Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

12057625 .. 12061056

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1106500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGATTGAGCAAAAGCAAGAGGAGGTCATTGATCACTACGTGAGGCAAGCCTCATCACTCGATGGCACCGCTCTCGGCCCCCTCGTCGTAGAAGTCACCTCCCACCCTGCTCTTTTTGCCTTTTCGGAAATTATCGCTGTCCCTAATGTTCTTCAGCTTGAAGGAACTGAAAATTCTGTGTACCTCGATGTGCTTCGATTGTTTGCACATGGCACATGGAGTGATTACAAGAGTGATGCCAGTCGTCTTCCACATTTGGTCCCTGATCAAGTCTTAAAGCTGAAACAGCTTACTGTTCTTACACTGGCTGAGACAAACAAGATGTTATCAATGTATGAGAGCTCGAGGATTTTCTCATTAATGGGTGCATGTATGCGGTGTGGAGTATCCTGTGAGGATATGGCCCTGATGCCCCCTGATAACGCCCCAACAGTTATCGGATACAGATTTGCAGTATTCATTGACATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

159

Amino Acids

17.56

Weight (kDa)

4.75

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	2 cut(s)	72, 379
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	140
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	4 cut(s)	160, 283, 292, 345
AluI	AGCT	4 cut(s)	160, 283, 292, 345
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	2 cut(s)	79, 405
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	80, 262, 406
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	347
BccI	CCATC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciVI	GTATCC	2 cut(s)	400, 437
BclI	TGATCA	2 cut(s)	34, 268
BcoDI	GTCTC	1 cut(s)	308
BfuI	GTATCC	2 cut(s)	400, 437
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	80, 262, 406
BmiI	GGNNCC	3 cut(s)	70, 82, 264
BmsI	GCATC	2 cut(s)	229, 402
BpiI	GAAGAC	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	243, 312
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	243, 312
BseRI	GAGGAG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	81, 407
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	128, 248
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	128, 248
BsnI	GGCC	2 cut(s)	81, 407
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	34, 268
BspACI	CCGC	2 cut(s)	72, 379
BspANI	GGCC	2 cut(s)	81, 407
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	70, 82, 264
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	243, 312
BssMI	GATC	2 cut(s)	34, 268
Bst4CI	ACNGT	2 cut(s)	298, 436
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	37, 271
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	34, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 289
BstNSI	RCATGY	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	242
BsuI	GTATCC	2 cut(s)	400, 437
BsuRI	GGCC	2 cut(s)	81, 407
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	80, 262, 406
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	212, 219, 372
CviJI	RGCY	8 cut(s)	53, 81, 160, 283, 292, 311, 345, 407
CviKI_1	RGCY	8 cut(s)	53, 81, 160, 283, 292, 311, 345, 407
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	36, 270
DpnII	GATC	2 cut(s)	34, 268
DraIII	CACNNNGTG	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	347
FaeI	CATG	3 cut(s)	215, 222, 375
FaiI	YATR	6 cut(s)	213, 220, 339, 373, 377, 404
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	3 cut(s)	211, 218, 371
FbaI	TGATCA	2 cut(s)	34, 268
FriOI	GRGCYC	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	81, 407
Hin1II	CATG	3 cut(s)	215, 222, 375
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	130, 443
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	298, 436
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	209, 371, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 289
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	215, 222, 375
Ksp22I	TGATCA	2 cut(s)	34, 268
Kzo9I	GATC	2 cut(s)	34, 268
LpnPI	CCDG	7 cut(s)	123, 256, 279, 293, 406, 422, 432
LweI	GCATC	2 cut(s)	229, 402
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	36, 270
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	2 cut(s)	34, 268
MboII	GAAGA	2 cut(s)	146, 242
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	2 cut(s)	132, 175
MnlI	CCTC	9 cut(s)	16, 19, 39, 64, 95, 112, 197, 342, 391
MseI	TTAA	2 cut(s)	278, 362
MwoI	GCNNNNNNNGC	2 cut(s)	119, 289
NdeII	GATC	2 cut(s)	34, 268
NlaIII	CATG	3 cut(s)	215, 222, 375
NlaIV	GGNNCC	3 cut(s)	70, 82, 264
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	70, 82, 264
PspPI	GGNCC	3 cut(s)	80, 262, 406
PspXI	VCTCGAGB	1 cut(s)	346
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	278, 362
Sau3AI	GATC	2 cut(s)	34, 268
Sau96I	GGNCC	3 cut(s)	80, 262, 406
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	8 cut(s)	30, 45, 104, 162, 189, 285, 294, 347
SfaNI	GCATC	2 cut(s)	229, 402
Sfr274I	CTCGAG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	132, 175
SsiI	CCGC	2 cut(s)	72, 379
SstI	GAGCTC	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	298, 436
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	63, 189, 199, 347
TasI	AATT	2 cut(s)	132, 175
Tru1I	TTAA	2 cut(s)	278, 362
Tru9I	TTAA	2 cut(s)	278, 362
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	262
VspI	ATTAAT	1 cut(s)	362
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	375
XhoI	CTCGAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.