Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

20279615 .. 20285465

Gene Structure 5851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGATAGAGCAGAAACAAGCCCAGCTGATCGATCACTTTGTGAAGCAAGCCTCTACTCTCCAAGGCTCTTCTCTCGTCAGCCTCATCGTCCAACTCACCTCTCACAATTCCCTCTTCGCTTTCTCTGAGATTCTGGCCGTCCCCAATGTCCTCCAGCTTCAAGGAACCGAATATGCTGTATACATTGATATGCTTCGCCTCTTTGCTCATGGTACATGGAGCGATTATAAAAGTAATGCTAGCCTTCTTCCACCACTAGTCCCAGATCAAATCAACAAGCTGAAGCAACTTACTGTGCTGTCTCTAGCTGAGGCGAACAAGGTTCTATCCTATGATCAACTCCTTGAGCAACTTGATCTTTCAAATGTACGTGAACTTGAAGACTTTCTTATCAATGAATGCATGTATATGGGCATAATCAAAGGGAAGTTGGATCATTTGAAAAGATCTGTTGAGGTTCAGTTTGCAGCTGGGAGGGATCTGAAACCTGGACAGCTAGGGAATATAATAGAGACCTTAACGGATTGGTTAGCCACTACCGACAATGTACTTCTCACAATTGAGGAGAAGATCAAATGGGCAGATAAGAAGTGTGAGTTGAATGCAACACACCAAAAGGAAGTCAAGGACAGAGTAGAAGAAGTGAAGAAGTCTCTTAGTCACAACAGGTTGCCTCGTGAATATCGTGTTGAAGACTTTATGTTTGGTGAACCAGCTGGATTAATGGACTATGAAGAAGATCGAACCCGAATGAAGAGGAGAAGGTCGCCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

260

Amino Acids

29.94

Weight (kDa)

5.76

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	9.4e-06	CSN7 helical bundle subdomain
PCI	PF01399	82 - 155	8.1e-08	PCI domain
CSN7a_helixI	PF18392	167 - 213	9.7e-06	COP9 signalosome complex subunit 7a helix I domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	183
AclWI	GGATC	2 cut(s)	444, 489
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	217, 372, 552
AgsI	TTSAA	6 cut(s)	164, 366, 383, 445, 604, 695
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	7 cut(s)	28, 160, 283, 311, 473, 499, 719
AluI	AGCT	7 cut(s)	28, 160, 283, 311, 473, 499, 719
Alw26I	GTCTC	3 cut(s)	309, 509, 660
AlwI	GGATC	2 cut(s)	444, 489
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
AseI	ATTAAT	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	91, 722
AsuNHI	GCTAGC	1 cut(s)	242
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	390, 702
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	309, 509, 660
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	4 cut(s)	243, 260, 308, 500
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	492
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	390, 702
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	120, 303
BseRI	GAGGAG	2 cut(s)	581, 775
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	2 cut(s)	24, 473
BshFI	GGCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	128, 248
BsmAI	GTCTC	3 cut(s)	309, 509, 660
BsmFI	GGGAC	2 cut(s)	128, 248
BsmI	GAATGC	2 cut(s)	407, 610
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	121, 304
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	444, 489
BspQI	GCTCTTC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	3 cut(s)	76, 122, 752
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	51, 244
BstDEI	CTNAG	3 cut(s)	129, 312, 659
BstMAI	GTCTC	3 cut(s)	309, 509, 660
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	2 cut(s)	390, 702
BstX2I	RGATCY	2 cut(s)	449, 481
BstYI	RGATCY	2 cut(s)	449, 481
BstZ17I	GTATAC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	51, 244
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	216, 371, 551
CviAII	CATG	3 cut(s)	212, 219, 406
CviQI	GTAC	3 cut(s)	216, 371, 551
DdeI	CTNAG	3 cut(s)	129, 312, 659
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	76, 122, 752
EarI	CTCTTC	3 cut(s)	76, 122, 752
Eco130I	CCWWGG	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	3 cut(s)	215, 222, 409
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	3 cut(s)	211, 218, 405
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	4 cut(s)	243, 260, 308, 500
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	2 cut(s)	28, 477
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	215, 222, 409
HinfI	GANTC	1 cut(s)	133
HphI	GGTGA	2 cut(s)	91, 722
Hpy166II	GTNNAC	3 cut(s)	184, 377, 713
Hpy188I	TCNGA	2 cut(s)	130, 486
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	3 cut(s)	184, 377, 713
HpyAV	CCTTC	2 cut(s)	257, 759
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	405, 470, 608
HpyF3I	CTNAG	3 cut(s)	129, 312, 659
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	3 cut(s)	215, 222, 409
Ksp22I	TGATCA	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	482
MaeI	CTAG	4 cut(s)	243, 260, 308, 500
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	662
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	449, 481
MluCI	AATT	2 cut(s)	109, 561
MmeI	TCCRAC	2 cut(s)	118, 414
Mph1103I	ATGCAT	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	2 cut(s)	521, 725
MslI	CAYNNNNRTG	2 cut(s)	191, 410
MspA1I	CMGCKG	3 cut(s)	28, 473, 719
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	2 cut(s)	407, 610
MvaI	CCWGG	1 cut(s)	492
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	215, 222, 409
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PctI	GAATGC	2 cut(s)	407, 610
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	2 cut(s)	24, 473
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	449, 481
PvuII	CAGCTG	3 cut(s)	28, 473, 719
RsaI	GTAC	3 cut(s)	217, 372, 552
RsaNI	GTAC	3 cut(s)	216, 371, 551
RseI	CAYNNNNRTG	2 cut(s)	191, 410
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	521, 725
SatI	GCNGC	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	191, 410
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	259
Sse9I	AATT	2 cut(s)	109, 561
SspMI	CTAG	4 cut(s)	243, 260, 308, 500
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	33, 745
TasI	AATT	2 cut(s)	109, 561
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	521, 725
Tru9I	TTAA	2 cut(s)	521, 725
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	3 cut(s)	414, 750, 770
TspGWI	ACGGA	1 cut(s)	539
VspI	ATTAAT	1 cut(s)	725
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	4 cut(s)	243, 260, 308, 500
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.