DpnI GATC 3 cut(s) 586, 940, 1227
DpnII GATC 3 cut(s) 584, 938, 1225
DraIII CACNNNGTG 1 cut(s) 35
EaeI YGGCCR 2 cut(s) 46, 1238
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 914, 1040
Eco31I GGTCTC 1 cut(s) 415
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 986
Eco57I CTGAAG 3 cut(s) 225, 733, 952
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 893
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 914, 1040
ErhI CCWWGG 2 cut(s) 914, 1040
FaeI CATG 5 cut(s) 496, 598, 688, 1169, 1239
FaiI YATR 8 cut(s) 306, 486, 494, 596, 686, 1110, 1167, 1237
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 1161, 1193
FaqI GGGAC 1 cut(s) 1022
FatI CATG 5 cut(s) 492, 594, 684, 1165, 1235
FauI CCCGC 2 cut(s) 868, 955
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 2 cut(s) 285, 1137
Fnu4HI GCNGC 7 cut(s) 165, 394, 513, 555, 873, 1049, 1094
FokI GGATG 1 cut(s) 1084
Fsp4HI GCNGC 7 cut(s) 165, 394, 513, 555, 873, 1049, 1094
FspI TGCGCA 1 cut(s) 1052
GlaI GCGC 1 cut(s) 1052
GluI GCNGC 7 cut(s) 165, 394, 513, 555, 873, 1049, 1094
GsuI CTGGAG 1 cut(s) 809
HaeIII GGCC 2 cut(s) 48, 1240
HgaI GACGC 2 cut(s) 1148, 1221
HhaI GCGC 1 cut(s) 1053
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 5 cut(s) 496, 598, 688, 1169, 1239
Hin6I GCGC 1 cut(s) 1051
HinP1I GCGC 1 cut(s) 1051
HinfI GANTC 7 cut(s) 4, 180, 200, 600, 655, 995, 1187
HphI GGTGA 1 cut(s) 883
Hpy166II GTNNAC 3 cut(s) 286, 986, 1138
Hpy188I TCNGA 6 cut(s) 57, 205, 254, 564, 808, 947
Hpy188III TCNNGA 7 cut(s) 8, 153, 193, 218, 272, 731, 788
Hpy8I GTNNAC 3 cut(s) 286, 986, 1138
HpyAV CCTTC 7 cut(s) 97, 147, 331, 544, 728, 1115, 1163
HpyCH4IV ACGT 4 cut(s) 233, 310, 517, 1099
HpyCH4V TGCA 8 cut(s) 130, 439, 515, 572, 629, 851, 1093, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 436, 578, 626
HpyF3I CTNAG 4 cut(s) 258, 372, 616, 1178
HpySE526I ACGT 4 cut(s) 233, 310, 517, 1099
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 5 cut(s) 496, 598, 688, 1169, 1239
HspAI GCGC 1 cut(s) 1051
Ksp22I TGATCA 1 cut(s) 1225
Kzo9I GATC 3 cut(s) 584, 938, 1225
LmnI GCTCC 3 cut(s) 108, 255, 509
Lsp1109I GCAGC 6 cut(s) 151, 380, 499, 541, 1035, 1105
LweI GCATC 2 cut(s) 448, 1169
MaeII ACGT 4 cut(s) 233, 310, 517, 1099
MaeIII GTNAC 2 cut(s) 889, 1102
MalI GATC 3 cut(s) 586, 940, 1227
MboI GATC 3 cut(s) 584, 938, 1225
MfeI CAATTG 1 cut(s) 1088
MhlI GDGCHC 1 cut(s) 864
MlsI TGGCCA 1 cut(s) 1240
MluCI AATT 3 cut(s) 487, 812, 1088
MluI ACGCGT 1 cut(s) 1140
MluNI TGGCCA 1 cut(s) 1240
MlyI GAGTC 1 cut(s) 989
MmeI TCCRAC 2 cut(s) 357, 1125
Mox20I TGGCCA 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 1240
MseI TTAA 2 cut(s) 921, 927
Msp20I TGGCCA 1 cut(s) 1240
MspR9I CCNGG 1 cut(s) 895
MunI CAATTG 1 cut(s) 1088
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 1 cut(s) 895
MvnI CGCG 1 cut(s) 1142
MwoI GCNNNNNNNGC 4 cut(s) 263, 436, 578, 626
NdeII GATC 3 cut(s) 584, 938, 1225
NlaIII CATG 5 cut(s) 496, 598, 688, 1169, 1239
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 2 cut(s) 74, 977
NmuCI GTSAC 2 cut(s) 889, 1102
NsbI TGCGCA 1 cut(s) 1052
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 6 cut(s) 4, 180, 200, 600, 655, 1187
PkrI GCNGC 7 cut(s) 166, 395, 514, 556, 874, 1050, 1095
PleI GAGTC 1 cut(s) 989
PpsI GAGTC 1 cut(s) 989
Ppu21I YACGTR 1 cut(s) 1100
Psp6I CCWGG 1 cut(s) 893
PspGI CCWGG 1 cut(s) 893
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 986
PstNI CAGNNNCTG 1 cut(s) 658
RsaI GTAC 3 cut(s) 320, 329, 1174
RsaNI GTAC 3 cut(s) 319, 328, 1173
SaqAI TTAA 2 cut(s) 921, 927
SatI GCNGC 7 cut(s) 165, 394, 513, 555, 873, 1049, 1094
Sau3AI GATC 3 cut(s) 584, 938, 1225
Sau96I GGNCC 1 cut(s) 986
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 1 cut(s) 895
SduI GDGCHC 1 cut(s) 864
SfaNI GCATC 2 cut(s) 448, 1169
SfcI CTRYAG 1 cut(s) 1246
SinI GGWCC 1 cut(s) 986
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 487, 812, 1088
SsiI CCGC 4 cut(s) 167, 872, 875, 962
StyD4I CCNGG 1 cut(s) 893
StyI CCWWGG 2 cut(s) 914, 1040
TaiI ACGT 4 cut(s) 236, 313, 520, 1102
TaqI TCGA 2 cut(s) 583, 637
TasI AATT 3 cut(s) 487, 812, 1088
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 6 cut(s) 4, 180, 200, 600, 655, 1187
Tru1I TTAA 2 cut(s) 921, 927
Tru9I TTAA 2 cut(s) 921, 927
TscAI CASTG 5 cut(s) 418, 858, 937, 976, 1197
TseFI GTSAC 2 cut(s) 889, 1102
TseI GCWGC 6 cut(s) 164, 393, 512, 554, 1048, 1093
Tsp45I GTSAC 2 cut(s) 889, 1102
TspDTI ATGAA 5 cut(s) 17, 350, 481, 583, 1182
TspGWI ACGGA 2 cut(s) 113, 968
TspRI CASTG 5 cut(s) 418, 858, 937, 976, 1197
VpaK11BI GGWCC 1 cut(s) 986
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmiI GTMKAC 2 cut(s) 285, 1137
XmnI GAANNNNTTC 1 cut(s) 501
ZraI GACGTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.