Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

18674570 .. 18679645

Gene Structure 5076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACATTGAGCAAAAGCAAGAAGAGATCATCGATCACTTCGTTAAGCAAGCCTTGTCCCTCGAAGGCTCTGCCCTCGGCTCCCTCGTCGTCGAAGCCACCTCGCACCCTTCTCTCTTCGCCTTCTCCGAGATTCTCGCCGTTCCTAATGTTCTTCAGCTTGAAGGAACAGAAACTTCTGTGAACCTGGATGTGCTTCGCTTGTTTTCACAAGGAACATGGAGTGACTACAAAAGTGATGCCAGTCGTCTTCCCCATTTGGTCCCTGATCAAGTCCTAAAGCTGAAGCAGCTCACTGTTCTTACACTAGCTGAGACAAACAAGGTACTACCATATGATCAACTAATGCAGGAGTTAGATGTTATAAATGTACGTGAGCTCGAGGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAGTAAGAGGAAAGCTTGACCAGCTGCGGAAGTGCTTTGAGGTCCAGTTTGCTGCAGGGAGAGACCCCAGACCTGGACAACTTGGGAGTATGATACACACACTGTCAAACTGGTTGGATACCTCGAACAATCTTCTTATCTCGATTCAAGAGAAGATGAAGTGGGCAGATACTATGACTGAATTGGCCAAGGAACACAAAAAAGAGGTTGAAGATAGGGTGGAAGAAGTAAAGAAGTCCTCTTCCCACAAGAAGTTCCACACTGTAACCAGGCCGACATTGACTTCCGGGGGCACGAGGAGATTTACTCCGAACCTGGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.96

Weight (kDa)

5.46

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AciI	CCGC	2 cut(s)	413, 445
AcoI	YGGCCR	1 cut(s)	603
AcuI	CTGAAG	2 cut(s)	140, 305
AfaI	GTAC	2 cut(s)	327, 372
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	3 cut(s)	164, 566, 629
AjnI	CCWGG	4 cut(s)	186, 490, 686, 732
AluBI	AGCT	7 cut(s)	160, 283, 292, 311, 379, 433, 442
AluI	AGCT	7 cut(s)	160, 283, 292, 311, 379, 433, 442
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	308, 474
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	603, 689
ApeKI	GCWGC	3 cut(s)	289, 442, 470
AseI	ATTAAT	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	262, 460
AsuC2I	CCSGG	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	262, 460
BaeGI	GKGCMC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	301, 429, 457
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	4 cut(s)	188, 492, 688, 734
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	2 cut(s)	268, 337
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	308, 474
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	290, 443, 471
BlsI	GCNGC	3 cut(s)	291, 444, 472
Bme1390I	CCNGG	5 cut(s)	188, 492, 688, 706, 734
Bme18I	GGWCC	2 cut(s)	262, 460
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	262, 460
BmiI	GGNNCC	2 cut(s)	82, 264
BmrFI	CCNGG	5 cut(s)	188, 492, 688, 706, 734
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpuMI	CCSGG	1 cut(s)	706
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	76, 606, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	243, 463, 533
BseBI	CCWGG	4 cut(s)	188, 492, 688, 734
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	76, 606, 705
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	3 cut(s)	243, 463, 533
BseRI	GAGGAG	1 cut(s)	730
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	3 cut(s)	301, 429, 457
BshFI	GGCC	2 cut(s)	605, 691
BshVI	ATCGAT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	2 cut(s)	43, 248
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	308, 474
BsmFI	GGGAC	2 cut(s)	43, 248
BsnI	GGCC	2 cut(s)	605, 691
Bso31I	GGTCTC	1 cut(s)	474
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	381, 713
Bsp143I	GATC	4 cut(s)	27, 34, 268, 337
BspACI	CCGC	2 cut(s)	413, 445
BspANI	GGCC	2 cut(s)	605, 691
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	82, 264
BspMAI	CTGCAG	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	474
BsrI	ACTGG	3 cut(s)	243, 463, 533
BssECI	CCNNGG	3 cut(s)	76, 606, 705
BssMI	GATC	4 cut(s)	27, 34, 268, 337
BssSI	CACGAG	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	712
Bst2UI	CCWGG	4 cut(s)	188, 492, 688, 734
Bst4CI	ACNGT	3 cut(s)	298, 522, 682
Bst6I	CTCTTC	3 cut(s)	18, 122, 664
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	51, 415
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	4 cut(s)	30, 37, 271, 340
BstMAI	GTCTC	2 cut(s)	308, 474
BstMBI	GATC	4 cut(s)	27, 34, 268, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 439
BstNI	CCWGG	4 cut(s)	188, 492, 688, 734
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	5 cut(s)	186, 490, 686, 704, 732
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	301, 429, 457
BstV2I	GAAGAC	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	605, 691
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	294, 518, 678
Cac8I	GCNNGC	2 cut(s)	51, 415
Cfr13I	GGNCC	2 cut(s)	262, 460
ClaI	ATCGAT	1 cut(s)	33
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	2 cut(s)	326, 371
CviAII	CATG	2 cut(s)	219, 406
CviQI	GTAC	2 cut(s)	326, 371
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	29, 36, 270, 339
DpnII	GATC	4 cut(s)	27, 34, 268, 337
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	3 cut(s)	18, 122, 664
EarI	CTCTTC	3 cut(s)	18, 122, 664
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	262, 460
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	140, 305
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	4 cut(s)	186, 490, 686, 732
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	222, 409
FaiI	YATR	9 cut(s)	220, 334, 336, 365, 407, 411, 419, 509, 593
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	2 cut(s)	43, 248
FatI	CATG	2 cut(s)	218, 405
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	2 cut(s)	268, 337
Fnu4HI	GCNGC	3 cut(s)	290, 443, 471
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	3 cut(s)	290, 443, 471
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	290, 443, 471
HaeIII	GGCC	2 cut(s)	605, 691
HapII	CCGG	1 cut(s)	705
Hin1II	CATG	2 cut(s)	222, 409
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	133, 562
HpaII	CCGG	1 cut(s)	705
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	130, 729
Hpy188III	TCNNGA	2 cut(s)	559, 566
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	4 cut(s)	59, 120, 133, 158
HpyCH4III	ACNGT	3 cut(s)	298, 522, 682
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	349, 405, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 439
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	222, 409
Ksp22I	TGATCA	2 cut(s)	268, 337
Kzo9I	GATC	4 cut(s)	27, 34, 268, 337
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	3 cut(s)	301, 429, 457
LweI	GCATC	1 cut(s)	229
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	2 cut(s)	224, 682
MalI	GATC	4 cut(s)	29, 36, 270, 339
MboI	GATC	4 cut(s)	27, 34, 268, 337
MboII	GAAGA	9 cut(s)	35, 109, 146, 242, 542, 583, 641, 651, 653
MhlI	GDGCHC	2 cut(s)	381, 713
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	1 cut(s)	599
MluNI	TGGCCA	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	513
Mox20I	TGGCCA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	2 cut(s)	45, 396
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	5 cut(s)	188, 492, 688, 706, 734
MvaI	CCWGG	4 cut(s)	188, 492, 688, 734
MwoI	GCNNNNNNNGC	2 cut(s)	289, 439
NciI	CCSGG	1 cut(s)	706
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	27, 34, 268, 337
NlaIII	CATG	2 cut(s)	222, 409
NlaIV	GGNNCC	2 cut(s)	82, 264
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 84, 126
PfeI	GAWTC	2 cut(s)	133, 562
PkrI	GCNGC	3 cut(s)	291, 444, 472
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	4 cut(s)	186, 490, 686, 732
PspGI	CCWGG	4 cut(s)	186, 490, 686, 732
PspN4I	GGNNCC	2 cut(s)	82, 264
PspPI	GGNCC	2 cut(s)	262, 460
PspXI	VCTCGAGB	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	327, 372
RsaNI	GTAC	2 cut(s)	326, 371
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	45, 396
SatI	GCNGC	3 cut(s)	290, 443, 471
Sau3AI	GATC	4 cut(s)	27, 34, 268, 337
Sau96I	GGNCC	2 cut(s)	262, 460
ScrFI	CCNGG	5 cut(s)	188, 492, 688, 706, 734
SduI	GDGCHC	2 cut(s)	381, 713
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	2 cut(s)	262, 460
SlaI	CTCGAG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	599
SsiI	CCGC	2 cut(s)	413, 445
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	5 cut(s)	186, 490, 686, 704, 732
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	298, 522, 682
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	6 cut(s)	33, 63, 93, 381, 542, 560
TasI	AATT	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	133, 562
Tru1I	TTAA	2 cut(s)	45, 396
Tru9I	TTAA	2 cut(s)	45, 396
TscAI	CASTG	3 cut(s)	301, 525, 685
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	3 cut(s)	289, 442, 470
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	3 cut(s)	301, 525, 685
VpaK11BI	GGWCC	2 cut(s)	262, 460
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	380
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.