Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

6737555 .. 6744075

Gene Structure 6521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGATAGAGCAGAAACAAGCCCAAATGATCGAGCACTTTGTGAAGCAAGCCTCTAGTCTGCAAGGGTCTTCTCTCGTCAGCCTCATAGTCCAAGTCACTTCTCATTCTTCTCTCTTCGCTTTCTCTGAGATTTTGGCTGTCCCCAGTGTGCTCGAGCTTCAAGGAACTGATTATGCTGTATACATTGATCTGCTTCGTCTCTTTGCTCATGGTACATGGAGCGACTACAAGAGTAATGCTAGCCTTCTTCCACCACTAACCCCAGATCAAATCACCAAGCTGAAGCAACTTACTGTGCTCTCTCTAGCTGAGATAAACAAGGTTTTATCCTATGATCAACTTCTTGAGCAGCTTGATCTTTCAAATGTGCGCGAACTTGAAGACTTTCTTATCAACGAATGCATGTATGCGGGCATAGTCAAAGGGAAGCTGGATCATTTGAGAAGATCTTTTGAGGTTCAATTTGCAGCTGGCAGGGATTTGAGGCCTGGACAACTAGGGAATATAATACAGACTTTAGATGATTGGTTAAACACTACAGACAATGTGCTTCTCACAATTGAAGAGAAGATCAAATGGGCAGATAAAAAGTGTGCGTTGAATACAATACACCAAAAGCAAAAGGCAGTCAAGGACAAGGTGGAAGAAGTAAAGAAGTCTCTTTTTAACAGGGGTGGGCGTGACTTCCAAGCACTCGATGACGTCCTGTTTGGTGAAACAGCTGGGTTAATGGACTATGAAGAAGATCGCACCCGAACCAAGAGGAGAAGGTCGCCAATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

263

Amino Acids

29.83

Weight (kDa)

5.63

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	705
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	217
AgsI	TTSAA	6 cut(s)	164, 366, 383, 464, 566, 604
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	7 cut(s)	160, 283, 311, 355, 433, 473, 725
AluI	AGCT	7 cut(s)	160, 283, 311, 355, 433, 473, 725
Alw21I	GWGCWC	3 cut(s)	39, 156, 303
Alw26I	GTCTC	2 cut(s)	206, 666
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	352, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	375
AsuHPI	GGTGA	2 cut(s)	268, 728
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	63, 390
Bbv12I	GWGCWC	3 cut(s)	39, 156, 303
BbvI	GCAGC	2 cut(s)	364, 482
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	206, 666
BfaI	CTAG	4 cut(s)	57, 243, 308, 500
BfmI	CTRYAG	1 cut(s)	540
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	2 cut(s)	353, 471
BlsI	GCNGC	2 cut(s)	354, 472
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	141
BmtI	GCTAGC	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	2 cut(s)	63, 390
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	120, 303
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	364, 482
BseYI	CCCAGC	1 cut(s)	725
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	39, 156, 303
BsiHKCI	CYCGRG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	206, 666
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	39, 156, 303
Bsp143I	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	2 cut(s)	121, 304
BspFNI	CGCG	1 cut(s)	375
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
BssNAI	GTATAC	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	705
Bst1107I	GTATAC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	122, 561
BstACI	GRCGYC	1 cut(s)	705
BstC8I	GCNNGC	4 cut(s)	51, 244, 415, 475
BstDEI	CTNAG	2 cut(s)	129, 312
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	9 cut(s)	33, 193, 271, 340, 361, 439, 452, 576, 751
BstMAI	GTCTC	2 cut(s)	206, 666
BstMBI	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	364, 482
BstV2I	GAAGAC	2 cut(s)	63, 390
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BstZ17I	GTATAC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	51, 244, 415, 475
CfoI	GCGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	212, 219, 406
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	129, 312
DpnI	GATC	9 cut(s)	32, 192, 270, 339, 360, 438, 451, 575, 750
DpnII	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	122, 561
EarI	CTCTTC	2 cut(s)	122, 561
Eco147I	AGGCCT	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	407
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	215, 222, 409
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	211, 218, 405
FauI	CCCGC	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	353, 471
Fsp4HI	GCNGC	2 cut(s)	353, 471
FspBI	CTAG	4 cut(s)	57, 243, 308, 500
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	2 cut(s)	353, 471
GsaI	CCCAGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	215, 222, 409
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HphI	GGTGA	2 cut(s)	268, 728
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	257, 765
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	3 cut(s)	64, 405, 470
HpyF3I	CTNAG	2 cut(s)	129, 312
HpySE526I	ACGT	1 cut(s)	705
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	3 cut(s)	215, 222, 409
HspAI	GCGC	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	364, 482
MaeI	CTAG	4 cut(s)	57, 243, 308, 500
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	97, 683
MalI	GATC	9 cut(s)	32, 192, 270, 339, 360, 438, 451, 575, 750
MboI	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	3 cut(s)	39, 156, 303
MluCI	AATT	2 cut(s)	464, 561
MnlI	CCTC	5 cut(s)	64, 95, 451, 480, 759
Mph1103I	ATGCAT	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	3 cut(s)	533, 669, 731
MspA1I	CMGCKG	2 cut(s)	473, 725
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	375
NdeII	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	215, 222, 409
NmuCI	GTSAC	2 cut(s)	97, 683
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	354, 472
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	490
PspXI	VCTCGAGB	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	449
PvuII	CAGCTG	2 cut(s)	473, 725
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	533, 669, 731
SatI	GCNGC	2 cut(s)	353, 471
Sau3AI	GATC	9 cut(s)	30, 190, 268, 337, 358, 436, 449, 573, 748
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	3 cut(s)	39, 156, 303
SfcI	CTRYAG	1 cut(s)	540
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	155, 347
SmoI	CTYRAG	2 cut(s)	155, 347
Sse9I	AATT	2 cut(s)	464, 561
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	4 cut(s)	57, 243, 308, 500
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	3 cut(s)	33, 156, 699
TasI	AATT	2 cut(s)	464, 561
Tru1I	TTAA	3 cut(s)	533, 669, 731
Tru9I	TTAA	3 cut(s)	533, 669, 731
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	97, 683
TseI	GCWGC	2 cut(s)	352, 470
Tsp45I	GTSAC	2 cut(s)	97, 683
TspDTI	ATGAA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	154
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	4 cut(s)	57, 243, 308, 500
ZraI	GACGTC	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.