Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003729.1

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

29872 .. 33796

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgaaccggtggaatatttgctgcgagttgtatggagctttcggtggccggttcgataggtttccggcctattcttggggtgccgccgccggttctggattcctagaatcgagttcttcaaggtgtgaggtggaggcagaaaaggcttcaagtgtggttcgggtcggtaaccgcattttaggtacaaaatgcccacccatactcctctctgtcctcctcccatcctttctcttctatttgttcctcaacccacctcaccgcaatccaaaaacccttctctcctctgctaattgcagcaagctccaccccttctatgccgctagaaaaacgtccccgagaccgtatccgtccctgagacatgactacggtgatttggacactagattgaccccgtctttttcaaagacaaaggagtggggagatccctcgagattccaccttgggtgccggagcgaaggttcacagcttcatggtagcgagcataggagagaaaacggtggcgaaaccactacaacacccctcgacggcggtgttgttccttatggagatggcaatgaatttgtgatcggtgttcaccgatttgggctgggctccctgtttaggctactgtttgctggaattccattatccaacctcgatgactacccgatcctcgatcttgctatcgacggtgccgacgaggtggacccccacctcaacctagtcaaaggccgctgcggccttgataatttggatgatagcctgaaggggaaggttttggaattgaaggaagagttggactctgaatttgttagtgccctcaagtccttggggttggatgtggagataagatcaaaagaatcaattgagcaaactttgccctcagaagtaaaggccaagattgaagtcaaggccatattttttttctgctgggttcaagaacatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

ACCA

Protein Analysis

309

Amino Acids

34.25

Weight (kDa)

5.89

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	205 - 240	1.9e-09	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	80, 444, 671
AciI	CCGC	8 cut(s)	84, 87, 172, 259, 318, 528, 712, 717
AclWI	GGATC	2 cut(s)	416, 643
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	3 cut(s)	557, 618, 785
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	75, 524, 600
AgeI	ACCGGT	1 cut(s)	6
AgsI	TTSAA	6 cut(s)	120, 150, 402, 766, 884, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AloI	GAACNNNNNNTCC	2 cut(s)	442, 474
AluBI	AGCT	3 cut(s)	38, 301, 466
AluI	AGCT	3 cut(s)	38, 301, 466
Alw26I	GTCTC	2 cut(s)	331, 349
AlwI	GGATC	2 cut(s)	416, 643
Ama87I	CYCGRG	2 cut(s)	334, 427
AoxI	GGCC	6 cut(s)	46, 66, 709, 718, 873, 891
ApeKI	GCWGC	3 cut(s)	21, 294, 714
ApoI	RAATTY	3 cut(s)	557, 618, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
AsiGI	ACCGGT	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	685
AsuHPI	GGTGA	3 cut(s)	248, 380, 566
AvaI	CYCGRG	2 cut(s)	334, 427
AvaII	GGWCC	1 cut(s)	685
BaeGI	GKGCMC	1 cut(s)	799
BanI	GGYRCC	3 cut(s)	80, 444, 671
BanII	GRGCYC	1 cut(s)	593
BbvI	GCAGC	3 cut(s)	8, 306, 701
BccI	CCATC	2 cut(s)	229, 542
BceAI	ACGGC	1 cut(s)	541
BciVI	GTATCC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	331, 349
BfaI	CTAG	4 cut(s)	104, 321, 381, 701
BfuI	GTATCC	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	717
BisI	GCNGC	8 cut(s)	22, 84, 87, 295, 318, 712, 715, 718
BlsI	GCNGC	8 cut(s)	23, 85, 88, 296, 319, 713, 716, 719
Bme18I	GGWCC	1 cut(s)	685
BmeT110I	CYCGRG	2 cut(s)	334, 427
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	5 cut(s)	82, 446, 592, 673, 687
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	439, 807
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 442, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 524, 600
Bse118I	RCCGGY	3 cut(s)	6, 48, 89
Bse3DI	GCAATG	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	439, 807
BseGI	GGATG	3 cut(s)	221, 739, 823
BseLI	CCNNNNNNNGG	3 cut(s)	75, 524, 600
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	344, 876
BseRI	GAGGAG	3 cut(s)	194, 206, 271
BseSI	GKGCMC	1 cut(s)	799
BseXI	GCAGC	3 cut(s)	8, 306, 701
BseYI	CCCAGC	2 cut(s)	586, 909
BshFI	GGCC	6 cut(s)	48, 68, 711, 720, 875, 893
BshNI	GGYRCC	3 cut(s)	80, 444, 671
BshTI	ACCGGT	1 cut(s)	6
BsiHKCI	CYCGRG	2 cut(s)	334, 427
BsiSI	CCGG	5 cut(s)	7, 49, 65, 90, 448
BslFI	GGGAC	2 cut(s)	316, 334
BslI	CCNNNNNNNGG	3 cut(s)	75, 524, 600
BsmAI	GTCTC	2 cut(s)	331, 349
BsmFI	GGGAC	2 cut(s)	316, 334
BsnI	GGCC	6 cut(s)	48, 68, 711, 720, 875, 893
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	2 cut(s)	334, 427
Bsp1286I	GDGCHC	2 cut(s)	593, 799
Bsp143I	GATC	5 cut(s)	421, 564, 648, 655, 830
BspACI	CCGC	8 cut(s)	84, 87, 172, 259, 318, 528, 712, 717
BspANI	GGCC	6 cut(s)	48, 68, 711, 720, 875, 893
BspCNI	CTCAG	2 cut(s)	345, 875
BspLI	GGNNCC	5 cut(s)	82, 446, 592, 673, 687
BspPI	GGATC	2 cut(s)	416, 643
BspT107I	GGYRCC	3 cut(s)	80, 444, 671
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	3 cut(s)	6, 48, 89
BssAI	RCCGGY	3 cut(s)	6, 48, 89
BssECI	CCNNGG	2 cut(s)	439, 807
BssMI	GATC	5 cut(s)	421, 564, 648, 655, 830
BssT1I	CCWWGG	2 cut(s)	439, 807
Bst4CI	ACNGT	5 cut(s)	342, 368, 497, 609, 671
Bst6I	CTCTTC	2 cut(s)	236, 765
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstC8I	GCNNGC	2 cut(s)	299, 479
BstDEI	CTNAG	2 cut(s)	353, 862
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	221, 739, 823
BstKTI	GATC	5 cut(s)	424, 567, 651, 658, 833
BstMAI	GTCTC	2 cut(s)	331, 349
BstMBI	GATC	5 cut(s)	421, 564, 648, 655, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 717, 856
BstPI	GGTNACC	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	799
BstV1I	GCAGC	3 cut(s)	8, 306, 701
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	6 cut(s)	48, 68, 711, 720, 875, 893
BtsCI	GGATG	3 cut(s)	221, 739, 823
Cac8I	GCNNGC	2 cut(s)	299, 479
Cfr10I	RCCGGY	3 cut(s)	6, 48, 89
Cfr13I	GGNCC	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	6
CviAII	CATG	3 cut(s)	359, 470, 923
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	353, 862
DpnI	GATC	5 cut(s)	423, 566, 650, 657, 832
DpnII	GATC	5 cut(s)	421, 564, 648, 655, 830
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	236, 765
EarI	CTCTTC	2 cut(s)	236, 765
Eco130I	CCWWGG	2 cut(s)	439, 807
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	764
Eco88I	CYCGRG	2 cut(s)	334, 427
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	618
EcoT14I	CCWWGG	2 cut(s)	439, 807
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	2 cut(s)	439, 807
FaeI	CATG	3 cut(s)	362, 473, 926
FaiI	YATR	9 cut(s)	33, 200, 315, 360, 471, 483, 543, 896, 924
FaqI	GGGAC	2 cut(s)	316, 334
FatI	CATG	3 cut(s)	358, 469, 922
Fnu4HI	GCNGC	8 cut(s)	22, 84, 87, 295, 318, 712, 715, 718
FokI	GGATG	3 cut(s)	208, 746, 830
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	8 cut(s)	22, 84, 87, 295, 318, 712, 715, 718
FspBI	CTAG	4 cut(s)	104, 321, 381, 701
GluI	GCNGC	8 cut(s)	22, 84, 87, 295, 318, 712, 715, 718
GsaI	CCCAGC	2 cut(s)	590, 913
HaeIII	GGCC	6 cut(s)	48, 68, 711, 720, 875, 893
HapII	CCGG	5 cut(s)	7, 49, 65, 90, 448
Hin1II	CATG	3 cut(s)	362, 473, 926
HinfI	GANTC	5 cut(s)	99, 107, 432, 779, 839
HpaII	CCGG	5 cut(s)	7, 49, 65, 90, 448
HphI	GGTGA	3 cut(s)	248, 380, 566
Hpy166II	GTNNAC	3 cut(s)	461, 574, 685
Hpy188I	TCNGA	2 cut(s)	784, 865
Hpy188III	TCNNGA	3 cut(s)	96, 429, 917
Hpy8I	GTNNAC	3 cut(s)	461, 574, 685
Hpy99I	CGWCG	3 cut(s)	527, 671, 680
HpyAV	CCTTC	6 cut(s)	284, 319, 449, 739, 745, 760
HpyCH4III	ACNGT	5 cut(s)	342, 368, 497, 609, 671
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 717, 856
HpyF3I	CTNAG	2 cut(s)	353, 862
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	362, 473, 926
Kzo9I	GATC	5 cut(s)	421, 564, 648, 655, 830
LmnI	GCTCC	4 cut(s)	35, 306, 450, 596
Lsp1109I	GCAGC	3 cut(s)	8, 306, 701
MaeI	CTAG	4 cut(s)	104, 321, 381, 701
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	423, 566, 650, 657, 832
MboI	GATC	5 cut(s)	421, 564, 648, 655, 830
MboII	GAAGA	3 cut(s)	108, 223, 782
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	593, 799
MluCI	AATT	7 cut(s)	289, 557, 618, 727, 761, 785, 843
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	3 cut(s)	654, 756, 795
MspA1I	CMGCKG	1 cut(s)	714
MspI	CCGG	5 cut(s)	7, 49, 65, 90, 448
MunI	CAATTG	1 cut(s)	843
MwoI	GCNNNNNNNGC	3 cut(s)	143, 717, 856
NdeII	GATC	5 cut(s)	421, 564, 648, 655, 830
NlaIII	CATG	3 cut(s)	362, 473, 926
NlaIV	GGNNCC	5 cut(s)	82, 446, 592, 673, 687
PaeR7I	CTCGAG	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	2 cut(s)	672, 675
PfeI	GAWTC	4 cut(s)	99, 107, 432, 839
PflFI	GACNNNGTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	6
PkrI	GCNGC	8 cut(s)	23, 85, 88, 296, 319, 713, 716, 719
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PspEI	GGTNACC	1 cut(s)	167
PspFI	CCCAGC	2 cut(s)	586, 909
PspN4I	GGNNCC	5 cut(s)	82, 446, 592, 673, 687
PspPI	GGNCC	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SatI	GCNGC	8 cut(s)	22, 84, 87, 295, 318, 712, 715, 718
Sau3AI	GATC	5 cut(s)	421, 564, 648, 655, 830
Sau96I	GGNCC	1 cut(s)	685
SchI	GAGTC	1 cut(s)	773
SduI	GDGCHC	2 cut(s)	593, 799
SfiI	GGCCNNNNNGGCC	1 cut(s)	717
Sfr274I	CTCGAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	685
SlaI	CTCGAG	1 cut(s)	427
SmlI	CTYRAG	2 cut(s)	427, 800
SmoI	CTYRAG	2 cut(s)	427, 800
Sse9I	AATT	7 cut(s)	289, 557, 618, 727, 761, 785, 843
SsiI	CCGC	8 cut(s)	84, 87, 172, 259, 318, 528, 712, 717
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	4 cut(s)	104, 321, 381, 701
StyI	CCWWGG	2 cut(s)	439, 807
TaaI	ACNGT	5 cut(s)	342, 368, 497, 609, 671
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	7 cut(s)	54, 110, 428, 522, 636, 654, 666
TasI	AATT	7 cut(s)	289, 557, 618, 727, 761, 785, 843
TauI	GCSGC	5 cut(s)	86, 89, 320, 714, 720
TfiI	GAWTC	4 cut(s)	99, 107, 432, 839
TseI	GCWGC	3 cut(s)	21, 294, 714
TspDTI	ATGAA	3 cut(s)	17, 458, 570
TspGWI	ACGGA	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	3 cut(s)	557, 618, 785
XhoI	CTCGAG	1 cut(s)	427
XspI	CTAG	4 cut(s)	104, 321, 381, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.