Rmu_sc0006948.1_g000007

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006948.1
OG0002071
Physical Location & Seq
Forward (+)
31723 .. 33239
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
atgaggagagcaccaacctcgtcgcgggattctttgtgccttgtggtgaggacttttgctaagcttcttcaaaatcacacaatcgatactcgacgtcgtagatcgagcaaaacgaaaatcactggcaagtggcgagaacttgctaaaggtcggttcccgaggatactaggactgaagcacgttggcagagggtttggtggcactgacagtcagcttctgaggattctggaaccggagtgtgatcaccgagacctcaaacccaaccccaaccgtccatccacctcgctccaatcaatcacagacgtccatgacctcctccccaagtacggcctcctaaggggtctgttactcgacaacgtaagatcctacattctatctgacgatggaacctttgagatccatctcgaaaacccatgttatgttcactttgatcagttggtgtactacgacaagaacattaaagggaagctgagtttcggctctgtttccgatgtgtcggggattcaagccaagaagctatttctttgggtttccgtgacggggatgcatatggaacaagggtctgattcagttgagttttacgttggggctctgtccgagaaattgcctactaaacagttcgaggatattcctgtatgtaagagcaaggcttgcagaggaggagctagtgttgagtcaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

227

Amino Acids

25.58

Weight (kDa)

9.47

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 102 - 208 6.8e-27 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 97, 306
AccII CGCG 1 cut(s) 25
AciI CCGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 357, 391
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 2 cut(s) 94, 303
AfaI GTAC 2 cut(s) 326, 443
AfiI CCNNNNNNNGG 4 cut(s) 24, 326, 337, 540
AgsI TTSAA 2 cut(s) 71, 506
AluBI AGCT 5 cut(s) 64, 214, 469, 517, 665
AluI AGCT 5 cut(s) 64, 214, 469, 517, 665
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 2 cut(s) 357, 391
AlwNI CAGNNNCTG 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 58, 236
AvaI CYCGRG 1 cut(s) 157
AxyI CCTNAGG 1 cut(s) 335
BanII GRGCYC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 3 cut(s) 283, 377, 408
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 156
BclI TGATCA 2 cut(s) 241, 430
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 167, 666
BfuI GTATCC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 157
BmiI GGNNCC 3 cut(s) 155, 231, 388
BmsI GCATC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 84
BsaHI GRCGYC 2 cut(s) 94, 303
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 326, 337, 540
Bse1I ACTGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 275, 549
BseLI CCNNNNNNNGG 4 cut(s) 24, 326, 337, 540
BseMII CTCAG 2 cut(s) 209, 461
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 4 cut(s) 19, 305, 672, 675
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 4 cut(s) 24, 326, 337, 540
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 330
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 13, 592
Bsp143I GATC 5 cut(s) 101, 241, 362, 396, 430
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 210, 462
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 155, 231, 388
BspPI GGATC 2 cut(s) 357, 391
BspTNI GGTCTC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 5 cut(s) 101, 241, 362, 396, 430
BssNI GRCGYC 2 cut(s) 94, 303
Bst4CI ACNGT 3 cut(s) 209, 272, 618
BstACI GRCGYC 2 cut(s) 94, 303
BstAPI GCANNNNNTGC 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 4 cut(s) 60, 218, 335, 470
BstF5I GGATG 2 cut(s) 275, 549
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 5 cut(s) 104, 244, 365, 399, 433
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 5 cut(s) 101, 241, 362, 396, 430
BstMWI GCNNNNNNNGC 1 cut(s) 651
BstUI CGCG 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 362, 396
BstYI RGATCY 2 cut(s) 362, 396
Bsu15I ATCGAT 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 335
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 330
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 2 cut(s) 275, 549
BtsIMutI CAGTG 2 cut(s) 120, 201
Cac8I GCNNGC 1 cut(s) 652
CaiI CAGNNNCTG 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 325, 442
CviAII CATG 2 cut(s) 308, 414
CviQI GTAC 2 cut(s) 325, 442
DdeI CTNAG 4 cut(s) 60, 218, 335, 470
DpnI GATC 5 cut(s) 103, 243, 364, 398, 432
DpnII GATC 5 cut(s) 101, 241, 362, 396, 430
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 194
Eco81I CCTNAGG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 592
FaeI CATG 2 cut(s) 311, 417
FaiI YATR 6 cut(s) 309, 415, 420, 549, 551, 637
FatI CATG 2 cut(s) 307, 413
FauI CCCGC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 549
FbaI TGATCA 2 cut(s) 241, 430
FokI GGATG 2 cut(s) 262, 556
FriOI GRGCYC 1 cut(s) 592
FspBI CTAG 2 cut(s) 167, 666
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 233
Hin1I GRCGYC 2 cut(s) 94, 303
Hin1II CATG 2 cut(s) 311, 417
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 5 cut(s) 29, 223, 502, 566, 674
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 58, 236
Hpy166II GTNNAC 2 cut(s) 424, 442
Hpy188I TCNGA 5 cut(s) 219, 379, 490, 565, 598
Hpy188III TCNNGA 3 cut(s) 157, 227, 404
Hpy8I GTNNAC 2 cut(s) 424, 442
Hpy99I CGWCG 3 cut(s) 25, 96, 99
HpyCH4III ACNGT 3 cut(s) 209, 272, 618
HpyCH4IV ACGT 5 cut(s) 94, 180, 303, 357, 582
HpyCH4V TGCA 2 cut(s) 547, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 651
HpyF3I CTNAG 4 cut(s) 60, 218, 335, 470
HpySE526I ACGT 5 cut(s) 94, 180, 303, 357, 582
Hsp92I GRCGYC 2 cut(s) 94, 303
Hsp92II CATG 2 cut(s) 311, 417
Ksp22I TGATCA 2 cut(s) 241, 430
Kzo9I GATC 5 cut(s) 101, 241, 362, 396, 430
LmnI GCTCC 2 cut(s) 291, 662
LpnPI CCDG 4 cut(s) 108, 212, 246, 645
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 167, 666
MaeII ACGT 5 cut(s) 94, 180, 303, 357, 582
MaeIII GTNAC 2 cut(s) 345, 535
MalI GATC 5 cut(s) 103, 243, 364, 398, 432
MboI GATC 5 cut(s) 101, 241, 362, 396, 430
MboII GAAGA 1 cut(s) 59
MflI RGATCY 2 cut(s) 362, 396
MhlI GDGCHC 2 cut(s) 13, 592
MluCI AATT 1 cut(s) 602
MlyI GAGTC 1 cut(s) 683
Mph1103I ATGCAT 1 cut(s) 549
MseI TTAA 1 cut(s) 459
MspI CCGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 651
NdeI CATATG 1 cut(s) 549
NdeII GATC 5 cut(s) 101, 241, 362, 396, 430
NlaIII CATG 2 cut(s) 311, 417
NlaIV GGNNCC 3 cut(s) 155, 231, 388
NmuCI GTSAC 1 cut(s) 535
NsiI ATGCAT 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 4 cut(s) 29, 223, 502, 566
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 155, 231, 388
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 362, 396
RsaI GTAC 2 cut(s) 326, 443
RsaNI GTAC 2 cut(s) 325, 442
SaqAI TTAA 1 cut(s) 459
Sau3AI GATC 5 cut(s) 101, 241, 362, 396, 430
SchI GAGTC 1 cut(s) 683
SduI GDGCHC 2 cut(s) 13, 592
SfaNI GCATC 1 cut(s) 534
Sse9I AATT 1 cut(s) 602
SsiI CCGC 1 cut(s) 25
SspMI CTAG 2 cut(s) 167, 666
TaaI ACNGT 3 cut(s) 209, 272, 618
TaiI ACGT 5 cut(s) 97, 183, 306, 360, 585
TaqI TCGA 6 cut(s) 84, 91, 104, 351, 405, 621
TasI AATT 1 cut(s) 602
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 4 cut(s) 29, 223, 502, 566
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 2 cut(s) 127, 208
TseFI GTSAC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 535
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 2 cut(s) 127, 208
XspI CTAG 2 cut(s) 167, 666
ZraI GACGTC 2 cut(s) 95, 304
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.