Rmu_sc0006762.1_g000001

Pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006762.1
OG0002996
Physical Location & Seq
Forward (+)
2012 .. 2701
690 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ctgcttggcaactcatcccacattcccactcttgatattctactgacagggggacgtgattcagtatgccgggtttgggatattcgtacccaaacgcatgttcatgcattcttggggcacgacagcacagtttgctcggttttcactagaccaatcgatccccaagttgtcactggctctcacgacgcaaccatcaagttctgggaccttagaggtggaaaagcaatgtcaactctcacacaccataagaaatccgtgcgtgcaatggcgccacatcctaaggatcagcattgttttacttctgtgtcagtagacaacattaagaagttcggatcgttcaaccttccgagaggggaatttttacacgatatgctagctcagcagaacaccatagttaacacaatggcggtcaatggtgatggagttatggccaccggagatgacagtgggagtttgtggttttgggattgggagagtggccataattatcagcaatcccaaacaactgtacagccatgttctctgaatagtgaagctggtatttctgccctttcttatgatgtcactggcagaaggctagttacttgtggagttgacaagacgatcaaaatgtggaaacaagacaaaaacgccacaccagaaactcatcctctcaatttcagtccgcctaaagatatccggcacctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009870 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0010204 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034284 GO:0034641 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071011 GO:0071013 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0080090 GO:0080134 GO:0090304 GO:0098542 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

229

Amino Acids

25.41

Weight (kDa)

7.35

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 12 - 166 3.2e-21 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 12 - 160 1.2e-17 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 12 - 101 1.2e-12 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 12 - 90 1e-11 TEP-1 second beta-propeller
EIF3I PF24805 12 - 207 1.5e-10 EIF3I
Beta-prop_WDR3_1st PF25173 13 - 107 2.9e-16 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 13 - 173 1.3e-16 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 13 - 168 3.5e-10 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 13 - 114 1.2e-08 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 13 - 207 2.6e-11 WDR36/Utp21 first beta-propeller
WD40_Gbeta PF25391 14 - 105 9.4e-12 G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd PF23393 14 - 113 3.8e-09 WDR90/POC16, second beta-propeller
Beta-prop_WDR75_1st PF23869 18 - 115 2.5e-06 WD repeat-containing protein 75 first beta-propeller
Beta-prop_EML PF23409 21 - 214 1.3e-12 Echinoderm microtubule-associated protein first beta-propeller
WDR55 PF24796 75 - 210 1.5e-08 WDR55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 268, 681
AccI GTMKAC 1 cut(s) 312
AciI CCGC 2 cut(s) 407, 665
AclWI GGATC 3 cut(s) 152, 291, 340
AcoI YGGCCR 2 cut(s) 429, 478
AcsI RAATTY 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 2 cut(s) 88, 510
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 340
AjiI CACGTC 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 377, 536
AluI AGCT 2 cut(s) 377, 536
AlwI GGATC 3 cut(s) 152, 291, 340
AoxI GGCC 2 cut(s) 429, 478
ApoI RAATTY 1 cut(s) 356
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 428
AsuNHI GCTAGC 1 cut(s) 373
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 120
BalI TGGCCA 2 cut(s) 431, 480
BanI GGYRCC 2 cut(s) 268, 681
BarI GAAGNNNNNNTAC 2 cut(s) 565, 597
BccI CCATC 2 cut(s) 200, 413
BcnI CCSGG 1 cut(s) 71
BfaI CTAG 4 cut(s) 147, 374, 578, 688
BfoI RGCGCY 1 cut(s) 272
BlpI GCTNAGC 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 3 cut(s) 206, 270, 683
BmrFI CCNGG 1 cut(s) 71
BmtI GCTAGC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 269
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 178, 571
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 2 cut(s) 231, 270
BseCI ATCGAT 1 cut(s) 156
BseGI GGATG 3 cut(s) 14, 274, 646
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 231, 270
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 2 cut(s) 178, 571
BseSI GKGCMC 1 cut(s) 120
BshFI GGCC 2 cut(s) 431, 480
BshNI GGYRCC 2 cut(s) 268, 681
BshVI ATCGAT 1 cut(s) 156
BsiSI CCGG 3 cut(s) 70, 435, 679
BslFI GGGAC 2 cut(s) 66, 218
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 2 cut(s) 66, 218
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 431, 480
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 157, 283, 332, 603
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 2 cut(s) 407, 665
BspANI GGCC 2 cut(s) 431, 480
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 156
BspLI GGNNCC 3 cut(s) 206, 270, 683
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 3 cut(s) 152, 291, 340
BspT107I GGYRCC 2 cut(s) 268, 681
BsrDI GCAATG 2 cut(s) 231, 270
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 178, 571
BssMI GATC 4 cut(s) 157, 283, 332, 603
BssNI GRCGYC 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 130, 446, 508
BstACI GRCGYC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 261, 375
BstDEI CTNAG 3 cut(s) 209, 279, 378
BstF5I GGATG 3 cut(s) 14, 274, 646
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 4 cut(s) 160, 286, 335, 606
BstMBI GATC 4 cut(s) 157, 283, 332, 603
BstMWI GCNNNNNNNGC 2 cut(s) 132, 379
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 431, 480
BsuTUI ATCGAT 1 cut(s) 156
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 3 cut(s) 14, 274, 646
BtsIMutI CAGTG 3 cut(s) 171, 451, 564
Cac8I GCNNGC 2 cut(s) 261, 375
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 87, 509
CviAII CATG 3 cut(s) 98, 104, 516
CviJI RGCY 7 cut(s) 177, 377, 431, 480, 514, 536, 577
CviKI_1 RGCY 7 cut(s) 177, 377, 431, 480, 514, 536, 577
CviQI GTAC 2 cut(s) 87, 509
DdeI CTNAG 3 cut(s) 209, 279, 378
DinI GGCGCC 1 cut(s) 270
DpnI GATC 4 cut(s) 159, 285, 334, 605
DpnII GATC 4 cut(s) 157, 283, 332, 603
EaeI YGGCCR 2 cut(s) 429, 478
EciI GGCGGA 1 cut(s) 654
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 205
EcoRV GATATC 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 109
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 3 cut(s) 101, 107, 519
FaqI GGGAC 2 cut(s) 66, 218
FatI CATG 3 cut(s) 97, 103, 515
FblI GTMKAC 1 cut(s) 312
FokI GGATG 2 cut(s) 261, 633
FspBI CTAG 4 cut(s) 147, 374, 578, 688
GlaI GCGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 431, 480
HapII CCGG 3 cut(s) 70, 435, 679
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 3 cut(s) 101, 107, 519
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 3 cut(s) 231, 397, 595
HindII GTYRAC 3 cut(s) 231, 397, 595
HinfI GANTC 1 cut(s) 59
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 3 cut(s) 70, 435, 679
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 4 cut(s) 231, 313, 397, 595
Hpy188I TCNGA 3 cut(s) 332, 348, 525
Hpy188III TCNNGA 2 cut(s) 32, 182
Hpy8I GTNNAC 4 cut(s) 231, 313, 397, 595
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 353, 567
HpyCH4III ACNGT 3 cut(s) 130, 446, 508
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 107, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 379
HpyF3I CTNAG 3 cut(s) 209, 279, 378
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 3 cut(s) 101, 107, 519
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 4 cut(s) 157, 283, 332, 603
LpnPI CCDG 8 cut(s) 33, 83, 159, 187, 448, 522, 552, 651
MaeI CTAG 4 cut(s) 147, 374, 578, 688
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 169, 562, 580
MalI GATC 4 cut(s) 159, 285, 334, 605
MboI GATC 4 cut(s) 157, 283, 332, 603
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 2 cut(s) 431, 480
MluCI AATT 3 cut(s) 356, 484, 655
MluNI TGGCCA 2 cut(s) 431, 480
Mly113I GGCGCC 1 cut(s) 269
MnlI CCTC 3 cut(s) 206, 344, 660
Mox20I TGGCCA 2 cut(s) 431, 480
Mph1103I ATGCAT 1 cut(s) 109
MscI TGGCCA 2 cut(s) 431, 480
MseI TTAA 2 cut(s) 321, 396
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 2 cut(s) 431, 480
MspI CCGG 3 cut(s) 70, 435, 679
MspR9I CCNGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 132, 379
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 71
NdeII GATC 4 cut(s) 157, 283, 332, 603
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 3 cut(s) 101, 107, 519
NlaIV GGNNCC 3 cut(s) 206, 270, 683
NmuCI GTSAC 2 cut(s) 169, 562
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 101
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 59
PluTI GGCGCC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 206, 270, 683
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 88, 510
RsaNI GTAC 2 cut(s) 87, 509
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 321, 396
Sau3AI GATC 4 cut(s) 157, 283, 332, 603
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 58, 210, 217, 345, 379, 538, 687
SfoI GGCGCC 1 cut(s) 270
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 3 cut(s) 356, 484, 655
SsiI CCGC 2 cut(s) 407, 665
SspDI GGCGCC 1 cut(s) 268
SspMI CTAG 4 cut(s) 147, 374, 578, 688
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 130, 446, 508
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 156
TasI AATT 3 cut(s) 356, 484, 655
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 321, 396
Tru9I TTAA 2 cut(s) 321, 396
TscAI CASTG 3 cut(s) 178, 451, 571
TseFI GTSAC 2 cut(s) 169, 562
Tsp45I GTSAC 2 cut(s) 169, 562
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 3 cut(s) 178, 451, 571
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 4 cut(s) 147, 374, 578, 688
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.