Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

387277 .. 389808

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATATCGAGCAGAAGCAAGCCGAGATCATTGATCAGCTCGTGAAGCGAGCTTCTACTTGCAAATCCGAGGCTCTGGGCCCGCTCATCATCGAAGCCACATCGCATCCTTCTCTCTTCGCCTTCTCCGAGATTTTGGCTCTACCCAATGTTGCCCAGCTTGAAGGAACCACAGATTCTGTGTACCTGGATCTACTACGCTTGTTTGCCCATGGCACCTGGGGAGACTACAAATGCAATGCCACCCGTCTTCCGCACTTGTCCCCTGACCAAATTCTTAAGCTTAAGCAGCTCACTGTCCTCACCCTTGCTGAGTCTAACAAGGTATTGCCCTATGATACACTAATGGTCGAGTTAGATGTTTCCAATGTTCGCGAACTCGAGGACTTTCTTATCAATGAATGCATGTATGCGGGTATAGTTAGGGGAAAACTGGATCAGTTAAAAAGATGTTTTGAGGTTCCGTTTGCAGCTGGTAGGGATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGGTTGAACACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGATCAAATGGGCGGACAATATGAGTGAGATGGACAAAAAACATCGTAAGGAAGCAGAAGAAGGGGTGGAAGAAGTGAAGAAGTCTCTGTCCATGAAGGGGGATGTTGACATCAGAGGGAATAAGGAGATGTTTGGGGAACCAAGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAGGAGGAGGCATCCTGTAACAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

260

Amino Acids

29.47

Weight (kDa)

5.5

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	80 - 154	9.7e-08	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	375
AciI	CCGC	4 cut(s)	83, 254, 413, 584
AclWI	GGATC	5 cut(s)	198, 444, 489, 739, 752
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	669
AflII	CTTAAG	2 cut(s)	278, 284
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	164, 535, 561, 566
AjiI	CACGTC	1 cut(s)	540
AjnI	CCWGG	3 cut(s)	186, 218, 490
AluBI	AGCT	6 cut(s)	40, 53, 160, 283, 292, 473
AluI	AGCT	6 cut(s)	40, 53, 160, 283, 292, 473
Alw26I	GTCTC	2 cut(s)	219, 660
AlwI	GGATC	5 cut(s)	198, 444, 489, 739, 752
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	79, 488
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	289, 470
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	79, 80
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	301, 482
BccI	CCATC	3 cut(s)	595, 718, 734
BciT130I	CCWGG	3 cut(s)	188, 220, 492
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	219, 660
BfaI	CTAG	1 cut(s)	500
BfrI	CTTAAG	2 cut(s)	278, 284
BisI	GCNGC	2 cut(s)	290, 471
BlsI	GCNGC	2 cut(s)	291, 472
Bme1390I	CCNGG	3 cut(s)	188, 220, 492
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	79, 80
BmiI	GGNNCC	6 cut(s)	81, 169, 217, 462, 711, 746
BmrFI	CCNGG	3 cut(s)	188, 220, 492
BmsI	GCATC	2 cut(s)	115, 775
BpiI	GAAGAC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	69, 211, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	669
Bse1I	ACTGG	2 cut(s)	438, 533
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	3 cut(s)	188, 220, 492
BseDI	CCNNGG	3 cut(s)	69, 211, 219
BseGI	GGATG	3 cut(s)	106, 679, 766
BseLI	CCNNNNNNNGG	1 cut(s)	669
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	438, 533
BseRI	GAGGAG	2 cut(s)	772, 775
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	301, 482
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	81, 490
BshNI	GGYRCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	669
BsmAI	GTCTC	2 cut(s)	219, 660
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	81, 490
BsoBI	CYCGRG	1 cut(s)	380
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
Bsp19I	CCATGG	1 cut(s)	211
Bsp68I	TCGCGA	1 cut(s)	375
BspACI	CCGC	4 cut(s)	83, 254, 413, 584
BspANI	GGCC	2 cut(s)	81, 490
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	6 cut(s)	81, 169, 217, 462, 711, 746
BspPI	GGATC	5 cut(s)	198, 444, 489, 739, 752
BspT107I	GGYRCC	1 cut(s)	215
BspTI	CTTAAG	2 cut(s)	278, 284
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	438, 533
BssECI	CCNNGG	3 cut(s)	69, 211, 219
BssMI	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
BssSI	CACGAG	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	3 cut(s)	188, 220, 492
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	122
BstAFI	CTTAAG	2 cut(s)	278, 284
BstC8I	GCNNGC	3 cut(s)	21, 51, 83
BstDEI	CTNAG	2 cut(s)	312, 485
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	106, 679, 766
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	7 cut(s)	30, 37, 193, 439, 484, 576, 747
BstMAI	GTCTC	2 cut(s)	219, 660
BstMBI	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 289
BstNI	CCWGG	3 cut(s)	188, 220, 492
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	186, 218, 490
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	301, 482
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	3 cut(s)	190, 481, 744
BstYI	RGATCY	3 cut(s)	190, 481, 744
BsuRI	GGCC	2 cut(s)	81, 490
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	106, 679, 766
BtsIMutI	CAGTG	1 cut(s)	294
BtuMI	TCGCGA	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	21, 51, 83
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	79, 80
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	212, 406, 664
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	312, 485
DpnI	GATC	7 cut(s)	29, 36, 192, 438, 483, 575, 746
DpnII	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	380
EcoRII	CCWGG	3 cut(s)	186, 218, 490
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	3 cut(s)	215, 409, 667
FaiI	YATR	8 cut(s)	213, 336, 407, 411, 419, 509, 593, 665
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	211, 405, 663
FauI	CCCGC	2 cut(s)	90, 406
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	290, 471
FokI	GGATG	3 cut(s)	93, 686, 753
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	290, 471
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	290, 471
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	81, 490
Hin1II	CATG	3 cut(s)	215, 409, 667
HincII	GTYRAC	2 cut(s)	497, 679
HindII	GTYRAC	2 cut(s)	497, 679
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	3 cut(s)	176, 314, 547
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	184, 497, 679
Hpy188I	TCNGA	5 cut(s)	70, 130, 544, 686, 749
Hpy188III	TCNNGA	3 cut(s)	43, 374, 566
Hpy8I	GTNNAC	3 cut(s)	184, 497, 679
HpyAV	CCTTC	5 cut(s)	120, 133, 158, 626, 661
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	4 cut(s)	63, 237, 405, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 289
HpyF3I	CTNAG	2 cut(s)	312, 485
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	3 cut(s)	215, 409, 667
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
Lsp1109I	GCAGC	2 cut(s)	301, 482
LweI	GCATC	2 cut(s)	115, 775
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	2 cut(s)	510, 772
MalI	GATC	7 cut(s)	29, 36, 192, 438, 483, 575, 746
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
MboII	GAAGA	7 cut(s)	109, 242, 641, 653, 661, 746, 749
MflI	RGATCY	3 cut(s)	190, 481, 744
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	2 cut(s)	273, 561
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	549, 772
MnlI	CCTC	8 cut(s)	64, 311, 376, 451, 680, 750, 753, 756
Mph1103I	ATGCAT	1 cut(s)	407
MseI	TTAA	3 cut(s)	279, 285, 443
MspA1I	CMGCKG	1 cut(s)	473
MspCI	CTTAAG	2 cut(s)	278, 284
MspR9I	CCNGG	3 cut(s)	188, 220, 492
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	3 cut(s)	188, 220, 492
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	46, 289
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
NlaIII	CATG	3 cut(s)	215, 409, 667
NlaIV	GGNNCC	6 cut(s)	81, 169, 217, 462, 711, 746
NmeAIII	GCCGAG	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	176, 547
PkrI	GCNGC	2 cut(s)	291, 472
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	3 cut(s)	186, 218, 490
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	3 cut(s)	186, 218, 490
PspN4I	GGNNCC	6 cut(s)	81, 169, 217, 462, 711, 746
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	79, 80
PspXI	VCTCGAGB	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	3 cut(s)	190, 481, 744
PvuII	CAGCTG	1 cut(s)	473
RruI	TCGCGA	1 cut(s)	375
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	279, 285, 443
SatI	GCNGC	2 cut(s)	290, 471
Sau3AI	GATC	7 cut(s)	27, 34, 190, 436, 481, 573, 744
Sau96I	GGNCC	2 cut(s)	79, 80
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	188, 220, 492
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	2 cut(s)	115, 775
Sfr274I	CTCGAG	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	278, 284, 380
SmoI	CTYRAG	3 cut(s)	278, 284, 380
Sse9I	AATT	2 cut(s)	273, 561
SsiI	CCGC	4 cut(s)	83, 254, 413, 584
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	3 cut(s)	186, 218, 490
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	4 cut(s)	9, 93, 351, 381
TasI	AATT	2 cut(s)	273, 561
TfiI	GAWTC	2 cut(s)	176, 547
Tru1I	TTAA	3 cut(s)	279, 285, 443
Tru9I	TTAA	3 cut(s)	279, 285, 443
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	289, 470
TspDTI	ATGAA	2 cut(s)	414, 680
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	301
Vha464I	CTTAAG	2 cut(s)	278, 284
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	380
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.