Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004110.1

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

31106 .. 31879

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggagcaaggaagaggatgcgaaactcagtgtttggtgagggtgattggcagtccgtggcttctgctttgggaggaagaactggtacgcaatgctctaatagatggaaaaaagcaattcatccaaccaggacaagaaaaggtacgtaagtggactttagaggaagacacatgcctgaccgtggctcatattcttttcggggggactaaaaattggaataaaatagctcagttggtgtggaggcgaactcaggtacaatgtcgagataggtttgtcaactctttagaaccttctttgaagtttggtgaatggactgaagaagaagactcgatcctgagagcagcaattggagagcatggacattgctggtcaaaagtttctgcctgtgtacctcagcggactgataatatgtgctggaggagatggaaggtgttgtttccagaggaagtgctggtgctcagagaagagaggagaatacgtaaagctgctcttatctgcaattttgttgactgcgagaaagaacgtccagctcttggccctaatgattttcttgtaccagaggataattcaacaaaaactttaacttttcctaggaagactgggaatataaaaagaggatcacaatctggaaagacaaacaatatctcttcgaattgtcaagttatgaagaagattagatccaagaggcgtaaaaactatgataaaatttgttctaatgaggctgacatatgtaatggggatgatgcctcagattgggatgatactattgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.71

Weight (kDa)

8.57

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 93	2.5e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	51 - 107	5.5e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	102 - 143	7.5e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	104 - 147	7.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	533
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	3 cut(s)	325, 625, 672
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	5 cut(s)	87, 144, 255, 390, 555
AfiI	CCNNNNNNNGG	3 cut(s)	181, 533, 753
AgsI	TTSAA	2 cut(s)	298, 570
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	227, 485, 530
AluI	AGCT	3 cut(s)	227, 485, 530
Alw21I	GWGCWC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	325, 625, 672
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	2 cut(s)	341, 485
ApoI	RAATTY	1 cut(s)	705
AspA2I	CCTAGG	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	3 cut(s)	49, 55, 317
AsuII	TTCGAA	1 cut(s)	650
AvrII	CCTAGG	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BbsI	GAAGAC	3 cut(s)	171, 330, 602
Bbv12I	GWGCWC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	353, 472
BccI	CCATC	2 cut(s)	98, 417
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	591
BisI	GCNGC	2 cut(s)	342, 486
BlnI	CCTAGG	1 cut(s)	590
BlsI	GCNGC	2 cut(s)	343, 487
Bme1390I	CCNGG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	8, 733
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	3 cut(s)	171, 330, 602
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpmI	CTGGAG	1 cut(s)	436
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	650
BsaAI	YACGTR	2 cut(s)	146, 479
BsaBI	GATNNNNATC	1 cut(s)	622
BsaJI	CCNNGG	3 cut(s)	56, 180, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 533, 753
Bse1I	ACTGG	2 cut(s)	87, 604
Bse3DI	GCAATG	2 cut(s)	97, 361
Bse8I	GATNNNNATC	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	3 cut(s)	56, 180, 590
BseGI	GGATG	4 cut(s)	23, 120, 745, 763
BseJI	GATNNNNATC	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	181, 533, 753
BseMI	GCAATG	2 cut(s)	97, 361
BseMII	CTCAG	7 cut(s)	41, 242, 263, 326, 407, 472, 762
BseNI	ACTGG	2 cut(s)	87, 604
BseRI	GAGGAG	2 cut(s)	433, 484
BseXI	GCAGC	2 cut(s)	353, 472
BshFI	GGCC	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	181, 533, 753
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	330, 617, 677
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	7 cut(s)	40, 241, 262, 327, 406, 471, 761
BspPI	GGATC	3 cut(s)	325, 625, 672
BspT104I	TTCGAA	1 cut(s)	650
BsrDI	GCAATG	2 cut(s)	97, 361
BsrI	ACTGG	2 cut(s)	87, 604
BssECI	CCNNGG	3 cut(s)	56, 180, 590
BssMI	GATC	3 cut(s)	330, 617, 677
BssT1I	CCWWGG	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	7, 459, 652
BstBAI	YACGTR	2 cut(s)	146, 479
BstBI	TTCGAA	1 cut(s)	650
BstDEI	CTNAG	7 cut(s)	27, 228, 249, 335, 393, 458, 748
BstDSI	CCRYGG	2 cut(s)	56, 180
BstF5I	GGATG	4 cut(s)	23, 120, 745, 763
BstKTI	GATC	3 cut(s)	333, 620, 680
BstMBI	GATC	3 cut(s)	330, 617, 677
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	127
BstSNI	TACGTA	2 cut(s)	146, 479
BstV1I	GCAGC	2 cut(s)	353, 472
BstV2I	GAAGAC	3 cut(s)	171, 330, 602
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	537
BtgI	CCRYGG	2 cut(s)	56, 180
BtsCI	GGATG	4 cut(s)	23, 120, 745, 763
BtsIMutI	CAGTG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	536
Csp6I	GTAC	5 cut(s)	86, 143, 254, 389, 554
CviAII	CATG	2 cut(s)	171, 356
CviJI	RGCY	7 cut(s)	61, 185, 227, 485, 530, 537, 722
CviKI_1	RGCY	7 cut(s)	61, 185, 227, 485, 530, 537, 722
CviQI	GTAC	5 cut(s)	86, 143, 254, 389, 554
DdeI	CTNAG	7 cut(s)	27, 228, 249, 335, 393, 458, 748
DpnI	GATC	3 cut(s)	332, 619, 679
DpnII	GATC	3 cut(s)	330, 617, 677
Eam1104I	CTCTTC	3 cut(s)	7, 459, 652
EarI	CTCTTC	3 cut(s)	7, 459, 652
Eco105I	TACGTA	2 cut(s)	146, 479
Eco130I	CCWWGG	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	2 cut(s)	174, 359
FaiI	YATR	9 cut(s)	172, 189, 357, 410, 608, 665, 699, 728, 730
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	170, 355
FauNDI	CATATG	1 cut(s)	728
Fnu4HI	GCNGC	2 cut(s)	342, 486
FokI	GGATG	4 cut(s)	30, 107, 752, 770
Fsp4HI	GCNGC	2 cut(s)	342, 486
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	2 cut(s)	342, 486
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	1 cut(s)	537
Hin1II	CATG	2 cut(s)	174, 359
HincII	GTYRAC	2 cut(s)	277, 508
HindII	GTYRAC	2 cut(s)	277, 508
HinfI	GANTC	1 cut(s)	326
HphI	GGTGA	3 cut(s)	49, 55, 317
Hpy166II	GTNNAC	4 cut(s)	153, 277, 389, 508
Hpy188I	TCNGA	2 cut(s)	461, 751
Hpy188III	TCNNGA	4 cut(s)	263, 334, 440, 627
Hpy8I	GTNNAC	4 cut(s)	153, 277, 389, 508
HpyAV	CCTTC	2 cut(s)	300, 421
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	3 cut(s)	145, 478, 523
HpyCH4V	TGCA	1 cut(s)	498
HpyF3I	CTNAG	7 cut(s)	27, 228, 249, 335, 393, 458, 748
HpySE526I	ACGT	3 cut(s)	145, 478, 523
Hsp92II	CATG	2 cut(s)	174, 359
Kzo9I	GATC	3 cut(s)	330, 617, 677
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	353, 472
LweI	GCATC	2 cut(s)	8, 733
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	3 cut(s)	145, 478, 523
MalI	GATC	3 cut(s)	332, 619, 679
MboI	GATC	3 cut(s)	330, 617, 677
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	7 cut(s)	116, 211, 345, 499, 565, 652, 705
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	3 cut(s)	330, 617, 677
NlaIII	CATG	2 cut(s)	174, 359
NspI	RCATGY	1 cut(s)	174
NspV	TTCGAA	1 cut(s)	650
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	343, 487
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	2 cut(s)	146, 479
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	677
RsaI	GTAC	5 cut(s)	87, 144, 255, 390, 555
RsaNI	GTAC	5 cut(s)	86, 143, 254, 389, 554
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	2 cut(s)	342, 486
Sau3AI	GATC	3 cut(s)	330, 617, 677
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	8, 733
SfuI	TTCGAA	1 cut(s)	650
SnaBI	TACGTA	2 cut(s)	146, 479
Sse9I	AATT	7 cut(s)	116, 211, 345, 499, 565, 652, 705
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	3 cut(s)	148, 481, 526
TaqI	TCGA	3 cut(s)	262, 329, 650
TasI	AATT	7 cut(s)	116, 211, 345, 499, 565, 652, 705
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	2 cut(s)	341, 485
TspDTI	ATGAA	2 cut(s)	109, 680
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	1 cut(s)	174
XmaJI	CCTAGG	1 cut(s)	590
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.