Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

11677369 .. 11682853

Gene Structure 5485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGATAGAGCAGAAACAAGCCCAGCTGATCGATCACTTCGTGAAGCAAGCCTCGACTCTCCAAGGCTCTTCTCTCGCCAGCCTCATCGTCCAAGTCACCTCTCACAATTCCCTCTTTGCTTTCTCTGAGATTCTCGCCGTCCCCAATGTCCTCCAGCTTCAAGGAACCGAATATGCTATATACATTGATATGCTTCGCCTCTTTGCTCATGGTACATGGAGCGATTATAAAAGTAATGCTAGTCTTCTTCCACCACTAGTCCCAGATCAAATTATCAAGCTGAAGCAACTTACTGTGCTGTCTCTAGCTGAGACGAACAAGGTTCTGTCCTATGATCAACTCCTTGAGCAACTTGATCTTTCAAATGTACGCGAACTTGAAGACTTTCTTATCAATGAATGCATGTATATGGGCATAATCAGAGGGAAGTTGGATCATTTGAAAAGATCTGTTGAGGTTCAATTTGCAGCTGGGAGGGATCTGAAACCTGGCCAGCTTGGGAATATAATAGACACCTTAACGGATTGGTTAGCCACTACCGACAATGTACTCGTCACAATTGAGGAGAAGATCAAATGGGCAGATAAGAAGTGTGAGTTGAATGCAACACACCAAAAGGAGGTCAAGGACAGAGTGGAAGAAGTGAAGAAGTCTCTTGGTCACGACAGGCCGCCCCGTGGATACCGTGTTGAAGATTTTATGCTTGGTGAACATGGTGGGTTAATGGACTATGAAGAAGATCGCACGCGAATGAAGAGAAGAAGGTCGCCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

261

Amino Acids

29.8

Weight (kDa)

5.85

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	1.1e-06	CSN7 helical bundle subdomain
PCI	PF01399	82 - 155	1.3e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccII	CGCG	2 cut(s)	375, 751
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	2 cut(s)	444, 489
AcoI	YGGCCR	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	217, 372, 552
AfiI	CCNNNNNNNGG	2 cut(s)	622, 680
AgsI	TTSAA	7 cut(s)	164, 366, 383, 445, 464, 604, 695
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	6 cut(s)	28, 160, 283, 311, 473, 499
AluI	AGCT	6 cut(s)	28, 160, 283, 311, 473, 499
Alw26I	GTCTC	3 cut(s)	308, 309, 660
AlwI	GGATC	2 cut(s)	444, 489
AoxI	GGCC	2 cut(s)	493, 671
ApeKI	GCWGC	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	91, 722
BalI	TGGCCA	1 cut(s)	495
BbsI	GAAGAC	2 cut(s)	239, 390
BbvI	GCAGC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	677
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	308, 309, 660
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	3 cut(s)	243, 260, 308
BfuI	GTATCC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	2 cut(s)	471, 674
BlsI	GCNGC	2 cut(s)	472, 675
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	492
BpiI	GAAGAC	2 cut(s)	239, 390
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	64, 679, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	622, 680
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	64, 679, 773
BseLI	CCNNNNNNNGG	2 cut(s)	622, 680
BseMII	CTCAG	2 cut(s)	120, 303
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	2 cut(s)	24, 473
Bsh1236I	CGCG	2 cut(s)	375, 751
BshFI	GGCC	2 cut(s)	495, 673
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	128, 248
BslI	CCNNNNNNNGG	2 cut(s)	622, 680
BsmAI	GTCTC	3 cut(s)	308, 309, 660
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	128, 248
BsmI	GAATGC	2 cut(s)	407, 610
BsnI	GGCC	2 cut(s)	495, 673
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	2 cut(s)	495, 673
BspCNI	CTCAG	2 cut(s)	121, 304
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	375, 751
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	444, 489
BspQI	GCTCTTC	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	64, 679, 773
BssT1I	CCWWGG	2 cut(s)	64, 773
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	298, 689
Bst6I	CTCTTC	2 cut(s)	76, 752
BstC8I	GCNNGC	4 cut(s)	51, 82, 497, 749
BstDEI	CTNAG	2 cut(s)	129, 312
BstDSI	CCRYGG	1 cut(s)	679
BstFNI	CGCG	2 cut(s)	375, 751
BstMAI	GTCTC	3 cut(s)	308, 309, 660
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	490
BstUI	CGCG	2 cut(s)	375, 751
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	2 cut(s)	239, 390
BstX2I	RGATCY	2 cut(s)	449, 481
BstYI	RGATCY	2 cut(s)	449, 481
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	677
BsuRI	GGCC	2 cut(s)	495, 673
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	679
Cac8I	GCNNGC	4 cut(s)	51, 82, 497, 749
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	216, 371, 551
CviAII	CATG	4 cut(s)	212, 219, 406, 716
CviQI	GTAC	3 cut(s)	216, 371, 551
DdeI	CTNAG	2 cut(s)	129, 312
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	76, 752
EarI	CTCTTC	2 cut(s)	76, 752
Eco130I	CCWWGG	2 cut(s)	64, 773
Eco57I	CTGAAG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	64, 773
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	2 cut(s)	64, 773
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	4 cut(s)	215, 222, 409, 719
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	4 cut(s)	211, 218, 405, 715
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	471, 674
Fsp4HI	GCNGC	2 cut(s)	471, 674
FspBI	CTAG	3 cut(s)	243, 260, 308
GluI	GCNGC	2 cut(s)	471, 674
GsaI	CCCAGC	2 cut(s)	28, 477
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	495, 673
Hin1II	CATG	4 cut(s)	215, 222, 409, 719
HinfI	GANTC	2 cut(s)	58, 133
HphI	GGTGA	2 cut(s)	91, 722
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	3 cut(s)	130, 425, 486
Hpy188III	TCNNGA	2 cut(s)	43, 665
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	1 cut(s)	759
HpyCH4III	ACNGT	2 cut(s)	298, 689
HpyCH4V	TGCA	3 cut(s)	405, 470, 608
HpyF3I	CTNAG	2 cut(s)	129, 312
Hsp92II	CATG	4 cut(s)	215, 222, 409, 719
Ksp22I	TGATCA	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	9 cut(s)	38, 94, 170, 279, 459, 477, 504, 509, 655
Lsp1109I	GCAGC	1 cut(s)	482
MaeI	CTAG	3 cut(s)	243, 260, 308
MaeIII	GTNAC	3 cut(s)	97, 556, 662
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	449, 481
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	4 cut(s)	109, 273, 464, 561
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	1 cut(s)	495
Mph1103I	ATGCAT	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	3 cut(s)	521, 725, 781
MslI	CAYNNNNRTG	3 cut(s)	191, 410, 752
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	28, 473
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	2 cut(s)	407, 610
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	2 cut(s)	375, 751
NlaIII	CATG	4 cut(s)	215, 222, 409, 719
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	3 cut(s)	97, 556, 662
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	2 cut(s)	407, 610
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	472, 675
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	2 cut(s)	24, 473
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	449, 481
PvuII	CAGCTG	2 cut(s)	28, 473
RsaI	GTAC	3 cut(s)	217, 372, 552
RsaNI	GTAC	3 cut(s)	216, 371, 551
RseI	CAYNNNNRTG	3 cut(s)	191, 410, 752
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	521, 725, 781
SatI	GCNGC	2 cut(s)	471, 674
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	3 cut(s)	191, 410, 752
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	259
Sse9I	AATT	4 cut(s)	109, 273, 464, 561
SsiI	CCGC	1 cut(s)	674
SspMI	CTAG	3 cut(s)	243, 260, 308
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	2 cut(s)	64, 773
TaaI	ACNGT	2 cut(s)	298, 689
TaqI	TCGA	2 cut(s)	33, 56
TasI	AATT	4 cut(s)	109, 273, 464, 561
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	521, 725, 781
Tru9I	TTAA	3 cut(s)	521, 725, 781
TseFI	GTSAC	3 cut(s)	97, 556, 662
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	3 cut(s)	97, 556, 662
TspDTI	ATGAA	3 cut(s)	414, 750, 770
TspGWI	ACGGA	1 cut(s)	539
XceI	RCATGY	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	243, 260, 308
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.