Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

7182802 .. 7196115

Gene Structure 13314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1057800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGGTAGAGCAGAAGCAAGCCCAGGTGATCGAGCACTTCGTGAAGCAAGCCTCTAGTCTCCAGGGGTCCTCTCTCGTCAGCCTCATAGTCCAACTCACCTCTCATTCTTCTCTCTTCGCTTTCTCCGAGATTTTGGCTGTCCCCAATGTGCTCGAGCTTCAAGGAACGGGATATGCTGTATACATTGATCTACTTCGTCTCTTTGCTCATGGAACATGGAGCGACTATAAGAGTAATGCTAGCCTTCTTCCACCACTAGTCCCAGATCAAATCACCAAGCTGAAGCAACTTACTGTGCTTTCTCTAGCTGAGATGAACAGGGTTTTATCATATGATCAACTTCTTGAACAGCTTGATCTTTCAAATGTGCGCGAACTTGAAGACTTTCTTATCAATGATTGCATGTATGCGGGCATAGTCAAAGGGAAGTTGGATCATTTGAGAAGATCTTTCGAGGTTCAATTTGCAGCTGGGAGGGATTTGAGACCTGGACAACTAGGGAATCTAATACAGACTTTAGATGATTGGTTAAACACTACAAACAATGCGCTTCTCACAATTGAAGAGAAGATCAAATGGGCAGATAAAAAGTGTGAGTTGGATGCAGTACACAAAAAGGCAGTCAACGACAGGGTGGAAGAAGTCAAGAAGTCTGTCAATAACAAGGGTGGGCGAGACTTCCAAGCCTTTGATGACATTCTGTTTGGTGAAACAGCTGGACTAATGGACTATGAAGAAGATCGAACCCGAACCAAGAGGAGAAGATCACCGGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

261

Amino Acids

29.48

Weight (kDa)

5.59

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	12 - 43	5.5e-07	CSN7 helical bundle subdomain
PCI	PF01399	82 - 153	1.3e-06	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	612, 777
AgeI	ACCGGT	1 cut(s)	772
AgsI	TTSAA	6 cut(s)	164, 350, 366, 383, 464, 566
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	24, 63, 490
AluBI	AGCT	6 cut(s)	160, 283, 311, 355, 473, 719
AluI	AGCT	6 cut(s)	160, 283, 311, 355, 473, 719
Alw21I	GWGCWC	2 cut(s)	39, 156
Alw26I	GTCTC	4 cut(s)	65, 206, 481, 672
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	470
ArsI	GACNNNNNNTTYG	4 cut(s)	609, 641, 689, 721
AsiGI	ACCGGT	1 cut(s)	772
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	375, 553
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	5 cut(s)	40, 91, 268, 722, 762
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	39, 156
BbvI	GCAGC	1 cut(s)	482
BciT130I	CCWGG	3 cut(s)	26, 65, 492
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	4 cut(s)	65, 206, 481, 672
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	5 cut(s)	57, 243, 260, 308, 500
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	26, 65, 492
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	26, 65, 492
BmsI	GCATC	1 cut(s)	595
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	24, 64
BsaWI	WCCGGW	1 cut(s)	772
Bse118I	RCCGGY	1 cut(s)	772
BseBI	CCWGG	3 cut(s)	26, 65, 492
BseDI	CCNNGG	2 cut(s)	24, 64
BseGI	GGATG	1 cut(s)	610
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	375
BshTI	ACCGGT	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	39, 156
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	773
BslFI	GGGAC	2 cut(s)	128, 248
BsmAI	GTCTC	4 cut(s)	65, 206, 481, 672
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	128, 248
Bso31I	GGTCTC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	39, 156
BspACI	CCGC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	772
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	2 cut(s)	24, 64
BssNAI	GTATAC	1 cut(s)	184
Bst1107I	GTATAC	1 cut(s)	184
Bst2UI	CCWGG	3 cut(s)	26, 65, 492
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	122, 561
BstC8I	GCNNGC	4 cut(s)	21, 51, 244, 415
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	375, 553
BstMAI	GTCTC	4 cut(s)	65, 206, 481, 672
BstNI	CCWGG	3 cut(s)	26, 65, 492
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	24, 63, 490
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BstZ17I	GTATAC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	21, 51, 244, 415
CfoI	GCGC	2 cut(s)	375, 553
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	611, 776
CspAI	ACCGGT	1 cut(s)	772
CviAII	CATG	3 cut(s)	212, 219, 406
CviQI	GTAC	2 cut(s)	611, 776
DdeI	CTNAG	1 cut(s)	312
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	122, 561
EarI	CTCTTC	2 cut(s)	122, 561
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	24, 63, 490
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	215, 222, 409
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	3 cut(s)	211, 218, 405
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	5 cut(s)	57, 243, 260, 308, 500
GlaI	GCGC	2 cut(s)	374, 552
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	1 cut(s)	773
HhaI	GCGC	2 cut(s)	375, 553
Hin1II	CATG	3 cut(s)	215, 222, 409
Hin6I	GCGC	2 cut(s)	373, 551
HinP1I	GCGC	2 cut(s)	373, 551
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	5 cut(s)	40, 91, 268, 722, 762
Hpy166II	GTNNAC	3 cut(s)	184, 613, 628
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	3 cut(s)	43, 347, 649
Hpy8I	GTNNAC	3 cut(s)	184, 613, 628
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	405, 470, 608
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	215, 222, 409
HspAI	GCGC	2 cut(s)	373, 551
Ksp22I	TGATCA	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	5 cut(s)	57, 243, 260, 308, 500
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	2 cut(s)	39, 156
MluCI	AATT	2 cut(s)	464, 561
MmeI	TCCRAC	3 cut(s)	118, 414, 582
MnlI	CCTC	7 cut(s)	64, 82, 95, 112, 451, 471, 753
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	533
MspA1I	CMGCKG	2 cut(s)	473, 719
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	3 cut(s)	26, 65, 492
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	26, 65, 492
MvnI	CGCG	1 cut(s)	375
NdeI	CATATG	1 cut(s)	334
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	215, 222, 409
NlaIV	GGNNCC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 126
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	505
PinAI	ACCGGT	1 cut(s)	772
PkrI	GCNGC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	3 cut(s)	24, 63, 490
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	3 cut(s)	24, 63, 490
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	69
PspPPI	RGGWCCY	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	449
PvuII	CAGCTG	2 cut(s)	473, 719
RsaI	GTAC	2 cut(s)	612, 777
RsaNI	GTAC	2 cut(s)	611, 776
SaqAI	TTAA	1 cut(s)	533
SatI	GCNGC	1 cut(s)	471
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	3 cut(s)	26, 65, 492
SduI	GDGCHC	2 cut(s)	39, 156
SfaNI	GCATC	1 cut(s)	595
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	259
Sse9I	AATT	2 cut(s)	464, 561
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	5 cut(s)	57, 243, 260, 308, 500
StyD4I	CCNGG	3 cut(s)	24, 63, 490
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	4 cut(s)	33, 156, 456, 745
TasI	AATT	2 cut(s)	464, 561
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TseI	GCWGC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	332, 750
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	5 cut(s)	57, 243, 260, 308, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.