Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

28809552 .. 28814242

Gene Structure 4691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGACATCGAGCAAAAGCAAGAGGAGCTGATCGATCACTTCGTCAAGCAAGCCTCCTCTCTCACAGGCTCCGCCCTCTCCTCCGTCGTCGCCGACGCCACCTCCCACCCTTCCCTCTTCGCCTTCTCCGAGATTCTCGCCCTCCCTAATCTTCTTCAGCTCGAAGGAACAGAGAATGCTGTGTACCTGGATGTGCTTCGGCTGTTTGCACACGGCACATGGAGTGATTACAAGAGTAATGCCGGTCGTCTTCCACAGTTGGTCCCTGATCAAGCACTAAAGCTAAGGCAGTTAACTGTTCTTACACTGGCTGAGACAAACAAGATACTACCATATGATCAGCTAATGCAGGAGTTAGACGTTGCAAATGTACGTGAACTCGAAGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAGTAAGAGGAAAGTTGGACCAGTTAAGAAAATGCTTTGAGGTCCAATTTGCTGCAGGGAGAGATCCGAGACCTGAGCAACTTGGGAGTATGATCCAAACACTATCAAACTGGTTGGTTACGTCAGACAACCTTCTTATCTCAATTCAAGAGAAGATGAGCTGGGCAGATAAAATGACTGAACTGAACAAGCAGCACAAAAAGGAAATTGAAGACAAGGTGGAAGATGTAAAGAGAGCATATTCAATGAAGTTCCACCCTGTAAGCAGGCCGACAGTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.82

Weight (kDa)

5.36

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	9.2e-07	CSN7 helical bundle subdomain
PCI	PF01399	84 - 155	5.5e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 413
AclWI	GGATC	2 cut(s)	476, 505
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	185, 372
AgsI	TTSAA	3 cut(s)	566, 629, 663
AjnI	CCWGG	2 cut(s)	186, 729
AluBI	AGCT	5 cut(s)	28, 160, 283, 343, 579
AluI	AGCT	5 cut(s)	28, 160, 283, 343, 579
Alw26I	GTCTC	2 cut(s)	308, 481
AlwI	GGATC	2 cut(s)	476, 505
AoxI	GGCC	1 cut(s)	686
ApeKI	GCWGC	2 cut(s)	470, 610
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	262, 436, 460
AsuC2I	CCSGG	1 cut(s)	703
AvaII	GGWCC	3 cut(s)	262, 436, 460
BbsI	GAAGAC	2 cut(s)	242, 636
BbvI	GCAGC	2 cut(s)	457, 622
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	188, 731
BclI	TGATCA	2 cut(s)	268, 337
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	2 cut(s)	308, 481
BfmI	CTRYAG	1 cut(s)	471
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	2 cut(s)	471, 611
BlsI	GCNGC	2 cut(s)	472, 612
Bme1390I	CCNGG	3 cut(s)	188, 703, 731
Bme18I	GGWCC	3 cut(s)	262, 436, 460
BmgT120I	GGNCC	3 cut(s)	262, 436, 460
BmiI	GGNNCC	2 cut(s)	70, 264
BmrFI	CCNGG	3 cut(s)	188, 703, 731
BpiI	GAAGAC	2 cut(s)	242, 636
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
Bpu10I	CCTNAGC	2 cut(s)	284, 492
BpuMI	CCSGG	1 cut(s)	703
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	702
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	312, 439, 533
BseBI	CCWGG	2 cut(s)	188, 731
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	303, 483
BseNI	ACTGG	3 cut(s)	312, 439, 533
BseRI	GAGGAG	4 cut(s)	38, 46, 70, 727
BseXI	GCAGC	2 cut(s)	457, 622
BseYI	CCCAGC	1 cut(s)	579
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	688
BshVI	ATCGAT	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	243, 702
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	308, 481
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	688
Bso31I	GGTCTC	1 cut(s)	481
Bsp143I	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
BspACI	CCGC	2 cut(s)	72, 413
BspANI	GGCC	1 cut(s)	688
BspCNI	CTCAG	2 cut(s)	304, 484
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	70, 264
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	476, 505
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	312, 439, 533
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	188, 731
Bst4CI	ACNGT	3 cut(s)	258, 298, 694
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	51, 415, 686
BstDEI	CTNAG	3 cut(s)	284, 312, 492
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	7 cut(s)	33, 37, 271, 340, 484, 513, 719
BstMAI	GTCTC	2 cut(s)	308, 481
BstMBI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	188, 731
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	186, 701, 729
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	457, 622
BstV2I	GAAGAC	2 cut(s)	242, 636
BstX2I	RGATCY	2 cut(s)	481, 716
BstYI	RGATCY	2 cut(s)	481, 716
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	688
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	305, 699
Cac8I	GCNNGC	3 cut(s)	51, 415, 686
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	262, 436, 460
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	729
Csp6I	GTAC	2 cut(s)	184, 371
CviAII	CATG	3 cut(s)	219, 406, 709
CviQI	GTAC	2 cut(s)	184, 371
DdeI	CTNAG	3 cut(s)	284, 312, 492
DpnI	GATC	7 cut(s)	32, 36, 270, 339, 483, 512, 718
DpnII	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	3 cut(s)	262, 436, 460
Eco57I	CTGAAG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	186, 729
FaeI	CATG	3 cut(s)	222, 409, 712
FaiI	YATR	9 cut(s)	220, 334, 336, 407, 411, 419, 509, 658, 710
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	218, 405, 708
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	2 cut(s)	268, 337
Fnu4HI	GCNGC	2 cut(s)	471, 611
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	471, 611
GluI	GCNGC	2 cut(s)	471, 611
GsaI	CCCAGC	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	688
HapII	CCGG	2 cut(s)	243, 702
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	222, 409, 712
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	2 cut(s)	243, 702
Hpy166II	GTNNAC	3 cut(s)	184, 294, 377
Hpy188I	TCNGA	4 cut(s)	130, 486, 544, 726
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	3 cut(s)	184, 294, 377
Hpy99I	CGWCG	3 cut(s)	89, 92, 98
HpyAV	CCTTC	4 cut(s)	120, 133, 158, 560
HpyCH4III	ACNGT	3 cut(s)	258, 298, 694
HpyCH4IV	ACGT	3 cut(s)	360, 373, 539
HpyCH4V	TGCA	5 cut(s)	209, 349, 365, 405, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	284, 312, 492
HpySE526I	ACGT	3 cut(s)	360, 373, 539
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	222, 409, 712
Ksp22I	TGATCA	2 cut(s)	268, 337
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
LmnI	GCTCC	2 cut(s)	25, 74
Lsp1109I	GCAGC	2 cut(s)	457, 622
MabI	ACCWGGT	1 cut(s)	729
MaeII	ACGT	3 cut(s)	360, 373, 539
MaeIII	GTNAC	2 cut(s)	535, 694
MalI	GATC	7 cut(s)	32, 36, 270, 339, 483, 512, 718
MboI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
MboII	GAAGA	8 cut(s)	109, 143, 146, 242, 395, 583, 641, 653
MflI	RGATCY	2 cut(s)	481, 716
MluCI	AATT	3 cut(s)	464, 561, 624
MmeI	TCCRAC	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	3 cut(s)	293, 396, 443
MspI	CCGG	2 cut(s)	243, 702
MspR9I	CCNGG	3 cut(s)	188, 703, 731
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	188, 731
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	703
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
NlaIII	CATG	3 cut(s)	222, 409, 712
NlaIV	GGNNCC	2 cut(s)	70, 264
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 126
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	472, 612
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	186, 729
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	2 cut(s)	186, 729
PspN4I	GGNNCC	2 cut(s)	70, 264
PspPI	GGNCC	3 cut(s)	262, 436, 460
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	481, 716
RsaI	GTAC	2 cut(s)	185, 372
RsaNI	GTAC	2 cut(s)	184, 371
SaqAI	TTAA	3 cut(s)	293, 396, 443
SatI	GCNGC	2 cut(s)	471, 611
Sau3AI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 716
Sau96I	GGNCC	3 cut(s)	262, 436, 460
ScrFI	CCNGG	3 cut(s)	188, 703, 731
SexAI	ACCWGGT	1 cut(s)	729
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	3 cut(s)	262, 436, 460
Sse9I	AATT	3 cut(s)	464, 561, 624
SsiI	CCGC	2 cut(s)	72, 413
StyD4I	CCNGG	3 cut(s)	186, 701, 729
TaaI	ACNGT	3 cut(s)	258, 298, 694
TaiI	ACGT	3 cut(s)	363, 376, 542
TaqI	TCGA	4 cut(s)	9, 33, 162, 381
TasI	AATT	3 cut(s)	464, 561, 624
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	293, 396, 443
Tru9I	TTAA	3 cut(s)	293, 396, 443
TscAI	CASTG	2 cut(s)	312, 699
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	2 cut(s)	470, 610
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	312, 699
VpaK11BI	GGWCC	3 cut(s)	262, 436, 460
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.