motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02090 AT1G02090 AT1G02090 |
| fragaria_vesca | FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 |
| malus_domestica | MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1 |
| prunus_persica | Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1 |
| pyrus_communis | pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110 |
| rosa_chinensis | RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651 |
| rosa_laevigata | RLG00000003442 RLG00000028719 |
| rosa_multiflora | Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00252910 Rroxscaffold_4G00307510 |
| rosa_rugosa | Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200 |
| rosa_samantha | Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800 |
| rosa_wichuraiana | Rw1G017280 Rw7G018650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 704 |
| Acc36I | ACCTGC | 2 cut(s) | 2089, 3650 |
| Acc65I | GGTACC | 1 cut(s) | 3040 |
| AccB1I | GGYRCC | 2 cut(s) | 2809, 3040 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2433 |
| AccBSI | CCGCTC | 3 cut(s) | 200, 286, 303 |
| AccI | GTMKAC | 1 cut(s) | 3239 |
| AccII | CGCG | 3 cut(s) | 183, 2109, 2703 |
| AclWI | GGATC | 9 cut(s) | 185, 205, 210, 1513, 1596, 1901, 2354, 2392, 3418 |
| AcoI | YGGCCR | 1 cut(s) | 1549 |
| AcsI | RAATTY | 2 cut(s) | 1839, 2946 |
| AcuI | CTGAAG | 7 cut(s) | 471, 2297, 2471, 3062, 3450, 3621, 3681 |
| AcyI | GRCGYC | 2 cut(s) | 329, 2810 |
| AdeI | CACNNNGTG | 2 cut(s) | 1499, 2287 |
| AfeI | AGCGCT | 1 cut(s) | 3621 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 414, 430, 1315, 1358, 2433 |
| AflII | CTTAAG | 1 cut(s) | 1861 |
| AflIII | ACRYGT | 4 cut(s) | 181, 740, 2062, 2598 |
| AhlI | ACTAGT | 1 cut(s) | 3731 |
| AjiI | CACGTC | 2 cut(s) | 743, 1295 |
| AjnI | CCWGG | 5 cut(s) | 264, 855, 1037, 1351, 2343 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 748, 780 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1995, 2027 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| Alw26I | GTCTC | 5 cut(s) | 190, 462, 1678, 1783, 2227 |
| AlwI | GGATC | 9 cut(s) | 185, 205, 210, 1513, 1596, 1901, 2354, 2392, 3418 |
| Aor51HI | AGCGCT | 1 cut(s) | 3621 |
| AoxI | GGCC | 8 cut(s) | 405, 528, 759, 1549, 1617, 2719, 3492, 3520 |
| ApoI | RAATTY | 2 cut(s) | 1839, 2946 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3574, 3606 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2010, 2791, 3009 |
| Asp718I | GGTACC | 1 cut(s) | 3040 |
| AspS9I | GGNCC | 5 cut(s) | 695, 1321, 1490, 2698, 3492 |
| AsuHPI | GGTGA | 6 cut(s) | 83, 1023, 1373, 2693, 2819, 3665 |
| AsuII | TTCGAA | 2 cut(s) | 1483, 3425 |
| AvaII | GGWCC | 4 cut(s) | 695, 1321, 1490, 2698 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 474, 507, 533, 566 |
| BanI | GGYRCC | 2 cut(s) | 2809, 3040 |
| BauI | CACGAG | 2 cut(s) | 1749, 2508 |
| BbsI | GAAGAC | 4 cut(s) | 87, 3210, 3311, 3609 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BccI | CCATC | 6 cut(s) | 161, 483, 1358, 2899, 3317, 3531 |
| BceAI | ACGGC | 3 cut(s) | 109, 392, 1536 |
| BciT130I | CCWGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| BciVI | GTATCC | 1 cut(s) | 3066 |
| BclI | TGATCA | 1 cut(s) | 936 |
| BcoDI | GTCTC | 5 cut(s) | 190, 462, 1678, 1783, 2227 |
| BcuI | ACTAGT | 1 cut(s) | 3731 |
| BfaI | CTAG | 7 cut(s) | 600, 632, 945, 2015, 2325, 3518, 3732 |
| BfmI | CTRYAG | 6 cut(s) | 1524, 1725, 2307, 2895, 2939, 3268 |
| BfoI | RGCGCY | 4 cut(s) | 1045, 1469, 2813, 3623 |
| BfrI | CTTAAG | 1 cut(s) | 1861 |
| BfuAI | ACCTGC | 2 cut(s) | 2089, 3650 |
| BfuI | GTATCC | 1 cut(s) | 3066 |
| BlpI | GCTNAGC | 3 cut(s) | 10, 1387, 2134 |
| BmcAI | AGTACT | 1 cut(s) | 122 |
| Bme1390I | CCNGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| Bme18I | GGWCC | 4 cut(s) | 695, 1321, 1490, 2698 |
| BmgBI | CACGTC | 2 cut(s) | 743, 1295 |
| BmgT120I | GGNCC | 5 cut(s) | 695, 1321, 1490, 2698, 3492 |
| BmiI | GGNNCC | 5 cut(s) | 573, 906, 2699, 2811, 3042 |
| BmrFI | CCNGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| BmrI | ACTGGG | 1 cut(s) | 1858 |
| BmuI | ACTGGG | 1 cut(s) | 1858 |
| BpiI | GAAGAC | 4 cut(s) | 87, 3210, 3311, 3609 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1404, 1436, 1871, 1903 |
| BpmI | CTGGAG | 3 cut(s) | 287, 2022, 2595 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 10, 1387, 2134 |
| Bpu14I | TTCGAA | 2 cut(s) | 1483, 3425 |
| BpuEI | CTTGAG | 2 cut(s) | 2251, 2744 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2853 |
| BsaHI | GRCGYC | 2 cut(s) | 329, 2810 |
| BsaJI | CCNNGG | 4 cut(s) | 855, 1131, 1878, 1981 |
| BsaWI | WCCGGW | 1 cut(s) | 2185 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1675, 1705, 1995, 2025 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 414, 430, 1315, 1358, 2433 |
| Bse1I | ACTGG | 7 cut(s) | 1231, 1853, 1998, 2005, 2830, 2865, 3754 |
| Bse3DI | GCAATG | 4 cut(s) | 603, 965, 1120, 3441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2853 |
| BseBI | CCWGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| BseDI | CCNNGG | 4 cut(s) | 855, 1131, 1878, 1981 |
| BseGI | GGATG | 7 cut(s) | 925, 1189, 1825, 2236, 2263, 2446, 2599 |
| BseJI | GATNNNNATC | 1 cut(s) | 2853 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 414, 430, 1315, 1358, 2433 |
| BseMI | GCAATG | 4 cut(s) | 603, 965, 1120, 3441 |
| BseMII | CTCAG | 9 cut(s) | 1010, 1158, 1223, 2148, 2261, 2570, 2759, 2906, 3515 |
| BseNI | ACTGG | 7 cut(s) | 1231, 1853, 1998, 2005, 2830, 2865, 3754 |
| BseRI | GAGGAG | 2 cut(s) | 1217, 1331 |
| BseYI | CCCAGC | 2 cut(s) | 1066, 3645 |
| Bsh1236I | CGCG | 3 cut(s) | 183, 2109, 2703 |
| BshFI | GGCC | 8 cut(s) | 407, 530, 761, 1551, 1619, 2721, 3494, 3522 |
| BshNI | GGYRCC | 2 cut(s) | 2809, 3040 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsiSI | CCGG | 1 cut(s) | 2186 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 414, 430, 1315, 1358, 2433 |
| BsmAI | GTCTC | 5 cut(s) | 190, 462, 1678, 1783, 2227 |
| BsmBI | CGTCTC | 1 cut(s) | 190 |
| BsmI | GAATGC | 2 cut(s) | 1115, 2569 |
| BsnI | GGCC | 8 cut(s) | 407, 530, 761, 1551, 1619, 2721, 3494, 3522 |
| Bsp119I | TTCGAA | 2 cut(s) | 1483, 3425 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp1407I | TGTACA | 2 cut(s) | 2732, 2952 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 10, 1387, 2134 |
| Bsp19I | CCATGG | 1 cut(s) | 1981 |
| BspANI | GGCC | 8 cut(s) | 407, 530, 761, 1551, 1619, 2721, 3494, 3522 |
| BspCNI | CTCAG | 9 cut(s) | 1009, 1157, 1224, 2147, 2260, 2569, 2760, 2907, 3514 |
| BspFNI | CGCG | 3 cut(s) | 183, 2109, 2703 |
| BspHI | TCATGA | 1 cut(s) | 819 |
| BspLI | GGNNCC | 5 cut(s) | 573, 906, 2699, 2811, 3042 |
| BspMAI | CTGCAG | 3 cut(s) | 1528, 1729, 2311 |
| BspMI | ACCTGC | 2 cut(s) | 2089, 3650 |
| BspPI | GGATC | 9 cut(s) | 185, 205, 210, 1513, 1596, 1901, 2354, 2392, 3418 |
| BspQI | GCTCTTC | 1 cut(s) | 1642 |
| BspT104I | TTCGAA | 2 cut(s) | 1483, 3425 |
| BspT107I | GGYRCC | 2 cut(s) | 2809, 3040 |
| BspTI | CTTAAG | 1 cut(s) | 1861 |
| BsrBI | CCGCTC | 3 cut(s) | 200, 286, 303 |
| BsrDI | GCAATG | 4 cut(s) | 603, 965, 1120, 3441 |
| BsrGI | TGTACA | 2 cut(s) | 2732, 2952 |
| BsrI | ACTGG | 7 cut(s) | 1231, 1853, 1998, 2005, 2830, 2865, 3754 |
| BssECI | CCNNGG | 4 cut(s) | 855, 1131, 1878, 1981 |
| BssNI | GRCGYC | 2 cut(s) | 329, 2810 |
| BssSI | CACGAG | 2 cut(s) | 1749, 2508 |
| BssT1I | CCWWGG | 2 cut(s) | 1131, 1981 |
| Bst2BI | CACGAG | 2 cut(s) | 1749, 2508 |
| Bst2UI | CCWGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| Bst6I | CTCTTC | 5 cut(s) | 33, 1480, 1642, 1894, 2374 |
| BstACI | GRCGYC | 2 cut(s) | 329, 2810 |
| BstAFI | CTTAAG | 1 cut(s) | 1861 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1928, 2287, 2858 |
| BstAUI | TGTACA | 2 cut(s) | 2732, 2952 |
| BstBI | TTCGAA | 2 cut(s) | 1483, 3425 |
| BstDSI | CCRYGG | 1 cut(s) | 1981 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1313 |
| BstF5I | GGATG | 7 cut(s) | 925, 1189, 1825, 2236, 2263, 2446, 2599 |
| BstFNI | CGCG | 3 cut(s) | 183, 2109, 2703 |
| BstH2I | RGCGCY | 4 cut(s) | 1045, 1469, 2813, 3623 |
| BstMAI | GTCTC | 5 cut(s) | 190, 462, 1678, 1783, 2227 |
| BstNI | CCWGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| BstNSI | RCATGY | 4 cut(s) | 754, 1978, 2602, 3250 |
| BstSCI | CCNGG | 5 cut(s) | 264, 855, 1037, 1351, 2343 |
| BstSFI | CTRYAG | 6 cut(s) | 1524, 1725, 2307, 2895, 2939, 3268 |
| BstUI | CGCG | 3 cut(s) | 183, 2109, 2703 |
| BstV2I | GAAGAC | 4 cut(s) | 87, 3210, 3311, 3609 |
| BstX2I | RGATCY | 2 cut(s) | 210, 1505 |
| BstYI | RGATCY | 2 cut(s) | 210, 1505 |
| BsuI | GTATCC | 1 cut(s) | 3066 |
| BsuRI | GGCC | 8 cut(s) | 407, 530, 761, 1551, 1619, 2721, 3494, 3522 |
| BtgI | CCRYGG | 1 cut(s) | 1981 |
| BtrI | CACGTC | 2 cut(s) | 743, 1295 |
| BtsCI | GGATG | 7 cut(s) | 925, 1189, 1825, 2236, 2263, 2446, 2599 |
| BtsI | GCAGTG | 3 cut(s) | 72, 114, 1722 |
| BveI | ACCTGC | 2 cut(s) | 2089, 3650 |
| CciI | TCATGA | 1 cut(s) | 819 |
| Cfr13I | GGNCC | 5 cut(s) | 695, 1321, 1490, 2698, 3492 |
| CseI | GACGC | 2 cut(s) | 172, 318 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 859, 894, 1146, 1181 |
| DinI | GGCGCC | 1 cut(s) | 2811 |
| DraI | TTTAAA | 1 cut(s) | 1140 |
| DraIII | CACNNNGTG | 2 cut(s) | 1499, 2287 |
| EaeI | YGGCCR | 1 cut(s) | 1549 |
| Eam1104I | CTCTTC | 5 cut(s) | 33, 1480, 1642, 1894, 2374 |
| EarI | CTCTTC | 5 cut(s) | 33, 1480, 1642, 1894, 2374 |
| EciI | GGCGGA | 1 cut(s) | 898 |
| Eco130I | CCWWGG | 2 cut(s) | 1131, 1981 |
| Eco147I | AGGCCT | 1 cut(s) | 761 |
| Eco32I | GATATC | 3 cut(s) | 583, 669, 1802 |
| Eco47I | GGWCC | 4 cut(s) | 695, 1321, 1490, 2698 |
| Eco47III | AGCGCT | 1 cut(s) | 3621 |
| Eco57I | CTGAAG | 7 cut(s) | 471, 2297, 2471, 3062, 3450, 3621, 3681 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1313 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1321 |
| EcoRII | CCWGG | 5 cut(s) | 264, 855, 1037, 1351, 2343 |
| EcoRV | GATATC | 3 cut(s) | 583, 669, 1802 |
| EcoT14I | CCWWGG | 2 cut(s) | 1131, 1981 |
| EcoT22I | ATGCAT | 2 cut(s) | 368, 3787 |
| EgeI | GGCGCC | 1 cut(s) | 2811 |
| EheI | GGCGCC | 1 cut(s) | 2811 |
| ErhI | CCWWGG | 2 cut(s) | 1131, 1981 |
| Esp3I | CGTCTC | 1 cut(s) | 190 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 140, 172, 1144, 1176, 2085, 2117, 3552, 3584 |
| FauI | CCCGC | 5 cut(s) | 389, 432, 2102, 2153, 3430 |
| FbaI | TGATCA | 1 cut(s) | 936 |
| FblI | GTMKAC | 1 cut(s) | 3239 |
| FokI | GGATG | 7 cut(s) | 932, 1196, 1832, 2223, 2270, 2453, 2606 |
| FspAI | RTGCGCAY | 1 cut(s) | 704 |
| FspBI | CTAG | 7 cut(s) | 600, 632, 945, 2015, 2325, 3518, 3732 |
| FspI | TGCGCA | 1 cut(s) | 704 |
| GsaI | CCCAGC | 2 cut(s) | 1070, 3649 |
| GsuI | CTGGAG | 3 cut(s) | 287, 2022, 2595 |
| HaeII | RGCGCY | 4 cut(s) | 1045, 1469, 2813, 3623 |
| HaeIII | GGCC | 8 cut(s) | 407, 530, 761, 1551, 1619, 2721, 3494, 3522 |
| HapII | CCGG | 1 cut(s) | 2186 |
| HgaI | GACGC | 2 cut(s) | 172, 318 |
| Hin1I | GRCGYC | 2 cut(s) | 329, 2810 |
| HincII | GTYRAC | 1 cut(s) | 2355 |
| HindII | GTYRAC | 1 cut(s) | 2355 |
| HindIII | AAGCTT | 3 cut(s) | 731, 2453, 3546 |
| HpaII | CCGG | 1 cut(s) | 2186 |
| HphI | GGTGA | 6 cut(s) | 83, 1023, 1373, 2693, 2819, 3665 |
| Hpy166II | GTNNAC | 7 cut(s) | 629, 1031, 1493, 1720, 2355, 3240, 3565 |
| Hpy8I | GTNNAC | 7 cut(s) | 629, 1031, 1493, 1720, 2355, 3240, 3565 |
| Hpy99I | CGWCG | 3 cut(s) | 89, 413, 2975 |
| HpyCH4IV | ACGT | 5 cut(s) | 742, 1255, 1294, 2062, 2970 |
| HpySE526I | ACGT | 5 cut(s) | 742, 1255, 1294, 2062, 2970 |
| Hsp92I | GRCGYC | 2 cut(s) | 329, 2810 |
| KasI | GGCGCC | 1 cut(s) | 2809 |
| KpnI | GGTACC | 1 cut(s) | 3044 |
| Ksp22I | TGATCA | 1 cut(s) | 936 |
| LguI | GCTCTTC | 1 cut(s) | 1642 |
| LmnI | GCTCC | 8 cut(s) | 117, 205, 646, 842, 1339, 1985, 2566, 3678 |
| MaeI | CTAG | 7 cut(s) | 600, 632, 945, 2015, 2325, 3518, 3732 |
| MaeII | ACGT | 5 cut(s) | 742, 1255, 1294, 2062, 2970 |
| MbiI | CCGCTC | 3 cut(s) | 200, 286, 303 |
| MfeI | CAATTG | 5 cut(s) | 248, 2472, 2582, 2799, 3071 |
| MflI | RGATCY | 2 cut(s) | 210, 1505 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MluI | ACGCGT | 1 cut(s) | 181 |
| Mly113I | GGCGCC | 1 cut(s) | 2810 |
| MlyI | GAGTC | 6 cut(s) | 50, 56, 970, 2586, 3294, 3361 |
| MmeI | TCCRAC | 5 cut(s) | 24, 1483, 2296, 2979, 3700 |
| Mph1103I | ATGCAT | 2 cut(s) | 368, 3787 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2010, 2791, 3009 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2028 |
| MspA1I | CMGCKG | 5 cut(s) | 646, 1304, 2048, 2138, 2927 |
| MspCI | CTTAAG | 1 cut(s) | 1861 |
| MspI | CCGG | 1 cut(s) | 2186 |
| MspR9I | CCNGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| MunI | CAATTG | 5 cut(s) | 248, 2472, 2582, 2799, 3071 |
| Mva1269I | GAATGC | 2 cut(s) | 1115, 2569 |
| MvaI | CCWGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| MvnI | CGCG | 3 cut(s) | 183, 2109, 2703 |
| NarI | GGCGCC | 1 cut(s) | 2810 |
| NcoI | CCATGG | 1 cut(s) | 1981 |
| NlaIV | GGNNCC | 5 cut(s) | 573, 906, 2699, 2811, 3042 |
| NmeAIII | GCCGAG | 1 cut(s) | 1903 |
| NmuCI | GTSAC | 3 cut(s) | 385, 1844, 3278 |
| NsbI | TGCGCA | 1 cut(s) | 704 |
| NsiI | ATGCAT | 2 cut(s) | 368, 3787 |
| NspI | RCATGY | 4 cut(s) | 754, 1978, 2602, 3250 |
| NspV | TTCGAA | 2 cut(s) | 1483, 3425 |
| PaeI | GCATGC | 1 cut(s) | 1978 |
| PagI | TCATGA | 1 cut(s) | 819 |
| PceI | AGGCCT | 1 cut(s) | 761 |
| PciI | ACATGT | 1 cut(s) | 2598 |
| PciSI | GCTCTTC | 1 cut(s) | 1642 |
| PctI | GAATGC | 2 cut(s) | 1115, 2569 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2010, 2791, 3009 |
| PflFI | GACNNNGTC | 1 cut(s) | 3284 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2433 |
| PleI | GAGTC | 6 cut(s) | 49, 55, 969, 2585, 3293, 3360 |
| PluTI | GGCGCC | 1 cut(s) | 2813 |
| PpsI | GAGTC | 6 cut(s) | 49, 55, 969, 2585, 3293, 3360 |
| PpuMI | RGGWCCY | 1 cut(s) | 1321 |
| PscI | ACATGT | 1 cut(s) | 2598 |
| Psp5II | RGGWCCY | 1 cut(s) | 1321 |
| Psp6I | CCWGG | 5 cut(s) | 264, 855, 1037, 1351, 2343 |
| PspFI | CCCAGC | 2 cut(s) | 1066, 3645 |
| PspGI | CCWGG | 5 cut(s) | 264, 855, 1037, 1351, 2343 |
| PspN4I | GGNNCC | 5 cut(s) | 573, 906, 2699, 2811, 3042 |
| PspPI | GGNCC | 5 cut(s) | 695, 1321, 1490, 2698, 3492 |
| PspPPI | RGGWCCY | 1 cut(s) | 1321 |
| PstI | CTGCAG | 3 cut(s) | 1528, 1729, 2311 |
| PsuI | RGATCY | 2 cut(s) | 210, 1505 |
| PsyI | GACNNNGTC | 1 cut(s) | 3284 |
| PvuII | CAGCTG | 3 cut(s) | 1304, 2138, 2927 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2028 |
| SapI | GCTCTTC | 1 cut(s) | 1642 |
| Sau96I | GGNCC | 5 cut(s) | 695, 1321, 1490, 2698, 3492 |
| ScaI | AGTACT | 1 cut(s) | 122 |
| SchI | GAGTC | 6 cut(s) | 50, 56, 970, 2586, 3294, 3361 |
| ScrFI | CCNGG | 5 cut(s) | 266, 857, 1039, 1353, 2345 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SfcI | CTRYAG | 6 cut(s) | 1524, 1725, 2307, 2895, 2939, 3268 |
| SfoI | GGCGCC | 1 cut(s) | 2811 |
| SfuI | TTCGAA | 2 cut(s) | 1483, 3425 |
| SinI | GGWCC | 4 cut(s) | 695, 1321, 1490, 2698 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2028 |
| SmlI | CTYRAG | 3 cut(s) | 1861, 2230, 2723 |
| SmoI | CTYRAG | 3 cut(s) | 1861, 2230, 2723 |
| SpeI | ACTAGT | 1 cut(s) | 3731 |
| SphI | GCATGC | 1 cut(s) | 1978 |
| SseBI | AGGCCT | 1 cut(s) | 761 |
| SspDI | GGCGCC | 1 cut(s) | 2809 |
| SspI | AATATT | 1 cut(s) | 1916 |
| SspMI | CTAG | 7 cut(s) | 600, 632, 945, 2015, 2325, 3518, 3732 |
| StuI | AGGCCT | 1 cut(s) | 761 |
| StyD4I | CCNGG | 5 cut(s) | 264, 855, 1037, 1351, 2343 |
| StyI | CCWWGG | 2 cut(s) | 1131, 1981 |
| TaiI | ACGT | 5 cut(s) | 745, 1258, 1297, 2065, 2973 |
| TatI | WGTACW | 5 cut(s) | 120, 512, 1952, 2732, 2952 |
| TauI | GCSGC | 1 cut(s) | 505 |
| TseFI | GTSAC | 3 cut(s) | 385, 1844, 3278 |
| Tsp45I | GTSAC | 3 cut(s) | 385, 1844, 3278 |
| TspGWI | ACGGA | 5 cut(s) | 564, 1256, 1583, 3500, 3556 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3284 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2433 |
| Vha464I | CTTAAG | 1 cut(s) | 1861 |
| VpaK11BI | GGWCC | 4 cut(s) | 695, 1321, 1490, 2698 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1313 |
| XapI | RAATTY | 2 cut(s) | 1839, 2946 |
| XceI | RCATGY | 4 cut(s) | 754, 1978, 2602, 3250 |
| XmiI | GTMKAC | 1 cut(s) | 3239 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2010, 2791, 3009 |
| XspI | CTAG | 7 cut(s) | 600, 632, 945, 2015, 2325, 3518, 3732 |
| ZrmI | AGTACT | 1 cut(s) | 122 |
| Zsp2I | ATGCAT | 2 cut(s) | 368, 3787 |