Rmu_sc0005789.1_g000029

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005789.1
OG0002281
Physical Location & Seq
Forward (+)
185967 .. 187103
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
atgtatttgccttttcagtgttctcagttgcatcagacaaacacggttgcaccagaacacaacgaagagattgcagatagagagcagatggtggaccgagactcaaccaagattggagatggagagcagacggaggtggaacaagaactaagcccacccctaaagataagtgggaaaaagcagaagtggatgcttaaaaggcatcgcgcagcatcgtcaagatctgatgaatgcagcagcaccgtcaacacactcacaaagtcccagcaaacaacacaccagagaagcactaggcccatagtcggcttcgggaatcacacaatatgcacagaatggtatgaagatctacccgaaattgtgaaagaaacaatcaaattggctggatttggggacttcataaacgttttgagcaagtggaggcgttttggtacgacggctaataacgagatccttagagtcttggcggagaggtggtgggacaccacacacacatttcactttgataatgttggcgagttcaccatgacaccggaagacttcgctaccattgtgggtgttccggtttgtgggctacaagtggagtatgacgagtttttctcgacgaagcagcaactaatatacgagtattatggtgaagtaatgaccactatcatcgatgaaaatggtaaggtagagtttggccgcatcagagaggaatataaggtttggccaagcacagaccgtacacattcggaacatttgactagggcattcattctttgccttctaggatcaacactgttgtgtgataagacagcctccgggatcctttcttattccccatgtctaagacacatagagtgcattcgaagatacaactggggtggggcggcattgtgtaccttgtatagacacatggataatgtatgcagaggaagcaaaagaattggcggctactggctagcctgggaggtttgtgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
PMD

Protein Analysis

320

Amino Acids

36.91

Weight (kDa)

5.91

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 140 - 304 5.5e-21 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 4 cut(s) 464, 682, 869, 930
AclI AACGTT 1 cut(s) 402
AclWI GGATC 4 cut(s) 442, 778, 799, 812
AcoI YGGCCR 2 cut(s) 679, 707
AfaI GTAC 3 cut(s) 430, 724, 880
AfiI CCNNNNNNNGG 2 cut(s) 302, 566
AjnI CCWGG 1 cut(s) 944
AleI CACNNNNGTG 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 4 cut(s) 442, 778, 799, 812
AoxI GGCC 3 cut(s) 293, 679, 707
ApeKI GCWGC 4 cut(s) 209, 234, 237, 607
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 94, 294
AsuC2I CCSGG 1 cut(s) 802
AsuHPI GGTGA 2 cut(s) 511, 644
AsuII TTCGAA 1 cut(s) 847
AsuNHI GCTAGC 1 cut(s) 940
AvaII GGWCC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 709
BamHI GGATCC 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 221, 246, 249, 619
BccI CCATC 2 cut(s) 82, 113
BceAI ACGGC 1 cut(s) 450
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 946
BcnI CCSGG 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 4 cut(s) 291, 744, 767, 941
BglII AGATCT 2 cut(s) 221, 343
BisI GCNGC 7 cut(s) 210, 235, 238, 608, 682, 870, 931
BlsI GCNGC 7 cut(s) 211, 236, 239, 609, 683, 871, 932
Bme1390I CCNGG 2 cut(s) 802, 946
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 94, 294
BmiI GGNNCC 1 cut(s) 806
BmrFI CCNGG 2 cut(s) 802, 946
BmrI ACTGGG 1 cut(s) 868
BmsI GCATC 5 cut(s) 40, 180, 211, 221, 693
BmtI GCTAGC 1 cut(s) 944
BmuI ACTGGG 1 cut(s) 868
BpiI GAAGAC 1 cut(s) 540
BplI GAGNNNNNCTC 2 cut(s) 581, 613
Bpu14I TTCGAA 1 cut(s) 847
BpuMI CCSGG 1 cut(s) 802
Bsa29I ATCGAT 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 945
BsaWI WCCGGW 2 cut(s) 529, 559
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 566
Bse1I ACTGG 2 cut(s) 863, 941
BseBI CCWGG 1 cut(s) 946
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 945
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 302, 566
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 863, 941
BseXI GCAGC 4 cut(s) 221, 246, 249, 619
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 295, 681, 709
BshVI ATCGAT 1 cut(s) 654
BsiSI CCGG 3 cut(s) 530, 560, 801
BslFI GGGAC 3 cut(s) 247, 404, 491
BslI CCNNNNNNNGG 2 cut(s) 302, 566
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 3 cut(s) 247, 404, 491
BsmI GAATGC 3 cut(s) 236, 749, 843
BsnI GGCC 3 cut(s) 295, 681, 709
Bsp119I TTCGAA 1 cut(s) 847
Bsp143I GATC 5 cut(s) 221, 343, 447, 770, 804
BspACI CCGC 4 cut(s) 464, 682, 869, 930
BspANI GGCC 3 cut(s) 295, 681, 709
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 654
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 806
BspOI GCTAGC 1 cut(s) 944
BspPI GGATC 4 cut(s) 442, 778, 799, 812
BspT104I TTCGAA 1 cut(s) 847
BsrI ACTGG 2 cut(s) 863, 941
BssECI CCNNGG 1 cut(s) 945
BssMI GATC 5 cut(s) 221, 343, 447, 770, 804
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 4 cut(s) 46, 244, 722, 780
Bst6I CTCTTC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 942
BstDEI CTNAG 4 cut(s) 24, 149, 452, 827
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 5 cut(s) 224, 346, 450, 773, 807
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 5 cut(s) 221, 343, 447, 770, 804
BstMWI GCNNNNNNNGC 2 cut(s) 199, 915
BstNI CCWGG 1 cut(s) 946
BstSCI CCNGG 2 cut(s) 800, 944
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 221, 246, 249, 619
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 4 cut(s) 221, 343, 447, 804
BstYI RGATCY 4 cut(s) 221, 343, 447, 804
Bsu15I ATCGAT 1 cut(s) 654
BsuRI GGCC 3 cut(s) 295, 681, 709
BsuTUI ATCGAT 1 cut(s) 654
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 23, 776
Cac8I GCNNGC 1 cut(s) 942
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 94, 294
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 3 cut(s) 429, 723, 879
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 3 cut(s) 523, 822, 895
CviQI GTAC 3 cut(s) 429, 723, 879
DdeI CTNAG 4 cut(s) 24, 149, 452, 827
DpnI GATC 5 cut(s) 223, 345, 449, 772, 806
DpnII GATC 5 cut(s) 221, 343, 447, 770, 804
EaeI YGGCCR 2 cut(s) 679, 707
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 944
FaeI CATG 3 cut(s) 526, 825, 898
FaqI GGGAC 3 cut(s) 247, 404, 491
FatI CATG 3 cut(s) 522, 821, 894
Fnu4HI GCNGC 7 cut(s) 210, 235, 238, 608, 682, 870, 931
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 7 cut(s) 210, 235, 238, 608, 682, 870, 931
FspBI CTAG 4 cut(s) 291, 744, 767, 941
GlaI GCGC 1 cut(s) 208
GluI GCNGC 7 cut(s) 210, 235, 238, 608, 682, 870, 931
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 3 cut(s) 295, 681, 709
HapII CCGG 3 cut(s) 530, 560, 801
HhaI GCGC 1 cut(s) 209
Hin1II CATG 3 cut(s) 526, 825, 898
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 3 cut(s) 101, 313, 456
HpaII CCGG 3 cut(s) 530, 560, 801
HphI GGTGA 2 cut(s) 511, 644
Hpy166II GTNNAC 5 cut(s) 94, 247, 519, 725, 879
Hpy188I TCNGA 4 cut(s) 36, 226, 689, 733
Hpy188III TCNNGA 3 cut(s) 219, 310, 598
Hpy8I GTNNAC 5 cut(s) 94, 247, 519, 725, 879
Hpy99I CGWCG 2 cut(s) 436, 604
HpyAV CCTTC 1 cut(s) 773
HpyCH4III ACNGT 4 cut(s) 46, 244, 722, 780
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 7 cut(s) 31, 50, 74, 234, 327, 843, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 915
HpyF3I CTNAG 4 cut(s) 24, 149, 452, 827
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 3 cut(s) 526, 825, 898
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 5 cut(s) 221, 343, 447, 770, 804
Lsp1109I GCAGC 4 cut(s) 221, 246, 249, 619
LweI GCATC 5 cut(s) 40, 180, 211, 221, 693
MaeI CTAG 4 cut(s) 291, 744, 767, 941
MaeII ACGT 1 cut(s) 402
MalI GATC 5 cut(s) 223, 345, 449, 772, 806
MboI GATC 5 cut(s) 221, 343, 447, 770, 804
MboII GAAGA 4 cut(s) 77, 353, 545, 861
MflI RGATCY 4 cut(s) 221, 343, 447, 804
MlsI TGGCCA 1 cut(s) 709
MluCI AATT 3 cut(s) 354, 374, 924
MluNI TGGCCA 1 cut(s) 709
MlyI GAGTC 2 cut(s) 95, 465
MnlI CCTC 7 cut(s) 127, 411, 462, 685, 808, 905, 943
Mox20I TGGCCA 1 cut(s) 709
MscI TGGCCA 1 cut(s) 709
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 781
Msp20I TGGCCA 1 cut(s) 709
MspI CCGG 3 cut(s) 530, 560, 801
MspR9I CCNGG 2 cut(s) 802, 946
Mva1269I GAATGC 3 cut(s) 236, 749, 843
MvaI CCWGG 1 cut(s) 946
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 199, 915
NciI CCSGG 1 cut(s) 802
NdeII GATC 5 cut(s) 221, 343, 447, 770, 804
NheI GCTAGC 1 cut(s) 940
NlaIII CATG 3 cut(s) 526, 825, 898
NlaIV GGNNCC 1 cut(s) 806
NspV TTCGAA 1 cut(s) 847
OliI CACNNNNGTG 1 cut(s) 781
PctI GAATGC 3 cut(s) 236, 749, 843
PfeI GAWTC 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 800
PkrI GCNGC 7 cut(s) 211, 236, 239, 609, 683, 871, 932
PleI GAGTC 2 cut(s) 95, 464
PpsI GAGTC 2 cut(s) 95, 464
Psp1406I AACGTT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 944
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 1 cut(s) 944
PspN4I GGNNCC 1 cut(s) 806
PspPI GGNCC 2 cut(s) 94, 294
PsuI RGATCY 4 cut(s) 221, 343, 447, 804
RsaI GTAC 3 cut(s) 430, 724, 880
RsaNI GTAC 3 cut(s) 429, 723, 879
RseI CAYNNNNRTG 1 cut(s) 781
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 7 cut(s) 210, 235, 238, 608, 682, 870, 931
Sau3AI GATC 5 cut(s) 221, 343, 447, 770, 804
Sau96I GGNCC 2 cut(s) 94, 294
SchI GAGTC 2 cut(s) 95, 465
ScrFI CCNGG 2 cut(s) 802, 946
SetI ASST 7 cut(s) 138, 405, 473, 672, 705, 884, 954
SfaNI GCATC 5 cut(s) 40, 180, 211, 221, 693
SfuI TTCGAA 1 cut(s) 847
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 781
Sse9I AATT 3 cut(s) 354, 374, 924
SsiI CCGC 4 cut(s) 464, 682, 869, 930
SspMI CTAG 4 cut(s) 291, 744, 767, 941
StyD4I CCNGG 2 cut(s) 800, 944
TaaI ACNGT 4 cut(s) 46, 244, 722, 780
TaiI ACGT 1 cut(s) 405
TaqI TCGA 3 cut(s) 599, 654, 847
TaqII GACCGA 1 cut(s) 111
TasI AATT 3 cut(s) 354, 374, 924
TauI GCSGC 3 cut(s) 684, 872, 933
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 23, 783
TseI GCWGC 4 cut(s) 209, 234, 237, 607
TspDTI ATGAA 5 cut(s) 243, 354, 385, 672, 742
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 23, 783
VpaK11BI GGWCC 1 cut(s) 94
XspI CTAG 4 cut(s) 291, 744, 767, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.